Literature DB >> 22065122

(E)-2-{1-[(6-Chloro-pyridin-3-yl)meth-yl]imidazolidin-2-yl-idene}-2-cyano-N-(2-methylphenyl)acetamide.

Jian Wu1.   

Abstract

In the title compound, C(19)H(18)N(5)O, the imidazolidine ring makes dihedral angles of 87.62 (17) and 28.27 (11)° with the pyridine and benzene rings, respectively. An intra-molecular N-H⋯O hydrogen bond is observed between the carbonyl O atom and an imidazolidine H atom. In the crystal, an inter-molecular N-H⋯N hydrogen bond gives rise to a linear chain running along the b axis.

Entities:  

Year:  2011        PMID: 22065122      PMCID: PMC3201308          DOI: 10.1107/S1600536811037524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to neonicotinoids and their biological activity, see: Shao et al. (2008 ▶); Nishimura et al. (1994 ▶); Mori et al. (2002 ▶); Ohno et al. (2009 ▶); Tomizawa et al. (2000 ▶); Wu et al. (2011 ▶).

Experimental

Crystal data

C19H18ClN5O M = 367.83 Monoclinic, a = 16.2019 (18) Å b = 7.6240 (9) Å c = 14.7368 (18) Å β = 97.007 (3)° V = 1806.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.26 × 0.23 × 0.21 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997) ▶ T min = 0.943, T max = 0.953 19209 measured reflections 3512 independent reflections 2618 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.139 S = 1.03 3512 reflections 238 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037524/ng5220sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037524/ng5220Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037524/ng5220Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536811037524/ng5220Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18ClN5OF(000) = 768
Mr = 367.83Dx = 1.352 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 19209 reflections
a = 16.2019 (18) Åθ = 1.3–26.0°
b = 7.6240 (9) ŵ = 0.23 mm1
c = 14.7368 (18) ÅT = 293 K
β = 97.007 (3)°Prism, colourless
V = 1806.7 (4) Å30.26 × 0.23 × 0.21 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer3512 independent reflections
Radiation source: fine-focus sealed tube2618 reflections with I > 2σ(I)
graphiteRint = 0.060
φ and ω scansθmax = 26.0°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −19→19
Tmin = 0.943, Tmax = 0.953k = −9→9
19209 measured reflectionsl = −18→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0717P)2 + 0.3718P] where P = (Fo2 + 2Fc2)/3
3512 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.48863 (12)−0.2075 (2)−0.41527 (13)0.0530 (5)
C20.42330 (13)−0.1992 (3)−0.48356 (13)0.0598 (5)
H20.4244−0.2600−0.53810.072*
C30.35610 (13)−0.0979 (3)−0.46850 (13)0.0552 (5)
H30.3105−0.0890−0.51320.066*
C40.35663 (11)−0.0093 (2)−0.38658 (12)0.0477 (4)
C50.42631 (13)−0.0274 (3)−0.32411 (14)0.0623 (6)
H50.42780.0335−0.26930.075*
C60.28226 (13)0.0973 (3)−0.36788 (15)0.0641 (6)
H6A0.25420.1407−0.42540.077*
H6B0.24370.0219−0.34070.077*
N20.30409 (10)0.2454 (2)−0.30700 (11)0.0570 (4)
C80.32548 (15)0.5482 (3)−0.28080 (15)0.0673 (6)
H8A0.37710.5860−0.24610.081*
H8B0.29890.6479−0.31320.081*
C90.26236 (11)0.2939 (2)−0.23634 (12)0.0497 (5)
C100.22032 (12)0.1820 (2)−0.18154 (13)0.0506 (5)
C110.23108 (16)−0.0018 (3)−0.18395 (18)0.0735 (6)
C120.17737 (11)0.2533 (2)−0.10901 (12)0.0479 (4)
H12B0.1949−0.16080.03930.108 (10)*
H12C0.1391−0.24270.10110.117 (11)*
H12A0.1041−0.2307−0.00430.133 (11)*
C130.10396 (11)0.1528 (3)0.02201 (14)0.0540 (5)
C140.07069 (13)0.3118 (3)0.04596 (15)0.0631 (6)
H140.07180.40870.00780.076*
C150.03602 (16)0.3252 (4)0.12656 (17)0.0790 (7)
H150.01330.43130.14240.095*
C160.03473 (18)0.1828 (4)0.18372 (18)0.0889 (8)
H160.01180.19280.23840.107*
C170.06735 (16)0.0262 (4)0.15965 (18)0.0836 (7)
H170.0658−0.06940.19860.100*
C180.10247 (13)0.0055 (3)0.07951 (16)0.0652 (6)
C190.13699 (18)−0.1683 (3)0.0544 (2)0.0883 (8)
N10.49193 (11)−0.1261 (2)−0.33656 (12)0.0644 (5)
C70.33994 (16)0.4000 (3)−0.34602 (16)0.0731 (7)
H7A0.31240.4240−0.40690.088*
H7B0.39890.3835−0.34930.088*
N30.27094 (11)0.4658 (2)−0.22247 (11)0.0592 (4)
H3A0.24650.5223−0.18280.071*
N40.2387 (2)−0.1517 (3)−0.1790 (2)0.1184 (10)
N50.13992 (11)0.1309 (2)−0.05957 (12)0.0611 (5)
H5A0.13810.0262−0.08140.073*
O10.17555 (9)0.41125 (17)−0.09060 (9)0.0620 (4)
Cl10.57548 (4)−0.33450 (9)−0.43072 (4)0.0805 (2)
U11U22U33U12U13U23
C10.0587 (11)0.0458 (10)0.0560 (11)0.0075 (8)0.0131 (9)−0.0006 (9)
C20.0789 (13)0.0558 (12)0.0450 (11)0.0146 (10)0.0080 (9)−0.0111 (9)
C30.0672 (12)0.0540 (11)0.0427 (10)0.0125 (9)−0.0005 (8)−0.0057 (8)
C40.0561 (10)0.0442 (10)0.0431 (10)0.0042 (8)0.0076 (8)−0.0042 (8)
C50.0650 (12)0.0714 (14)0.0496 (11)0.0127 (10)0.0032 (9)−0.0184 (10)
C60.0623 (12)0.0744 (14)0.0548 (12)0.0141 (10)0.0040 (9)−0.0206 (10)
N20.0692 (10)0.0508 (10)0.0532 (9)0.0108 (8)0.0160 (8)−0.0081 (8)
C80.0861 (15)0.0555 (12)0.0639 (13)0.0111 (11)0.0236 (11)0.0056 (10)
C90.0564 (10)0.0471 (11)0.0452 (10)0.0146 (8)0.0046 (8)−0.0048 (8)
C100.0572 (11)0.0408 (10)0.0540 (11)0.0068 (8)0.0072 (8)−0.0082 (8)
C110.0889 (16)0.0509 (14)0.0875 (16)0.0048 (11)0.0375 (13)−0.0124 (11)
C120.0520 (10)0.0436 (10)0.0473 (10)0.0052 (8)0.0027 (8)−0.0048 (8)
C130.0453 (10)0.0568 (12)0.0600 (12)−0.0044 (8)0.0067 (8)−0.0024 (9)
C140.0614 (12)0.0642 (14)0.0654 (13)0.0096 (10)0.0145 (10)0.0006 (10)
C150.0834 (16)0.0865 (18)0.0714 (15)0.0118 (13)0.0267 (13)−0.0074 (13)
C160.0936 (19)0.108 (2)0.0700 (16)0.0016 (16)0.0287 (14)0.0055 (16)
C170.0858 (17)0.0905 (19)0.0765 (17)−0.0106 (14)0.0182 (14)0.0223 (14)
C180.0568 (11)0.0588 (13)0.0791 (15)−0.0077 (10)0.0051 (11)0.0058 (11)
C190.0933 (19)0.0552 (15)0.117 (2)−0.0042 (13)0.0150 (16)0.0151 (15)
N10.0613 (10)0.0739 (12)0.0561 (10)0.0134 (9)−0.0004 (8)−0.0134 (9)
C70.0949 (17)0.0642 (14)0.0654 (14)0.0189 (12)0.0303 (12)0.0051 (11)
N30.0820 (11)0.0422 (9)0.0569 (10)0.0107 (8)0.0229 (8)−0.0018 (7)
N40.178 (3)0.0454 (13)0.150 (2)0.0096 (14)0.092 (2)−0.0105 (13)
N50.0693 (11)0.0447 (9)0.0724 (12)−0.0027 (8)0.0210 (9)−0.0106 (8)
O10.0873 (10)0.0426 (8)0.0596 (9)0.0034 (7)0.0229 (7)−0.0087 (6)
Cl10.0730 (4)0.0846 (5)0.0850 (5)0.0292 (3)0.0141 (3)−0.0110 (3)
C1—N11.311 (3)C10—C121.450 (3)
C1—C21.370 (3)C11—N41.151 (3)
C1—Cl11.7458 (19)C12—O11.236 (2)
C2—C31.375 (3)C12—N51.370 (3)
C2—H20.9300C13—C141.390 (3)
C3—C41.383 (3)C13—N51.408 (3)
C3—H30.9300C13—C181.408 (3)
C4—C51.374 (3)C14—C151.378 (3)
C4—C61.506 (3)C14—H140.9300
C5—N11.334 (3)C15—C161.376 (4)
C5—H50.9300C15—H150.9300
C6—N21.459 (3)C16—C171.370 (4)
C6—H6A0.9700C16—H160.9300
C6—H6B0.9700C17—C181.381 (4)
N2—C91.360 (2)C17—H170.9300
N2—C71.462 (3)C18—C191.502 (4)
C8—N31.449 (3)C19—H12B0.9917
C8—C71.520 (3)C19—H12C0.8887
C8—H8A0.9700C19—H12A1.0711
C8—H8B0.9700C7—H7A0.9700
C9—N31.331 (2)C7—H7B0.9700
C9—C101.407 (3)N3—H3A0.8600
C10—C111.413 (3)N5—H5A0.8600
N1—C1—C2124.94 (18)N5—C12—C10114.85 (16)
N1—C1—Cl1115.56 (15)C14—C13—N5122.25 (19)
C2—C1—Cl1119.50 (15)C14—C13—C18120.5 (2)
C1—C2—C3117.60 (18)N5—C13—C18117.29 (19)
C1—C2—H2121.2C15—C14—C13119.7 (2)
C3—C2—H2121.2C15—C14—H14120.2
C2—C3—C4119.67 (18)C13—C14—H14120.2
C2—C3—H3120.2C16—C15—C14120.5 (2)
C4—C3—H3120.2C16—C15—H15119.8
C5—C4—C3116.93 (17)C14—C15—H15119.8
C5—C4—C6122.82 (17)C17—C16—C15119.6 (2)
C3—C4—C6120.23 (17)C17—C16—H16120.2
N1—C5—C4124.64 (18)C15—C16—H16120.2
N1—C5—H5117.7C16—C17—C18122.2 (2)
C4—C5—H5117.7C16—C17—H17118.9
N2—C6—C4113.00 (17)C18—C17—H17118.9
N2—C6—H6A109.0C17—C18—C13117.6 (2)
C4—C6—H6A109.0C17—C18—C19121.1 (2)
N2—C6—H6B109.0C13—C18—C19121.4 (2)
C4—C6—H6B109.0C18—C19—H12B113.3
H6A—C6—H6B107.8C18—C19—H12C110.6
C9—N2—C6125.12 (18)H12B—C19—H12C105.3
C9—N2—C7109.92 (16)C18—C19—H12A115.3
C6—N2—C7117.40 (17)H12B—C19—H12A103.6
N3—C8—C7101.83 (18)H12C—C19—H12A108.1
N3—C8—H8A111.4C1—N1—C5116.21 (17)
C7—C8—H8A111.4N2—C7—C8104.54 (17)
N3—C8—H8B111.4N2—C7—H7A110.8
C7—C8—H8B111.4C8—C7—H7A110.8
H8A—C8—H8B109.3N2—C7—H7B110.8
N3—C9—N2109.43 (17)C8—C7—H7B110.8
N3—C9—C10123.91 (16)H7A—C7—H7B108.9
N2—C9—C10126.56 (17)C9—N3—C8113.30 (16)
C9—C10—C11121.14 (18)C9—N3—H3A123.3
C9—C10—C12120.36 (16)C8—N3—H3A123.3
C11—C10—C12117.51 (19)C12—N5—C13129.02 (17)
N4—C11—C10174.7 (3)C12—N5—H5A115.5
O1—C12—N5121.52 (17)C13—N5—H5A115.5
O1—C12—C10123.60 (18)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N4i0.862.493.044 (3)123.
N3—H3A···O10.862.072.659 (2)126.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N4i0.862.493.044 (3)123
N3—H3A⋯O10.862.072.659 (2)126

Symmetry code: (i) .

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