| Literature DB >> 22065122 |
Jian Wu1.
Abstract
In the title compound, C(19)H(18)N(5)O, the imidazolidine ring makes dihedral angles of 87.62 (17) and 28.27 (11)° with the pyridine and benzene rings, respectively. An intra-molecular N-H⋯O hydrogen bond is observed between the carbonyl O atom and an imidazolidine H atom. In the crystal, an inter-molecular N-H⋯N hydrogen bond gives rise to a linear chain running along the b axis.Entities:
Year: 2011 PMID: 22065122 PMCID: PMC3201308 DOI: 10.1107/S1600536811037524
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H18ClN5O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 19209 reflections |
| θ = 1.3–26.0° | |
| µ = 0.23 mm−1 | |
| β = 97.007 (3)° | Prism, colourless |
| 0.26 × 0.23 × 0.21 mm | |
| Bruker APEXII CCD area-detector diffractometer | 3512 independent reflections |
| Radiation source: fine-focus sealed tube | 2618 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.3° |
| Absorption correction: multi-scan ( | |
| 19209 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3512 reflections | (Δ/σ)max = 0.001 |
| 238 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.48863 (12) | −0.2075 (2) | −0.41527 (13) | 0.0530 (5) | |
| C2 | 0.42330 (13) | −0.1992 (3) | −0.48356 (13) | 0.0598 (5) | |
| H2 | 0.4244 | −0.2600 | −0.5381 | 0.072* | |
| C3 | 0.35610 (13) | −0.0979 (3) | −0.46850 (13) | 0.0552 (5) | |
| H3 | 0.3105 | −0.0890 | −0.5132 | 0.066* | |
| C4 | 0.35663 (11) | −0.0093 (2) | −0.38658 (12) | 0.0477 (4) | |
| C5 | 0.42631 (13) | −0.0274 (3) | −0.32411 (14) | 0.0623 (6) | |
| H5 | 0.4278 | 0.0335 | −0.2693 | 0.075* | |
| C6 | 0.28226 (13) | 0.0973 (3) | −0.36788 (15) | 0.0641 (6) | |
| H6A | 0.2542 | 0.1407 | −0.4254 | 0.077* | |
| H6B | 0.2437 | 0.0219 | −0.3407 | 0.077* | |
| N2 | 0.30409 (10) | 0.2454 (2) | −0.30700 (11) | 0.0570 (4) | |
| C8 | 0.32548 (15) | 0.5482 (3) | −0.28080 (15) | 0.0673 (6) | |
| H8A | 0.3771 | 0.5860 | −0.2461 | 0.081* | |
| H8B | 0.2989 | 0.6479 | −0.3132 | 0.081* | |
| C9 | 0.26236 (11) | 0.2939 (2) | −0.23634 (12) | 0.0497 (5) | |
| C10 | 0.22032 (12) | 0.1820 (2) | −0.18154 (13) | 0.0506 (5) | |
| C11 | 0.23108 (16) | −0.0018 (3) | −0.18395 (18) | 0.0735 (6) | |
| C12 | 0.17737 (11) | 0.2533 (2) | −0.10901 (12) | 0.0479 (4) | |
| H12B | 0.1949 | −0.1608 | 0.0393 | 0.108 (10)* | |
| H12C | 0.1391 | −0.2427 | 0.1011 | 0.117 (11)* | |
| H12A | 0.1041 | −0.2307 | −0.0043 | 0.133 (11)* | |
| C13 | 0.10396 (11) | 0.1528 (3) | 0.02201 (14) | 0.0540 (5) | |
| C14 | 0.07069 (13) | 0.3118 (3) | 0.04596 (15) | 0.0631 (6) | |
| H14 | 0.0718 | 0.4087 | 0.0078 | 0.076* | |
| C15 | 0.03602 (16) | 0.3252 (4) | 0.12656 (17) | 0.0790 (7) | |
| H15 | 0.0133 | 0.4313 | 0.1424 | 0.095* | |
| C16 | 0.03473 (18) | 0.1828 (4) | 0.18372 (18) | 0.0889 (8) | |
| H16 | 0.0118 | 0.1928 | 0.2384 | 0.107* | |
| C17 | 0.06735 (16) | 0.0262 (4) | 0.15965 (18) | 0.0836 (7) | |
| H17 | 0.0658 | −0.0694 | 0.1986 | 0.100* | |
| C18 | 0.10247 (13) | 0.0055 (3) | 0.07951 (16) | 0.0652 (6) | |
| C19 | 0.13699 (18) | −0.1683 (3) | 0.0544 (2) | 0.0883 (8) | |
| N1 | 0.49193 (11) | −0.1261 (2) | −0.33656 (12) | 0.0644 (5) | |
| C7 | 0.33994 (16) | 0.4000 (3) | −0.34602 (16) | 0.0731 (7) | |
| H7A | 0.3124 | 0.4240 | −0.4069 | 0.088* | |
| H7B | 0.3989 | 0.3835 | −0.3493 | 0.088* | |
| N3 | 0.27094 (11) | 0.4658 (2) | −0.22247 (11) | 0.0592 (4) | |
| H3A | 0.2465 | 0.5223 | −0.1828 | 0.071* | |
| N4 | 0.2387 (2) | −0.1517 (3) | −0.1790 (2) | 0.1184 (10) | |
| N5 | 0.13992 (11) | 0.1309 (2) | −0.05957 (12) | 0.0611 (5) | |
| H5A | 0.1381 | 0.0262 | −0.0814 | 0.073* | |
| O1 | 0.17555 (9) | 0.41125 (17) | −0.09060 (9) | 0.0620 (4) | |
| Cl1 | 0.57548 (4) | −0.33450 (9) | −0.43072 (4) | 0.0805 (2) |
| C1 | 0.0587 (11) | 0.0458 (10) | 0.0560 (11) | 0.0075 (8) | 0.0131 (9) | −0.0006 (9) |
| C2 | 0.0789 (13) | 0.0558 (12) | 0.0450 (11) | 0.0146 (10) | 0.0080 (9) | −0.0111 (9) |
| C3 | 0.0672 (12) | 0.0540 (11) | 0.0427 (10) | 0.0125 (9) | −0.0005 (8) | −0.0057 (8) |
| C4 | 0.0561 (10) | 0.0442 (10) | 0.0431 (10) | 0.0042 (8) | 0.0076 (8) | −0.0042 (8) |
| C5 | 0.0650 (12) | 0.0714 (14) | 0.0496 (11) | 0.0127 (10) | 0.0032 (9) | −0.0184 (10) |
| C6 | 0.0623 (12) | 0.0744 (14) | 0.0548 (12) | 0.0141 (10) | 0.0040 (9) | −0.0206 (10) |
| N2 | 0.0692 (10) | 0.0508 (10) | 0.0532 (9) | 0.0108 (8) | 0.0160 (8) | −0.0081 (8) |
| C8 | 0.0861 (15) | 0.0555 (12) | 0.0639 (13) | 0.0111 (11) | 0.0236 (11) | 0.0056 (10) |
| C9 | 0.0564 (10) | 0.0471 (11) | 0.0452 (10) | 0.0146 (8) | 0.0046 (8) | −0.0048 (8) |
| C10 | 0.0572 (11) | 0.0408 (10) | 0.0540 (11) | 0.0068 (8) | 0.0072 (8) | −0.0082 (8) |
| C11 | 0.0889 (16) | 0.0509 (14) | 0.0875 (16) | 0.0048 (11) | 0.0375 (13) | −0.0124 (11) |
| C12 | 0.0520 (10) | 0.0436 (10) | 0.0473 (10) | 0.0052 (8) | 0.0027 (8) | −0.0048 (8) |
| C13 | 0.0453 (10) | 0.0568 (12) | 0.0600 (12) | −0.0044 (8) | 0.0067 (8) | −0.0024 (9) |
| C14 | 0.0614 (12) | 0.0642 (14) | 0.0654 (13) | 0.0096 (10) | 0.0145 (10) | 0.0006 (10) |
| C15 | 0.0834 (16) | 0.0865 (18) | 0.0714 (15) | 0.0118 (13) | 0.0267 (13) | −0.0074 (13) |
| C16 | 0.0936 (19) | 0.108 (2) | 0.0700 (16) | 0.0016 (16) | 0.0287 (14) | 0.0055 (16) |
| C17 | 0.0858 (17) | 0.0905 (19) | 0.0765 (17) | −0.0106 (14) | 0.0182 (14) | 0.0223 (14) |
| C18 | 0.0568 (11) | 0.0588 (13) | 0.0791 (15) | −0.0077 (10) | 0.0051 (11) | 0.0058 (11) |
| C19 | 0.0933 (19) | 0.0552 (15) | 0.117 (2) | −0.0042 (13) | 0.0150 (16) | 0.0151 (15) |
| N1 | 0.0613 (10) | 0.0739 (12) | 0.0561 (10) | 0.0134 (9) | −0.0004 (8) | −0.0134 (9) |
| C7 | 0.0949 (17) | 0.0642 (14) | 0.0654 (14) | 0.0189 (12) | 0.0303 (12) | 0.0051 (11) |
| N3 | 0.0820 (11) | 0.0422 (9) | 0.0569 (10) | 0.0107 (8) | 0.0229 (8) | −0.0018 (7) |
| N4 | 0.178 (3) | 0.0454 (13) | 0.150 (2) | 0.0096 (14) | 0.092 (2) | −0.0105 (13) |
| N5 | 0.0693 (11) | 0.0447 (9) | 0.0724 (12) | −0.0027 (8) | 0.0210 (9) | −0.0106 (8) |
| O1 | 0.0873 (10) | 0.0426 (8) | 0.0596 (9) | 0.0034 (7) | 0.0229 (7) | −0.0087 (6) |
| Cl1 | 0.0730 (4) | 0.0846 (5) | 0.0850 (5) | 0.0292 (3) | 0.0141 (3) | −0.0110 (3) |
| C1—N1 | 1.311 (3) | C10—C12 | 1.450 (3) |
| C1—C2 | 1.370 (3) | C11—N4 | 1.151 (3) |
| C1—Cl1 | 1.7458 (19) | C12—O1 | 1.236 (2) |
| C2—C3 | 1.375 (3) | C12—N5 | 1.370 (3) |
| C2—H2 | 0.9300 | C13—C14 | 1.390 (3) |
| C3—C4 | 1.383 (3) | C13—N5 | 1.408 (3) |
| C3—H3 | 0.9300 | C13—C18 | 1.408 (3) |
| C4—C5 | 1.374 (3) | C14—C15 | 1.378 (3) |
| C4—C6 | 1.506 (3) | C14—H14 | 0.9300 |
| C5—N1 | 1.334 (3) | C15—C16 | 1.376 (4) |
| C5—H5 | 0.9300 | C15—H15 | 0.9300 |
| C6—N2 | 1.459 (3) | C16—C17 | 1.370 (4) |
| C6—H6A | 0.9700 | C16—H16 | 0.9300 |
| C6—H6B | 0.9700 | C17—C18 | 1.381 (4) |
| N2—C9 | 1.360 (2) | C17—H17 | 0.9300 |
| N2—C7 | 1.462 (3) | C18—C19 | 1.502 (4) |
| C8—N3 | 1.449 (3) | C19—H12B | 0.9917 |
| C8—C7 | 1.520 (3) | C19—H12C | 0.8887 |
| C8—H8A | 0.9700 | C19—H12A | 1.0711 |
| C8—H8B | 0.9700 | C7—H7A | 0.9700 |
| C9—N3 | 1.331 (2) | C7—H7B | 0.9700 |
| C9—C10 | 1.407 (3) | N3—H3A | 0.8600 |
| C10—C11 | 1.413 (3) | N5—H5A | 0.8600 |
| N1—C1—C2 | 124.94 (18) | N5—C12—C10 | 114.85 (16) |
| N1—C1—Cl1 | 115.56 (15) | C14—C13—N5 | 122.25 (19) |
| C2—C1—Cl1 | 119.50 (15) | C14—C13—C18 | 120.5 (2) |
| C1—C2—C3 | 117.60 (18) | N5—C13—C18 | 117.29 (19) |
| C1—C2—H2 | 121.2 | C15—C14—C13 | 119.7 (2) |
| C3—C2—H2 | 121.2 | C15—C14—H14 | 120.2 |
| C2—C3—C4 | 119.67 (18) | C13—C14—H14 | 120.2 |
| C2—C3—H3 | 120.2 | C16—C15—C14 | 120.5 (2) |
| C4—C3—H3 | 120.2 | C16—C15—H15 | 119.8 |
| C5—C4—C3 | 116.93 (17) | C14—C15—H15 | 119.8 |
| C5—C4—C6 | 122.82 (17) | C17—C16—C15 | 119.6 (2) |
| C3—C4—C6 | 120.23 (17) | C17—C16—H16 | 120.2 |
| N1—C5—C4 | 124.64 (18) | C15—C16—H16 | 120.2 |
| N1—C5—H5 | 117.7 | C16—C17—C18 | 122.2 (2) |
| C4—C5—H5 | 117.7 | C16—C17—H17 | 118.9 |
| N2—C6—C4 | 113.00 (17) | C18—C17—H17 | 118.9 |
| N2—C6—H6A | 109.0 | C17—C18—C13 | 117.6 (2) |
| C4—C6—H6A | 109.0 | C17—C18—C19 | 121.1 (2) |
| N2—C6—H6B | 109.0 | C13—C18—C19 | 121.4 (2) |
| C4—C6—H6B | 109.0 | C18—C19—H12B | 113.3 |
| H6A—C6—H6B | 107.8 | C18—C19—H12C | 110.6 |
| C9—N2—C6 | 125.12 (18) | H12B—C19—H12C | 105.3 |
| C9—N2—C7 | 109.92 (16) | C18—C19—H12A | 115.3 |
| C6—N2—C7 | 117.40 (17) | H12B—C19—H12A | 103.6 |
| N3—C8—C7 | 101.83 (18) | H12C—C19—H12A | 108.1 |
| N3—C8—H8A | 111.4 | C1—N1—C5 | 116.21 (17) |
| C7—C8—H8A | 111.4 | N2—C7—C8 | 104.54 (17) |
| N3—C8—H8B | 111.4 | N2—C7—H7A | 110.8 |
| C7—C8—H8B | 111.4 | C8—C7—H7A | 110.8 |
| H8A—C8—H8B | 109.3 | N2—C7—H7B | 110.8 |
| N3—C9—N2 | 109.43 (17) | C8—C7—H7B | 110.8 |
| N3—C9—C10 | 123.91 (16) | H7A—C7—H7B | 108.9 |
| N2—C9—C10 | 126.56 (17) | C9—N3—C8 | 113.30 (16) |
| C9—C10—C11 | 121.14 (18) | C9—N3—H3A | 123.3 |
| C9—C10—C12 | 120.36 (16) | C8—N3—H3A | 123.3 |
| C11—C10—C12 | 117.51 (19) | C12—N5—C13 | 129.02 (17) |
| N4—C11—C10 | 174.7 (3) | C12—N5—H5A | 115.5 |
| O1—C12—N5 | 121.52 (17) | C13—N5—H5A | 115.5 |
| O1—C12—C10 | 123.60 (18) |
| H··· | ||||
| N3—H3A···N4i | 0.86 | 2.49 | 3.044 (3) | 123. |
| N3—H3A···O1 | 0.86 | 2.07 | 2.659 (2) | 126. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 2.49 | 3.044 (3) | 123 |
| N3—H3 | 0.86 | 2.07 | 2.659 (2) | 126 |
Symmetry code: (i) .