| Literature DB >> 22065021 |
Hoong-Kun Fun, Suhana Arshad, Shobhitha Shetty, Balakrishna Kalluraya.
Abstract
In the title mol-ecule, C(12)H(13)N(5)O(2)S, a bifurcated intra-molecular N-H⋯O(O) hydrogen bond forms two S(6) ring motifs. The benzene ring forms a dihedral angle of 14.36 (11)° with the pyrazole ring. In the crystal, pairs of N-H⋯S hydrogen bonds form centrosymmetric dimers, generating R(2) (2)(8) ring motifs, which stack along the b axis.Entities:
Year: 2011 PMID: 22065021 PMCID: PMC3201502 DOI: 10.1107/S1600536811037883
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13N5O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yc | Cell parameters from 5668 reflections |
| θ = 2.2–29.2° | |
| µ = 0.24 mm−1 | |
| β = 108.369 (2)° | Plate, red |
| 0.61 × 0.28 × 0.08 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 4567 independent reflections |
| Radiation source: fine-focus sealed tube | 3273 reflections with |
| graphite | |
| φ and ω scans | θmax = 31.4°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 26169 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4567 reflections | (Δ/σ)max < 0.001 |
| 195 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.11741 (4) | 0.15498 (9) | 0.09216 (3) | 0.05009 (17) | |
| O1 | 0.17608 (12) | 1.2296 (3) | −0.21073 (8) | 0.0635 (4) | |
| O2 | 0.15180 (10) | 0.6859 (3) | −0.08927 (7) | 0.0512 (3) | |
| N1 | 0.28202 (12) | 1.0877 (3) | −0.08210 (8) | 0.0464 (4) | |
| N2 | 0.32172 (11) | 1.0371 (3) | −0.01384 (8) | 0.0435 (3) | |
| N3 | 0.26013 (11) | 0.5730 (3) | 0.09587 (7) | 0.0431 (3) | |
| N4 | 0.19132 (10) | 0.5181 (3) | 0.02795 (7) | 0.0402 (3) | |
| N5 | 0.06446 (14) | 0.2838 (4) | −0.04505 (9) | 0.0567 (5) | |
| C1 | 0.40913 (17) | 1.3986 (5) | −0.08198 (11) | 0.0604 (6) | |
| H1A | 0.4474 | 1.3460 | −0.0364 | 0.072* | |
| C2 | 0.4416 (2) | 1.5936 (5) | −0.11722 (13) | 0.0735 (7) | |
| H2A | 0.5016 | 1.6737 | −0.0951 | 0.088* | |
| C3 | 0.3850 (2) | 1.6686 (5) | −0.18496 (12) | 0.0669 (6) | |
| H3A | 0.4073 | 1.7994 | −0.2083 | 0.080* | |
| C4 | 0.29584 (18) | 1.5529 (4) | −0.21881 (11) | 0.0565 (5) | |
| H4A | 0.2584 | 1.6049 | −0.2647 | 0.068* | |
| C5 | 0.26225 (15) | 1.3592 (4) | −0.18418 (9) | 0.0469 (4) | |
| C6 | 0.31955 (14) | 1.2835 (4) | −0.11518 (9) | 0.0457 (4) | |
| C7 | 0.28270 (13) | 0.8477 (3) | 0.01271 (9) | 0.0405 (4) | |
| C8 | 0.31221 (13) | 0.7655 (4) | 0.08639 (9) | 0.0424 (4) | |
| C9 | 0.20102 (13) | 0.6833 (3) | −0.02533 (9) | 0.0399 (3) | |
| C10 | 0.38820 (17) | 0.8850 (4) | 0.14794 (11) | 0.0603 (6) | |
| H10A | 0.3937 | 0.7893 | 0.1909 | 0.090* | |
| H10B | 0.3697 | 1.0591 | 0.1538 | 0.090* | |
| H10C | 0.4503 | 0.8840 | 0.1389 | 0.090* | |
| C11 | 0.12283 (13) | 0.3225 (3) | 0.02151 (9) | 0.0398 (3) | |
| C12 | 0.1117 (2) | 1.3083 (6) | −0.27861 (13) | 0.0755 (7) | |
| H12A | 0.0572 | 1.1912 | −0.2939 | 0.113* | |
| H12B | 0.1465 | 1.3088 | −0.3132 | 0.113* | |
| H12C | 0.0877 | 1.4782 | −0.2747 | 0.113* | |
| H1N1 | 0.231 (2) | 1.010 (5) | −0.1081 (15) | 0.081 (9)* | |
| H1N5 | 0.0188 (18) | 0.171 (5) | −0.0500 (14) | 0.060 (7)* | |
| H2N5 | 0.071 (2) | 0.387 (6) | −0.0797 (15) | 0.074 (8)* |
| S1 | 0.0585 (3) | 0.0470 (3) | 0.0424 (3) | −0.01645 (19) | 0.01250 (19) | 0.00532 (18) |
| O1 | 0.0680 (9) | 0.0748 (10) | 0.0413 (7) | −0.0202 (8) | 0.0081 (6) | 0.0067 (7) |
| O2 | 0.0618 (8) | 0.0567 (8) | 0.0309 (6) | −0.0155 (6) | 0.0087 (5) | 0.0023 (5) |
| N1 | 0.0569 (9) | 0.0484 (8) | 0.0337 (7) | −0.0151 (7) | 0.0141 (6) | 0.0030 (6) |
| N2 | 0.0532 (8) | 0.0441 (8) | 0.0353 (7) | −0.0102 (6) | 0.0167 (6) | 0.0015 (6) |
| N3 | 0.0509 (8) | 0.0433 (8) | 0.0315 (6) | −0.0117 (6) | 0.0077 (5) | 0.0021 (5) |
| N4 | 0.0490 (7) | 0.0384 (7) | 0.0309 (6) | −0.0117 (6) | 0.0095 (5) | 0.0003 (5) |
| N5 | 0.0659 (10) | 0.0568 (10) | 0.0396 (8) | −0.0278 (9) | 0.0055 (7) | 0.0027 (7) |
| C1 | 0.0693 (12) | 0.0694 (13) | 0.0394 (9) | −0.0247 (11) | 0.0130 (8) | 0.0099 (9) |
| C2 | 0.0822 (15) | 0.0808 (16) | 0.0541 (13) | −0.0374 (13) | 0.0167 (11) | 0.0121 (11) |
| C3 | 0.0923 (16) | 0.0626 (13) | 0.0486 (11) | −0.0257 (12) | 0.0263 (11) | 0.0096 (9) |
| C4 | 0.0801 (13) | 0.0552 (12) | 0.0364 (9) | −0.0072 (10) | 0.0214 (9) | 0.0065 (8) |
| C5 | 0.0611 (10) | 0.0479 (10) | 0.0334 (8) | −0.0078 (8) | 0.0173 (7) | −0.0015 (7) |
| C6 | 0.0605 (10) | 0.0449 (9) | 0.0351 (8) | −0.0100 (8) | 0.0202 (7) | 0.0023 (7) |
| C7 | 0.0485 (8) | 0.0396 (8) | 0.0345 (8) | −0.0097 (7) | 0.0148 (6) | 0.0002 (6) |
| C8 | 0.0498 (9) | 0.0432 (9) | 0.0330 (7) | −0.0115 (7) | 0.0112 (6) | 0.0000 (6) |
| C9 | 0.0490 (8) | 0.0382 (8) | 0.0330 (7) | −0.0060 (6) | 0.0135 (6) | 0.0011 (6) |
| C10 | 0.0682 (12) | 0.0665 (13) | 0.0387 (9) | −0.0277 (10) | 0.0060 (8) | 0.0003 (9) |
| C11 | 0.0457 (8) | 0.0332 (8) | 0.0394 (8) | −0.0054 (6) | 0.0116 (6) | −0.0010 (6) |
| C12 | 0.0713 (14) | 0.106 (2) | 0.0429 (11) | −0.0109 (14) | 0.0086 (10) | 0.0023 (12) |
| S1—C11 | 1.6578 (17) | C1—H1A | 0.9300 |
| O1—C5 | 1.357 (2) | C2—C3 | 1.375 (3) |
| O1—C12 | 1.419 (3) | C2—H2A | 0.9300 |
| O2—C9 | 1.229 (2) | C3—C4 | 1.378 (3) |
| N1—N2 | 1.305 (2) | C3—H3A | 0.9300 |
| N1—C6 | 1.402 (2) | C4—C5 | 1.383 (3) |
| N1—H1N1 | 0.85 (3) | C4—H4A | 0.9300 |
| N2—C7 | 1.317 (2) | C5—C6 | 1.399 (3) |
| N3—C8 | 1.296 (2) | C7—C8 | 1.435 (2) |
| N3—N4 | 1.4131 (18) | C7—C9 | 1.451 (2) |
| N4—C11 | 1.391 (2) | C8—C10 | 1.482 (2) |
| N4—C9 | 1.392 (2) | C10—H10A | 0.9600 |
| N5—C11 | 1.324 (2) | C10—H10B | 0.9600 |
| N5—H1N5 | 0.86 (3) | C10—H10C | 0.9600 |
| N5—H2N5 | 0.89 (3) | C12—H12A | 0.9600 |
| C1—C6 | 1.379 (3) | C12—H12B | 0.9600 |
| C1—C2 | 1.387 (3) | C12—H12C | 0.9600 |
| C5—O1—C12 | 117.38 (18) | C1—C6—C5 | 120.59 (17) |
| N2—N1—C6 | 120.92 (16) | C1—C6—N1 | 122.18 (17) |
| N2—N1—H1N1 | 122.0 (19) | C5—C6—N1 | 117.23 (16) |
| C6—N1—H1N1 | 117.0 (19) | N2—C7—C8 | 126.34 (16) |
| N1—N2—C7 | 116.97 (15) | N2—C7—C9 | 127.67 (16) |
| C8—N3—N4 | 106.45 (13) | C8—C7—C9 | 105.98 (14) |
| C11—N4—C9 | 128.13 (14) | N3—C8—C7 | 111.94 (15) |
| C11—N4—N3 | 119.72 (13) | N3—C8—C10 | 121.01 (16) |
| C9—N4—N3 | 112.12 (13) | C7—C8—C10 | 126.96 (16) |
| C11—N5—H1N5 | 115.8 (17) | O2—C9—N4 | 127.62 (15) |
| C11—N5—H2N5 | 118.4 (18) | O2—C9—C7 | 128.89 (15) |
| H1N5—N5—H2N5 | 125 (2) | N4—C9—C7 | 103.49 (14) |
| C6—C1—C2 | 119.4 (2) | C8—C10—H10A | 109.5 |
| C6—C1—H1A | 120.3 | C8—C10—H10B | 109.5 |
| C2—C1—H1A | 120.3 | H10A—C10—H10B | 109.5 |
| C3—C2—C1 | 120.0 (2) | C8—C10—H10C | 109.5 |
| C3—C2—H2A | 120.0 | H10A—C10—H10C | 109.5 |
| C1—C2—H2A | 120.0 | H10B—C10—H10C | 109.5 |
| C2—C3—C4 | 121.02 (19) | N5—C11—N4 | 114.13 (15) |
| C2—C3—H3A | 119.5 | N5—C11—S1 | 124.15 (14) |
| C4—C3—H3A | 119.5 | N4—C11—S1 | 121.72 (13) |
| C3—C4—C5 | 119.66 (19) | O1—C12—H12A | 109.5 |
| C3—C4—H4A | 120.2 | O1—C12—H12B | 109.5 |
| C5—C4—H4A | 120.2 | H12A—C12—H12B | 109.5 |
| O1—C5—C4 | 126.05 (18) | O1—C12—H12C | 109.5 |
| O1—C5—C6 | 114.59 (16) | H12A—C12—H12C | 109.5 |
| C4—C5—C6 | 119.36 (18) | H12B—C12—H12C | 109.5 |
| C6—N1—N2—C7 | −179.10 (17) | N1—N2—C7—C9 | 1.2 (3) |
| C8—N3—N4—C11 | −178.33 (16) | N4—N3—C8—C7 | −0.7 (2) |
| C8—N3—N4—C9 | −0.3 (2) | N4—N3—C8—C10 | 176.20 (18) |
| C6—C1—C2—C3 | −0.7 (4) | N2—C7—C8—N3 | −179.65 (18) |
| C1—C2—C3—C4 | 0.1 (4) | C9—C7—C8—N3 | 1.3 (2) |
| C2—C3—C4—C5 | 0.3 (4) | N2—C7—C8—C10 | 3.7 (3) |
| C12—O1—C5—C4 | −3.6 (3) | C9—C7—C8—C10 | −175.4 (2) |
| C12—O1—C5—C6 | 176.1 (2) | C11—N4—C9—O2 | −1.5 (3) |
| C3—C4—C5—O1 | 179.7 (2) | N3—N4—C9—O2 | −179.33 (18) |
| C3—C4—C5—C6 | 0.0 (3) | C11—N4—C9—C7 | 178.88 (16) |
| C2—C1—C6—C5 | 0.9 (4) | N3—N4—C9—C7 | 1.00 (19) |
| C2—C1—C6—N1 | −179.2 (2) | N2—C7—C9—O2 | 0.0 (3) |
| O1—C5—C6—C1 | 179.7 (2) | C8—C7—C9—O2 | 179.03 (19) |
| C4—C5—C6—C1 | −0.6 (3) | N2—C7—C9—N4 | 179.64 (18) |
| O1—C5—C6—N1 | −0.2 (3) | C8—C7—C9—N4 | −1.31 (19) |
| C4—C5—C6—N1 | 179.53 (19) | C9—N4—C11—N5 | 4.3 (3) |
| N2—N1—C6—C1 | 12.2 (3) | N3—N4—C11—N5 | −177.95 (17) |
| N2—N1—C6—C5 | −167.88 (17) | C9—N4—C11—S1 | −176.08 (14) |
| N1—N2—C7—C8 | −177.67 (17) | N3—N4—C11—S1 | 1.7 (2) |
| H··· | ||||
| N1—H1N1···O2 | 0.85 (3) | 2.13 (3) | 2.775 (2) | 133 (2) |
| N5—H2N5···O2 | 0.89 (3) | 1.98 (3) | 2.715 (3) | 138 (3) |
| N5—H1N5···S1i | 0.86 (3) | 2.52 (3) | 3.366 (2) | 168 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.85 (3) | 2.13 (3) | 2.775 (2) | 133 (2) |
| N5—H2 | 0.89 (3) | 1.98 (3) | 2.715 (3) | 138 (3) |
| N5—H1 | 0.86 (3) | 2.52 (3) | 3.366 (2) | 168 (2) |
Symmetry code: (i) .