Literature DB >> 22065021

4-[2-(2-Meth-oxy-phen-yl)hydrazinyl-idene]-3-methyl-5-oxo-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Hoong-Kun Fun, Suhana Arshad, Shobhitha Shetty, Balakrishna Kalluraya.   

Abstract

In the title mol-ecule, C(12)H(13)N(5)O(2)S, a bifurcated intra-molecular N-H⋯O(O) hydrogen bond forms two S(6) ring motifs. The benzene ring forms a dihedral angle of 14.36 (11)° with the pyrazole ring. In the crystal, pairs of N-H⋯S hydrogen bonds form centrosymmetric dimers, generating R(2) (2)(8) ring motifs, which stack along the b axis.

Entities:  

Year:  2011        PMID: 22065021      PMCID: PMC3201502          DOI: 10.1107/S1600536811037883

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pyrazole derivatives, see: Rai et al. (2008 ▶); Isloor et al. (2009 ▶); Girisha et al. (2010 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H13N5O2S M = 291.33 Monoclinic, a = 14.3207 (13) Å b = 5.2003 (5) Å c = 19.5919 (18) Å β = 108.369 (2)° V = 1384.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.61 × 0.28 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.866, T max = 0.980 26169 measured reflections 4567 independent reflections 3273 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.187 S = 1.05 4567 reflections 195 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037883/lh5336sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037883/lh5336Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811037883/lh5336Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13N5O2SF(000) = 608
Mr = 291.33Dx = 1.397 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ycCell parameters from 5668 reflections
a = 14.3207 (13) Åθ = 2.2–29.2°
b = 5.2003 (5) ŵ = 0.24 mm1
c = 19.5919 (18) ÅT = 296 K
β = 108.369 (2)°Plate, red
V = 1384.7 (2) Å30.61 × 0.28 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer4567 independent reflections
Radiation source: fine-focus sealed tube3273 reflections with I > 2σ(I)
graphiteRint = 0.061
φ and ω scansθmax = 31.4°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→20
Tmin = 0.866, Tmax = 0.980k = −7→7
26169 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.187H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.1052P)2 + 0.245P] where P = (Fo2 + 2Fc2)/3
4567 reflections(Δ/σ)max < 0.001
195 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.11741 (4)0.15498 (9)0.09216 (3)0.05009 (17)
O10.17608 (12)1.2296 (3)−0.21073 (8)0.0635 (4)
O20.15180 (10)0.6859 (3)−0.08927 (7)0.0512 (3)
N10.28202 (12)1.0877 (3)−0.08210 (8)0.0464 (4)
N20.32172 (11)1.0371 (3)−0.01384 (8)0.0435 (3)
N30.26013 (11)0.5730 (3)0.09587 (7)0.0431 (3)
N40.19132 (10)0.5181 (3)0.02795 (7)0.0402 (3)
N50.06446 (14)0.2838 (4)−0.04505 (9)0.0567 (5)
C10.40913 (17)1.3986 (5)−0.08198 (11)0.0604 (6)
H1A0.44741.3460−0.03640.072*
C20.4416 (2)1.5936 (5)−0.11722 (13)0.0735 (7)
H2A0.50161.6737−0.09510.088*
C30.3850 (2)1.6686 (5)−0.18496 (12)0.0669 (6)
H3A0.40731.7994−0.20830.080*
C40.29584 (18)1.5529 (4)−0.21881 (11)0.0565 (5)
H4A0.25841.6049−0.26470.068*
C50.26225 (15)1.3592 (4)−0.18418 (9)0.0469 (4)
C60.31955 (14)1.2835 (4)−0.11518 (9)0.0457 (4)
C70.28270 (13)0.8477 (3)0.01271 (9)0.0405 (4)
C80.31221 (13)0.7655 (4)0.08639 (9)0.0424 (4)
C90.20102 (13)0.6833 (3)−0.02533 (9)0.0399 (3)
C100.38820 (17)0.8850 (4)0.14794 (11)0.0603 (6)
H10A0.39370.78930.19090.090*
H10B0.36971.05910.15380.090*
H10C0.45030.88400.13890.090*
C110.12283 (13)0.3225 (3)0.02151 (9)0.0398 (3)
C120.1117 (2)1.3083 (6)−0.27861 (13)0.0755 (7)
H12A0.05721.1912−0.29390.113*
H12B0.14651.3088−0.31320.113*
H12C0.08771.4782−0.27470.113*
H1N10.231 (2)1.010 (5)−0.1081 (15)0.081 (9)*
H1N50.0188 (18)0.171 (5)−0.0500 (14)0.060 (7)*
H2N50.071 (2)0.387 (6)−0.0797 (15)0.074 (8)*
U11U22U33U12U13U23
S10.0585 (3)0.0470 (3)0.0424 (3)−0.01645 (19)0.01250 (19)0.00532 (18)
O10.0680 (9)0.0748 (10)0.0413 (7)−0.0202 (8)0.0081 (6)0.0067 (7)
O20.0618 (8)0.0567 (8)0.0309 (6)−0.0155 (6)0.0087 (5)0.0023 (5)
N10.0569 (9)0.0484 (8)0.0337 (7)−0.0151 (7)0.0141 (6)0.0030 (6)
N20.0532 (8)0.0441 (8)0.0353 (7)−0.0102 (6)0.0167 (6)0.0015 (6)
N30.0509 (8)0.0433 (8)0.0315 (6)−0.0117 (6)0.0077 (5)0.0021 (5)
N40.0490 (7)0.0384 (7)0.0309 (6)−0.0117 (6)0.0095 (5)0.0003 (5)
N50.0659 (10)0.0568 (10)0.0396 (8)−0.0278 (9)0.0055 (7)0.0027 (7)
C10.0693 (12)0.0694 (13)0.0394 (9)−0.0247 (11)0.0130 (8)0.0099 (9)
C20.0822 (15)0.0808 (16)0.0541 (13)−0.0374 (13)0.0167 (11)0.0121 (11)
C30.0923 (16)0.0626 (13)0.0486 (11)−0.0257 (12)0.0263 (11)0.0096 (9)
C40.0801 (13)0.0552 (12)0.0364 (9)−0.0072 (10)0.0214 (9)0.0065 (8)
C50.0611 (10)0.0479 (10)0.0334 (8)−0.0078 (8)0.0173 (7)−0.0015 (7)
C60.0605 (10)0.0449 (9)0.0351 (8)−0.0100 (8)0.0202 (7)0.0023 (7)
C70.0485 (8)0.0396 (8)0.0345 (8)−0.0097 (7)0.0148 (6)0.0002 (6)
C80.0498 (9)0.0432 (9)0.0330 (7)−0.0115 (7)0.0112 (6)0.0000 (6)
C90.0490 (8)0.0382 (8)0.0330 (7)−0.0060 (6)0.0135 (6)0.0011 (6)
C100.0682 (12)0.0665 (13)0.0387 (9)−0.0277 (10)0.0060 (8)0.0003 (9)
C110.0457 (8)0.0332 (8)0.0394 (8)−0.0054 (6)0.0116 (6)−0.0010 (6)
C120.0713 (14)0.106 (2)0.0429 (11)−0.0109 (14)0.0086 (10)0.0023 (12)
S1—C111.6578 (17)C1—H1A0.9300
O1—C51.357 (2)C2—C31.375 (3)
O1—C121.419 (3)C2—H2A0.9300
O2—C91.229 (2)C3—C41.378 (3)
N1—N21.305 (2)C3—H3A0.9300
N1—C61.402 (2)C4—C51.383 (3)
N1—H1N10.85 (3)C4—H4A0.9300
N2—C71.317 (2)C5—C61.399 (3)
N3—C81.296 (2)C7—C81.435 (2)
N3—N41.4131 (18)C7—C91.451 (2)
N4—C111.391 (2)C8—C101.482 (2)
N4—C91.392 (2)C10—H10A0.9600
N5—C111.324 (2)C10—H10B0.9600
N5—H1N50.86 (3)C10—H10C0.9600
N5—H2N50.89 (3)C12—H12A0.9600
C1—C61.379 (3)C12—H12B0.9600
C1—C21.387 (3)C12—H12C0.9600
C5—O1—C12117.38 (18)C1—C6—C5120.59 (17)
N2—N1—C6120.92 (16)C1—C6—N1122.18 (17)
N2—N1—H1N1122.0 (19)C5—C6—N1117.23 (16)
C6—N1—H1N1117.0 (19)N2—C7—C8126.34 (16)
N1—N2—C7116.97 (15)N2—C7—C9127.67 (16)
C8—N3—N4106.45 (13)C8—C7—C9105.98 (14)
C11—N4—C9128.13 (14)N3—C8—C7111.94 (15)
C11—N4—N3119.72 (13)N3—C8—C10121.01 (16)
C9—N4—N3112.12 (13)C7—C8—C10126.96 (16)
C11—N5—H1N5115.8 (17)O2—C9—N4127.62 (15)
C11—N5—H2N5118.4 (18)O2—C9—C7128.89 (15)
H1N5—N5—H2N5125 (2)N4—C9—C7103.49 (14)
C6—C1—C2119.4 (2)C8—C10—H10A109.5
C6—C1—H1A120.3C8—C10—H10B109.5
C2—C1—H1A120.3H10A—C10—H10B109.5
C3—C2—C1120.0 (2)C8—C10—H10C109.5
C3—C2—H2A120.0H10A—C10—H10C109.5
C1—C2—H2A120.0H10B—C10—H10C109.5
C2—C3—C4121.02 (19)N5—C11—N4114.13 (15)
C2—C3—H3A119.5N5—C11—S1124.15 (14)
C4—C3—H3A119.5N4—C11—S1121.72 (13)
C3—C4—C5119.66 (19)O1—C12—H12A109.5
C3—C4—H4A120.2O1—C12—H12B109.5
C5—C4—H4A120.2H12A—C12—H12B109.5
O1—C5—C4126.05 (18)O1—C12—H12C109.5
O1—C5—C6114.59 (16)H12A—C12—H12C109.5
C4—C5—C6119.36 (18)H12B—C12—H12C109.5
C6—N1—N2—C7−179.10 (17)N1—N2—C7—C91.2 (3)
C8—N3—N4—C11−178.33 (16)N4—N3—C8—C7−0.7 (2)
C8—N3—N4—C9−0.3 (2)N4—N3—C8—C10176.20 (18)
C6—C1—C2—C3−0.7 (4)N2—C7—C8—N3−179.65 (18)
C1—C2—C3—C40.1 (4)C9—C7—C8—N31.3 (2)
C2—C3—C4—C50.3 (4)N2—C7—C8—C103.7 (3)
C12—O1—C5—C4−3.6 (3)C9—C7—C8—C10−175.4 (2)
C12—O1—C5—C6176.1 (2)C11—N4—C9—O2−1.5 (3)
C3—C4—C5—O1179.7 (2)N3—N4—C9—O2−179.33 (18)
C3—C4—C5—C60.0 (3)C11—N4—C9—C7178.88 (16)
C2—C1—C6—C50.9 (4)N3—N4—C9—C71.00 (19)
C2—C1—C6—N1−179.2 (2)N2—C7—C9—O20.0 (3)
O1—C5—C6—C1179.7 (2)C8—C7—C9—O2179.03 (19)
C4—C5—C6—C1−0.6 (3)N2—C7—C9—N4179.64 (18)
O1—C5—C6—N1−0.2 (3)C8—C7—C9—N4−1.31 (19)
C4—C5—C6—N1179.53 (19)C9—N4—C11—N54.3 (3)
N2—N1—C6—C112.2 (3)N3—N4—C11—N5−177.95 (17)
N2—N1—C6—C5−167.88 (17)C9—N4—C11—S1−176.08 (14)
N1—N2—C7—C8−177.67 (17)N3—N4—C11—S11.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O20.85 (3)2.13 (3)2.775 (2)133 (2)
N5—H2N5···O20.89 (3)1.98 (3)2.715 (3)138 (3)
N5—H1N5···S1i0.86 (3)2.52 (3)3.366 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O20.85 (3)2.13 (3)2.775 (2)133 (2)
N5—H2N5⋯O20.89 (3)1.98 (3)2.715 (3)138 (3)
N5—H1N5⋯S1i0.86 (3)2.52 (3)3.366 (2)168 (2)

Symmetry code: (i) .

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