Literature DB >> 22064793

Aqua-(2,9-dimethyl-1,10-phenanthroline-κN,N')diformato-κO,O';κO-nickel(II) monohydrate.

Ping Xia, Jian-Li Lin, Sheng-Liang Ni.   

Abstract

The asymmetric unit of the title compound, [Ni(HCO(2))(2)(C(14)H(12)N(2))(H(2)O)]·H(2)O, contains a mononuclear complex mol-ecule hydrogen bonded to a lattice water mol-ecule. The Ni(II) atom exhibits a distorted octa-hedral coordination geometry formed by the N atoms from a 2,9-dimethyl-1,10-phenanthroline ligand, two O atoms of a chelating formate anion, one aqua O atom and one O atom of a coordinating formate anion. The mol-ecules are assembled into chains extending along [100] through by O-H⋯O hydrogen bonds. The supra-molecular chains are further linked into layers parallel to (011) by weak π-π packing inter-actions [centroid-centroid separation = 3.768 (2) Å]. The resulting layers are stacked to meet the requirement of close-packing patterns.

Entities:  

Year:  2011        PMID: 22064793      PMCID: PMC3200966          DOI: 10.1107/S1600536811030558

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to supra­molecular architectures, see: Moulton & Zaworotko (2001 ▶); Aakeroy & Seddon (1993 ▶). For related structures, see: Go et al. (2004 ▶); Wang et al. (2006) ▶; Ni et al. (2011 ▶).

Experimental

Crystal data

[Ni(HCO2)2(C14H12N2)(H2O)]·H2O M = 393.03 Triclinic, a = 7.3992 (15) Å b = 10.373 (2) Å c = 11.442 (2) Å α = 82.42 (3)° β = 81.77 (3)° γ = 76.10 (3)° V = 839.3 (3) Å3 Z = 2 Mo Kα radiation μ = 1.19 mm−1 T = 298 K 0.30 × 0.20 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.750, T max = 0.821 8265 measured reflections 3785 independent reflections 3214 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.118 S = 1.22 3785 reflections 226 parameters H-atom parameters constrained Δρmax = 0.69 e Å−3 Δρmin = −0.67 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030558/zk2016sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030558/zk2016Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(HCO2)2(C14H12N2)(H2O)]·H2OZ = 2
Mr = 393.03F(000) = 408
Triclinic, P1Dx = 1.555 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3992 (15) ÅCell parameters from 25 reflections
b = 10.373 (2) Åθ = 3.1–27.4°
c = 11.442 (2) ŵ = 1.19 mm1
α = 82.42 (3)°T = 298 K
β = 81.77 (3)°Block, green
γ = 76.10 (3)°0.30 × 0.20 × 0.15 mm
V = 839.3 (3) Å3
Rigaku R-AXIS RAPID diffractometer3785 independent reflections
Radiation source: fine-focus sealed tube3214 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 27.4°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −9→8
Tmin = 0.750, Tmax = 0.821k = −13→13
8265 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.118w = 1/[σ2(Fo2) + (0.0328P)2 + 1.2744P] where P = (Fo2 + 2Fc2)/3
S = 1.22(Δ/σ)max = 0.001
3785 reflectionsΔρmax = 0.69 e Å3
226 parametersΔρmin = −0.67 e Å3
0 restraintsExtinction correction: SHELXL
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0015 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.77473 (5)0.18268 (4)0.77154 (3)0.02776 (13)
O10.8178 (4)−0.0310 (2)0.7920 (3)0.0540 (7)
O20.7827 (4)0.0786 (3)0.9468 (2)0.0494 (6)
C10.8093 (6)−0.0283 (4)0.9011 (4)0.0535 (10)
H1A0.8232−0.10820.95000.064*
O30.4915 (3)0.1977 (2)0.7917 (2)0.0395 (5)
O40.2105 (3)0.3030 (3)0.8671 (2)0.0485 (6)
C20.3833 (5)0.2772 (4)0.8554 (3)0.0418 (8)
H2A0.43860.32280.89970.050*
O51.0628 (3)0.1559 (2)0.7442 (2)0.0378 (5)
H521.12560.07730.75810.045*
H511.10240.20250.78760.045*
O60.6484 (4)0.0613 (3)0.1914 (2)0.0544 (7)
H610.68810.06620.11760.065*
H620.58870.00960.23560.065*
N10.7660 (3)0.3828 (2)0.7853 (2)0.0271 (5)
N20.7565 (4)0.2549 (3)0.5945 (2)0.0296 (5)
C30.7791 (6)0.3669 (4)0.9991 (3)0.0460 (9)
H3A0.77390.27660.99240.069*
H3B0.67270.40741.05090.069*
H3C0.89220.36721.03100.069*
C40.7770 (4)0.4441 (3)0.8789 (3)0.0334 (7)
C50.7852 (5)0.5793 (4)0.8660 (4)0.0456 (9)
H5A0.79510.61940.93210.055*
C60.7789 (6)0.6518 (4)0.7588 (4)0.0493 (9)
H6A0.78250.74150.75160.059*
C70.7668 (5)0.5908 (3)0.6584 (3)0.0393 (7)
C80.7604 (6)0.6596 (4)0.5418 (4)0.0530 (10)
H8A0.76290.74960.53050.064*
C90.7509 (6)0.5968 (4)0.4485 (4)0.0527 (10)
H9A0.74580.64410.37360.063*
C100.7485 (5)0.4584 (4)0.4624 (3)0.0412 (8)
C110.7418 (6)0.3871 (5)0.3671 (3)0.0530 (10)
H11A0.73820.43000.29060.064*
C120.7406 (6)0.2557 (5)0.3877 (3)0.0530 (10)
H12A0.73600.20850.32490.064*
C130.7465 (5)0.1901 (4)0.5032 (3)0.0392 (7)
C140.7372 (7)0.0465 (4)0.5273 (4)0.0602 (11)
H14A0.74390.01830.61020.090*
H14B0.8404−0.00660.48150.090*
H14C0.62140.03580.50570.090*
C150.7550 (4)0.3872 (3)0.5750 (3)0.0306 (6)
C160.7622 (4)0.4551 (3)0.6761 (3)0.0301 (6)
U11U22U33U12U13U23
Ni0.0320 (2)0.0254 (2)0.0280 (2)−0.01022 (15)−0.00438 (15)−0.00207 (14)
O10.078 (2)0.0316 (13)0.0548 (17)−0.0161 (13)−0.0093 (14)−0.0044 (11)
O20.0675 (18)0.0447 (15)0.0364 (13)−0.0178 (13)−0.0080 (12)0.0058 (11)
C10.070 (3)0.0368 (19)0.052 (2)−0.0164 (18)−0.0105 (19)0.0139 (17)
O30.0273 (11)0.0512 (14)0.0448 (13)−0.0162 (10)−0.0022 (10)−0.0107 (11)
O40.0317 (13)0.0651 (17)0.0524 (15)−0.0129 (12)−0.0027 (11)−0.0177 (13)
C20.0361 (18)0.056 (2)0.0394 (18)−0.0179 (16)−0.0018 (14)−0.0144 (16)
O50.0293 (11)0.0398 (12)0.0462 (13)−0.0070 (9)−0.0104 (10)−0.0054 (10)
O60.0642 (18)0.0550 (16)0.0460 (15)−0.0148 (14)−0.0076 (13)−0.0080 (12)
N10.0247 (12)0.0272 (12)0.0303 (12)−0.0059 (10)−0.0023 (9)−0.0072 (9)
N20.0316 (13)0.0338 (13)0.0248 (12)−0.0104 (11)−0.0033 (10)−0.0028 (10)
C30.052 (2)0.061 (2)0.0322 (17)−0.0201 (18)−0.0079 (15)−0.0130 (16)
C40.0290 (15)0.0397 (17)0.0350 (16)−0.0114 (13)0.0011 (12)−0.0147 (13)
C50.045 (2)0.045 (2)0.054 (2)−0.0166 (16)0.0011 (16)−0.0251 (17)
C60.054 (2)0.0294 (17)0.067 (3)−0.0139 (16)0.0035 (19)−0.0152 (16)
C70.0356 (17)0.0284 (16)0.053 (2)−0.0085 (13)−0.0034 (15)−0.0005 (14)
C80.057 (2)0.0317 (18)0.066 (3)−0.0117 (17)−0.005 (2)0.0130 (17)
C90.056 (2)0.052 (2)0.045 (2)−0.0155 (19)−0.0094 (18)0.0235 (18)
C100.0361 (18)0.050 (2)0.0353 (17)−0.0103 (15)−0.0067 (14)0.0071 (15)
C110.057 (2)0.075 (3)0.0253 (17)−0.014 (2)−0.0086 (16)0.0037 (17)
C120.062 (3)0.074 (3)0.0280 (17)−0.021 (2)−0.0083 (16)−0.0125 (17)
C130.0382 (18)0.0484 (19)0.0346 (17)−0.0101 (15)−0.0039 (13)−0.0165 (14)
C140.085 (3)0.057 (2)0.052 (2)−0.030 (2)−0.009 (2)−0.0245 (19)
C150.0275 (15)0.0337 (15)0.0304 (15)−0.0087 (12)−0.0043 (12)0.0016 (12)
C160.0304 (15)0.0274 (14)0.0335 (15)−0.0106 (12)−0.0021 (12)−0.0006 (11)
Ni—O32.046 (2)C3—H3C0.9600
Ni—O52.066 (2)C4—C51.405 (5)
Ni—N22.076 (2)C5—C61.352 (6)
Ni—N12.087 (2)C5—H5A0.9300
Ni—O12.148 (3)C6—C71.406 (5)
Ni—O22.150 (2)C6—H6A0.9300
Ni—C12.457 (4)C7—C161.403 (4)
O1—C11.244 (5)C7—C81.429 (5)
O2—C11.249 (5)C8—C91.341 (6)
C1—H1A0.9300C8—H8A0.9300
O3—C21.235 (4)C9—C101.428 (5)
O4—C21.233 (4)C9—H9A0.9300
C2—H2A0.9300C10—C151.399 (4)
O5—H520.8426C10—C111.408 (5)
O5—H510.8597C11—C121.354 (6)
O6—H610.8524C11—H11A0.9300
O6—H620.8469C12—C131.406 (5)
N1—C41.337 (4)C12—H12A0.9300
N1—C161.370 (4)C13—C141.495 (5)
N2—C131.334 (4)C14—H14A0.9600
N2—C151.359 (4)C14—H14B0.9600
C3—C41.497 (5)C14—H14C0.9600
C3—H3A0.9600C15—C161.444 (4)
C3—H3B0.9600
O3—Ni—O5175.85 (9)C4—C3—H3C109.5
O3—Ni—N288.19 (10)H3A—C3—H3C109.5
O5—Ni—N290.52 (10)H3B—C3—H3C109.5
O3—Ni—N197.19 (10)N1—C4—C5121.0 (3)
O5—Ni—N186.51 (10)N1—C4—C3119.0 (3)
N2—Ni—N181.48 (10)C5—C4—C3119.9 (3)
O3—Ni—O189.42 (11)C6—C5—C4121.0 (3)
O5—Ni—O187.32 (11)C6—C5—H5A119.5
N2—Ni—O1110.07 (11)C4—C5—H5A119.5
N1—Ni—O1166.96 (10)C5—C6—C7119.6 (3)
O3—Ni—O288.37 (11)C5—C6—H6A120.2
O5—Ni—O292.29 (11)C7—C6—H6A120.2
N2—Ni—O2170.43 (10)C16—C7—C6117.0 (3)
N1—Ni—O2107.82 (10)C16—C7—C8119.6 (3)
O1—Ni—O260.97 (11)C6—C7—C8123.4 (3)
O3—Ni—C188.83 (13)C9—C8—C7121.2 (3)
O5—Ni—C189.66 (13)C9—C8—H8A119.4
N2—Ni—C1140.41 (13)C7—C8—H8A119.4
N1—Ni—C1138.01 (12)C8—C9—C10120.9 (3)
O1—Ni—C130.42 (12)C8—C9—H9A119.6
O2—Ni—C130.54 (12)C10—C9—H9A119.6
C1—O1—Ni88.6 (2)C15—C10—C11117.1 (3)
C1—O2—Ni88.4 (2)C15—C10—C9119.7 (3)
O1—C1—O2122.0 (3)C11—C10—C9123.2 (3)
O1—C1—Ni60.93 (19)C12—C11—C10119.6 (3)
O2—C1—Ni61.03 (18)C12—C11—H11A120.2
O1—C1—H1A119.0C10—C11—H11A120.2
O2—C1—H1A119.0C11—C12—C13120.5 (3)
Ni—C1—H1A179.7C11—C12—H12A119.8
C2—O3—Ni121.6 (2)C13—C12—H12A119.8
O4—C2—O3127.6 (3)N2—C13—C12121.0 (3)
O4—C2—H2A116.2N2—C13—C14118.2 (3)
O3—C2—H2A116.2C12—C13—C14120.8 (3)
Ni—O5—H52116.4C13—C14—H14A109.5
Ni—O5—H51111.9C13—C14—H14B109.5
H52—O5—H51104.9H14A—C14—H14B109.5
H61—O6—H62132.8C13—C14—H14C109.5
C4—N1—C16118.4 (3)H14A—C14—H14C109.5
C4—N1—Ni130.5 (2)H14B—C14—H14C109.5
C16—N1—Ni110.88 (19)N2—C15—C10122.9 (3)
C13—N2—C15118.9 (3)N2—C15—C16117.6 (3)
C13—N2—Ni129.2 (2)C10—C15—C16119.5 (3)
C15—N2—Ni111.95 (19)N1—C16—C7123.0 (3)
C4—C3—H3A109.5N1—C16—C15118.0 (3)
C4—C3—H3B109.5C7—C16—C15119.0 (3)
H3A—C3—H3B109.5
D—H···AD—HH···AD···AD—H···A
O5—H51···O4i0.861.852.703 (3)173.3
O5—H52···O6ii0.842.032.808 (4)154.2
O6—H61···O2iii0.851.982.830 (4)179.3
O6—H62···O3iv0.852.433.077 (4)133.4
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H51⋯O4i0.861.852.703 (3)173.3
O5—H52⋯O6ii0.842.032.808 (4)154.2
O6—H61⋯O2iii0.851.982.830 (4)179.3
O6—H62⋯O3iv0.852.433.077 (4)133.4

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A chain of changes: influence of noncovalent interactions on the one-dimensional structures of nickel(II) dicarboxylate coordination polymers with chelating aromatic amine ligands.

Authors:  YongBok Go; Xiqu Wang; Ekaterina V Anokhina; Allan J Jacobson
Journal:  Inorg Chem       Date:  2004-08-23       Impact factor: 5.165

  3 in total

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