Literature DB >> 22064572

1-Methyl-3-(4-chloro-benzo-yl)imidazo[1,2-a]pyridin-1-ium-2-olate.

Victor B Rybakov1, Eugene V Babaev.   

Abstract

In the mol-ecule of the title compound, C(15)H(11)ClN(2)O(2), the nine-membered heterobicycle is approximately planar [largest deviation from least-squares plane = 0.012 (2) Å] and forms a dihedral angle of 51.14 (8)° with the plane of the 4-chloro-phenyl group. There is a non-classical intra-molecular hydrogen bond between the pyridine α-H atom and the O atom of the benzoyl group. The crystal structure is stabilized by weak C-H⋯O and C-H⋯Cl inter-actions involving the 'olate' O atom and the Cl atom attached to the benzoyl group as acceptors.

Entities:  

Year:  2011        PMID: 22064572      PMCID: PMC3201236          DOI: 10.1107/S1600536811039614

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Friedman et al. (1978 ▶); Rybakov et al. (1999 ▶, 2000a ▶,b ▶, 2001 ▶, 2002 ▶). For the synthesis of 1-methyl-2-oxo-2,3-dihydro­imidazopyridinium perchlorate, see: Sych & Gorb (1976 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C15H11ClN2O2 M = 286.71 Monoclinic, a = 8.190 (8) Å b = 13.914 (3) Å c = 11.675 (4) Å β = 102.38 (2)° V = 1299.5 (14) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 295 K 0.30 × 0.30 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 2675 measured reflections 2546 independent reflections 1486 reflections with I > 2σ(I) R int = 0.042 1 standard reflections every 200 reflections intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.107 S = 0.94 2546 reflections 182 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1994) ▶; cell refinement: CAD-4 Software ▶; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811039614/yk2022sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039614/yk2022Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039614/yk2022Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11ClN2O2F(000) = 592
Mr = 286.71Dx = 1.465 Mg m3
Monoclinic, P21/cMelting point = 479–481 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 8.190 (8) ÅCell parameters from 25 reflections
b = 13.914 (3) Åθ = 13.0–14.8°
c = 11.675 (4) ŵ = 0.30 mm1
β = 102.38 (2)°T = 295 K
V = 1299.5 (14) Å3Prism, green
Z = 40.30 × 0.30 × 0.30 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.042
Radiation source: fine-focus sealed tubeθmax = 26.0°, θmin = 2.3°
graphiteh = −10→9
non–profiled ω scansk = 0→17
2675 measured reflectionsl = 0→14
2546 independent reflections1 standard reflections every 200 reflections
1486 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 0.94w = 1/[σ2(Fo2) + (0.0433P)2] where P = (Fo2 + 2Fc2)/3
2546 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.0863 (3)0.54749 (15)0.22101 (19)0.0505 (6)
C20.1226 (3)0.45544 (18)0.1820 (2)0.0449 (6)
O20.0815 (2)0.38150 (13)0.22548 (16)0.0594 (5)
C30.2076 (3)0.47398 (16)0.0895 (2)0.0424 (6)
N40.2102 (2)0.57470 (13)0.07555 (17)0.0416 (5)
C50.2755 (3)0.62878 (19)−0.0013 (2)0.0521 (7)
H50.32440.5997−0.05740.063*
C60.2675 (4)0.7264 (2)0.0060 (3)0.0646 (9)
H60.31180.7641−0.04570.078*
C70.1947 (4)0.7704 (2)0.0887 (3)0.0690 (9)
H70.19030.83710.09200.083*
C80.1292 (4)0.71635 (19)0.1653 (3)0.0609 (8)
H80.08010.74530.22130.073*
C90.1377 (3)0.61773 (18)0.1577 (2)0.0469 (6)
C11−0.0063 (4)0.5623 (2)0.3124 (3)0.0725 (9)
H11A0.06960.57970.38400.109*
H11B−0.06360.50410.32400.109*
H11C−0.08630.61290.28950.109*
C300.2748 (3)0.40950 (17)0.0162 (2)0.0459 (6)
O300.3115 (3)0.43543 (13)−0.07607 (15)0.0659 (6)
C310.3064 (3)0.30759 (17)0.0552 (2)0.0390 (6)
C320.3762 (3)0.28280 (17)0.1699 (2)0.0451 (6)
H320.39550.33040.22710.054*
C330.4177 (3)0.18918 (18)0.2012 (2)0.0463 (6)
H330.46540.17330.27850.056*
C340.3869 (3)0.11962 (17)0.1154 (2)0.0450 (6)
Cl340.43791 (11)0.00078 (5)0.15427 (8)0.0725 (3)
C350.3144 (3)0.14142 (17)0.0010 (2)0.0478 (7)
H350.29140.0931−0.05520.057*
C360.2766 (3)0.23515 (18)−0.0291 (2)0.0460 (7)
H360.23050.2507−0.10680.055*
U11U22U33U12U13U23
N10.0450 (14)0.0641 (14)0.0448 (14)0.0060 (11)0.0150 (12)−0.0039 (12)
C20.0378 (16)0.0555 (15)0.0389 (15)0.0004 (12)0.0023 (13)−0.0033 (13)
O20.0603 (13)0.0647 (12)0.0568 (13)−0.0035 (10)0.0208 (11)0.0127 (10)
C30.0415 (15)0.0452 (13)0.0396 (15)0.0000 (11)0.0071 (13)0.0030 (11)
N40.0339 (12)0.0468 (11)0.0409 (12)0.0017 (9)0.0012 (10)0.0011 (10)
C50.0418 (17)0.0627 (17)0.0506 (17)0.0017 (13)0.0071 (14)0.0112 (14)
C60.050 (2)0.0561 (17)0.082 (2)−0.0012 (14)0.0015 (18)0.0165 (16)
C70.056 (2)0.0515 (17)0.089 (3)0.0079 (15)−0.0079 (19)−0.0010 (18)
C80.0476 (19)0.0582 (17)0.072 (2)0.0084 (14)0.0022 (17)−0.0111 (16)
C90.0372 (16)0.0568 (15)0.0460 (17)0.0101 (12)0.0071 (13)−0.0063 (13)
C110.069 (2)0.098 (2)0.057 (2)0.0132 (18)0.0286 (18)−0.0073 (18)
C300.0430 (16)0.0554 (16)0.0382 (16)−0.0002 (12)0.0060 (13)0.0004 (12)
O300.0985 (17)0.0675 (12)0.0383 (11)0.0132 (11)0.0289 (12)0.0086 (10)
C310.0336 (14)0.0519 (14)0.0291 (14)0.0011 (11)0.0012 (11)−0.0001 (11)
C320.0471 (17)0.0500 (14)0.0359 (15)−0.0021 (12)0.0037 (13)−0.0056 (12)
C330.0409 (16)0.0557 (15)0.0392 (15)0.0044 (12)0.0019 (12)0.0035 (13)
C340.0362 (15)0.0475 (14)0.0536 (17)0.0070 (11)0.0149 (14)0.0050 (13)
Cl340.0791 (6)0.0543 (4)0.0870 (7)0.0176 (4)0.0246 (5)0.0101 (4)
C350.0469 (17)0.0510 (15)0.0434 (16)0.0013 (12)0.0055 (13)−0.0132 (13)
C360.0412 (16)0.0596 (16)0.0343 (15)0.0038 (12)0.0016 (13)−0.0043 (12)
Cl34—C341.742 (2)C5—H50.9300
N4—C51.365 (3)C30—O301.233 (3)
N4—C91.370 (3)C30—C311.495 (3)
N4—C31.412 (3)C31—C321.382 (3)
C2—C31.428 (3)C31—C361.393 (3)
C3—C301.429 (3)C32—C331.376 (3)
C2—O21.226 (3)C32—H320.9300
C2—N11.412 (3)C33—C341.377 (3)
N1—C91.346 (3)C33—H330.9300
N1—C111.450 (3)C34—C351.374 (3)
C9—C81.378 (3)C35—C361.369 (3)
C8—C71.364 (4)C35—H350.9300
C8—H80.9300C36—H360.9300
C7—C61.382 (4)C11—H11A0.9600
C7—H70.9300C11—H11B0.9600
C6—C51.364 (4)C11—H11C0.9600
C6—H60.9300
C5—N4—C9120.6 (2)O30—C30—C3122.5 (2)
C5—N4—C3129.8 (2)O30—C30—C31119.0 (2)
C9—N4—C3109.5 (2)C3—C30—C31118.5 (2)
N4—C3—C2106.7 (2)C32—C31—C36118.5 (2)
N4—C3—C30122.5 (2)C32—C31—C30122.7 (2)
C2—C3—C30130.7 (2)C36—C31—C30118.6 (2)
O2—C2—N1122.1 (2)C33—C32—C31121.4 (2)
O2—C2—C3133.4 (2)C33—C32—H32119.3
N1—C2—C3104.5 (2)C31—C32—H32119.3
C9—N1—C2111.7 (2)C32—C33—C34118.4 (2)
C9—N1—C11125.1 (2)C32—C33—H33120.8
C2—N1—C11123.1 (2)C34—C33—H33120.8
N1—C9—N4107.5 (2)C35—C34—C33121.7 (2)
N1—C9—C8131.5 (3)C35—C34—Cl34119.5 (2)
N4—C9—C8121.0 (3)C33—C34—Cl34118.8 (2)
C7—C8—C9118.4 (3)C36—C35—C34119.1 (2)
C7—C8—H8120.8C36—C35—H35120.4
C9—C8—H8120.8C34—C35—H35120.4
C8—C7—C6120.2 (3)C35—C36—C31120.8 (2)
C8—C7—H7119.9C35—C36—H36119.6
C6—C7—H7119.9C31—C36—H36119.6
C5—C6—C7121.3 (3)N1—C11—H11A109.5
C5—C6—H6119.4N1—C11—H11B109.5
C7—C6—H6119.4N1—C11—H11C109.5
C6—C5—N4118.5 (3)H11A—C11—H11B109.5
C6—C5—H5120.7H11A—C11—H11C109.5
N4—C5—H5120.7H11B—C11—H11C109.5
C5—N4—C3—C2−179.6 (2)C8—C7—C6—C50.1 (5)
C9—N4—C3—C22.5 (3)C7—C6—C5—N4−0.2 (4)
C5—N4—C3—C30−2.0 (4)C9—N4—C5—C60.3 (4)
C9—N4—C3—C30−179.9 (2)C3—N4—C5—C6−177.5 (2)
N4—C3—C2—O2176.9 (3)N4—C3—C30—O30−13.5 (4)
C30—C3—C2—O2−0.5 (5)C2—C3—C30—O30163.5 (3)
N4—C3—C2—N1−2.5 (3)N4—C3—C30—C31164.6 (2)
C30—C3—C2—N1−179.8 (3)C2—C3—C30—C31−18.4 (4)
O2—C2—N1—C9−177.7 (2)O30—C30—C31—C32136.1 (3)
C3—C2—N1—C91.8 (3)C3—C30—C31—C32−42.1 (4)
O2—C2—N1—C11−2.0 (4)O30—C30—C31—C36−38.7 (4)
C3—C2—N1—C11177.5 (2)C3—C30—C31—C36143.1 (2)
C2—N1—C9—N4−0.3 (3)C36—C31—C32—C330.7 (4)
C11—N1—C9—N4−175.9 (2)C30—C31—C32—C33−174.1 (2)
C2—N1—C9—C8−179.5 (3)C31—C32—C33—C34−0.5 (4)
C11—N1—C9—C84.9 (5)C32—C33—C34—C35−0.9 (4)
C5—N4—C9—N1−179.5 (2)C32—C33—C34—Cl34−179.66 (19)
C3—N4—C9—N1−1.4 (3)C33—C34—C35—C362.0 (4)
C5—N4—C9—C8−0.2 (4)Cl34—C34—C35—C36−179.18 (19)
C3—N4—C9—C8177.9 (3)C34—C35—C36—C31−1.8 (4)
N1—C9—C8—C7179.3 (3)C32—C31—C36—C350.5 (4)
N4—C9—C8—C70.1 (4)C30—C31—C36—C35175.5 (2)
C9—C8—C7—C6−0.1 (5)
D—H···AD—HH···AD···AD—H···A
C5—H5···O300.932.302.863 (3)119.
C8—H8···O2i0.932.473.291 (4)148.
C32—H32···Cl34ii0.932.933.794 (3)155.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O300.932.302.863 (3)119
C8—H8⋯O2i0.932.473.291 (4)148
C32—H32⋯Cl34ii0.932.933.794 (3)155

Symmetry codes: (i) ; (ii) .

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