Literature DB >> 22064441

3-(1,3-Dithio-lan-2-yl-idene)-1-(4-meth-oxy-phen-yl)pyridine-2,4(1H,3H)-dione.

Yan-Chun Ma, Jin-Long Song.   

Abstract

In the title compound, C(15)H(13)NO(3)S(2), the dithiol-ane ring adopts a twisted conformation. The mol-ecule exhibits a V-shaped conformation, with a dihedral angle of 79.05 (7)° between the benzene ring and the pyridine ring. In the crystal, C-H⋯O inter-actions are observed.

Entities:  

Year:  2011        PMID: 22064441      PMCID: PMC3200629          DOI: 10.1107/S1600536811033009

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Li et al. (2008 ▶). For background to N-substituted pyridine compounds and their potential use in medicinal chemistry, see: Kim et al. (2008 ▶); Zhu et al. (2006 ▶)

Experimental

Crystal data

C15H13NO3S2 M = 319.40 Monoclinic, a = 5.322 (2) Å b = 27.521 (11) Å c = 10.065 (4) Å β = 100.831 (5)° V = 1448.0 (10) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 293 K 0.35 × 0.29 × 0.28 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.892, T max = 0.912 12346 measured reflections 2905 independent reflections 1973 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.121 S = 1.08 2905 reflections 190 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033009/ff2024sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033009/ff2024Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033009/ff2024Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13NO3S2Z = 4
Mr = 319.40F(000) = 664
Monoclinic, P21/nDx = 1.453 Mg m3
Hall symbol: -p 2ynMo Kα radiation, λ = 0.71073 Å
a = 5.322 (2) Åθ = 2.7–27.1°
b = 27.521 (11) ŵ = 0.38 mm1
c = 10.065 (4) ÅT = 293 K
β = 100.831 (5)°Block, yellow
V = 1448.0 (10) Å30.35 × 0.29 × 0.28 mm
Bruker APEXII CCD diffractometer2905 independent reflections
Radiation source: fine-focus sealed tube1973 reflections with I > 2σ(I)
graphiteRint = 0.053
ω scansθmax = 26.2°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −6→6
Tmin = 0.892, Tmax = 0.912k = −34→33
12346 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0581P)2] where P = (Fo2 + 2Fc2)/3
2905 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S20.24453 (13)0.13081 (2)1.20138 (7)0.0510 (2)
S10.45027 (15)0.05404 (2)1.05151 (8)0.0620 (3)
N10.6394 (4)0.23410 (7)0.9727 (2)0.0462 (5)
O20.3943 (3)0.21607 (6)1.12752 (18)0.0595 (5)
O10.7470 (4)0.09067 (7)0.89857 (19)0.0670 (5)
O30.5220 (4)0.43233 (7)1.0589 (2)0.0736 (6)
C130.4297 (4)0.11562 (9)1.0831 (2)0.0418 (6)
C110.5545 (4)0.14965 (8)1.0179 (2)0.0419 (6)
C40.6118 (5)0.28548 (8)0.9964 (2)0.0452 (6)
C120.5218 (4)0.20108 (8)1.0456 (2)0.0436 (6)
C50.3930 (5)0.30960 (10)0.9369 (3)0.0586 (7)
H50.26180.29290.88110.070*
C60.3694 (5)0.35832 (10)0.9602 (3)0.0629 (8)
H60.22190.37470.91970.075*
C30.8034 (5)0.31005 (9)1.0787 (2)0.0516 (6)
H30.95040.29361.11930.062*
C70.5642 (5)0.38348 (9)1.0438 (3)0.0528 (6)
C100.7144 (5)0.13424 (10)0.9219 (2)0.0484 (6)
C80.7884 (5)0.21885 (10)0.8818 (2)0.0522 (7)
H80.86490.24230.83620.063*
C90.8276 (5)0.17249 (10)0.8563 (3)0.0525 (6)
H90.93090.16460.79440.063*
C20.7809 (5)0.35902 (9)1.1022 (3)0.0566 (7)
H20.91300.37551.15780.068*
C140.2073 (6)0.03558 (11)1.1426 (4)0.0849 (10)
H14A0.04360.03411.08110.102*
H14B0.24660.00341.18000.102*
C150.1914 (7)0.06899 (10)1.2493 (4)0.0856 (11)
H15A0.31780.06041.32840.103*
H15B0.02360.06651.27330.103*
C10.7075 (8)0.45886 (12)1.1489 (4)0.1129 (14)
H1A0.65520.49221.15010.169*
H1B0.86880.45701.11970.169*
H1C0.72460.44541.23820.169*
U11U22U33U12U13U23
S20.0644 (4)0.0431 (4)0.0516 (4)−0.0063 (3)0.0267 (3)−0.0052 (3)
S10.0783 (5)0.0396 (4)0.0762 (5)0.0019 (3)0.0355 (4)−0.0043 (3)
N10.0534 (12)0.0425 (12)0.0455 (12)−0.0073 (9)0.0167 (10)−0.0016 (9)
O20.0830 (13)0.0423 (10)0.0643 (12)−0.0049 (9)0.0424 (11)−0.0071 (8)
O10.0835 (14)0.0528 (12)0.0735 (13)0.0071 (10)0.0375 (11)−0.0083 (10)
O30.0977 (16)0.0497 (12)0.0752 (14)0.0139 (11)0.0208 (12)0.0030 (10)
C130.0456 (14)0.0412 (13)0.0390 (13)0.0025 (10)0.0093 (10)−0.0032 (10)
C110.0436 (13)0.0427 (13)0.0409 (14)0.0002 (11)0.0112 (11)−0.0011 (11)
C40.0471 (14)0.0448 (15)0.0462 (14)−0.0043 (11)0.0152 (11)0.0055 (11)
C120.0495 (14)0.0439 (14)0.0389 (13)−0.0055 (11)0.0126 (11)−0.0008 (11)
C50.0442 (15)0.0590 (18)0.0696 (18)−0.0090 (13)0.0031 (13)0.0087 (14)
C60.0475 (16)0.0624 (18)0.079 (2)0.0068 (14)0.0109 (14)0.0181 (16)
C30.0512 (15)0.0476 (16)0.0530 (16)0.0020 (12)0.0020 (12)0.0010 (12)
C70.0675 (18)0.0476 (15)0.0478 (15)0.0033 (14)0.0220 (13)0.0053 (12)
C100.0489 (15)0.0541 (17)0.0440 (15)0.0022 (12)0.0136 (11)−0.0026 (12)
C80.0502 (15)0.0654 (18)0.0446 (15)−0.0103 (13)0.0179 (12)0.0012 (13)
C90.0538 (15)0.0616 (17)0.0471 (15)−0.0036 (13)0.0224 (12)−0.0070 (13)
C20.0629 (17)0.0517 (17)0.0518 (16)−0.0027 (13)0.0017 (13)−0.0031 (13)
C140.111 (3)0.0483 (17)0.110 (3)−0.0121 (17)0.058 (2)−0.0059 (18)
C150.126 (3)0.0514 (18)0.096 (2)−0.0232 (18)0.065 (2)−0.0066 (17)
C10.166 (4)0.060 (2)0.101 (3)0.015 (2)−0.005 (3)−0.026 (2)
S2—C131.733 (2)C6—C71.391 (4)
S2—C151.805 (3)C6—H60.9300
S1—C131.732 (3)C3—C21.377 (3)
S1—C141.793 (3)C3—H30.9300
N1—C81.384 (3)C7—C21.369 (3)
N1—C121.389 (3)C10—C91.434 (3)
N1—C41.446 (3)C8—C91.326 (3)
O2—C121.233 (3)C8—H80.9300
O1—C101.240 (3)C9—H90.9300
O3—C71.376 (3)C2—H20.9300
O3—C11.412 (4)C14—C151.429 (4)
C13—C111.383 (3)C14—H14A0.9700
C11—C121.459 (3)C14—H14B0.9700
C11—C101.466 (3)C15—H15A0.9700
C4—C31.366 (3)C15—H15B0.9700
C4—C51.376 (3)C1—H1A0.9600
C5—C61.371 (4)C1—H1B0.9600
C5—H50.9300C1—H1C0.9600
C13—S2—C1595.41 (12)O1—C10—C9122.5 (2)
C13—S1—C1496.14 (12)O1—C10—C11121.6 (2)
C8—N1—C12121.5 (2)C9—C10—C11116.0 (2)
C8—N1—C4119.61 (19)C9—C8—N1123.4 (2)
C12—N1—C4118.88 (19)C9—C8—H8118.3
C7—O3—C1117.8 (2)N1—C8—H8118.3
C11—C13—S1121.55 (18)C8—C9—C10121.5 (2)
C11—C13—S2123.24 (18)C8—C9—H9119.3
S1—C13—S2115.21 (13)C10—C9—H9119.3
C13—C11—C12118.8 (2)C7—C2—C3120.0 (2)
C13—C11—C10120.5 (2)C7—C2—H2120.0
C12—C11—C10120.8 (2)C3—C2—H2120.0
C3—C4—C5120.0 (2)C15—C14—S1110.6 (2)
C3—C4—N1119.8 (2)C15—C14—H14A109.5
C5—C4—N1120.3 (2)S1—C14—H14A109.5
O2—C12—N1119.6 (2)C15—C14—H14B109.5
O2—C12—C11123.5 (2)S1—C14—H14B109.5
N1—C12—C11116.9 (2)H14A—C14—H14B108.1
C6—C5—C4119.6 (2)C14—C15—S2111.8 (2)
C6—C5—H5120.2C14—C15—H15A109.3
C4—C5—H5120.2S2—C15—H15A109.3
C5—C6—C7120.6 (2)C14—C15—H15B109.3
C5—C6—H6119.7S2—C15—H15B109.3
C7—C6—H6119.7H15A—C15—H15B107.9
C4—C3—C2120.6 (2)O3—C1—H1A109.5
C4—C3—H3119.7O3—C1—H1B109.5
C2—C3—H3119.7H1A—C1—H1B109.5
C2—C7—O3125.1 (3)O3—C1—H1C109.5
C2—C7—C6119.2 (2)H1A—C1—H1C109.5
O3—C7—C6115.8 (2)H1B—C1—H1C109.5
D—H···AD—HH···AD···AD—H···A
C8—H8···O2i0.932.423.259 (3)150
C14—H14a···O1ii0.972.6853.475 (4)139
C14—H14b···O1iii0.972.7093.513 (4)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O2i0.932.423.259 (3)150

Symmetry code: (i) .

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