Literature DB >> 22064322

Bis(cyanamide-κN)[4-(1H-imidazol-1-yl)phenol-κN]bis-(nitrato-κO)copper(II).

Rui-Jin Yu, Bin Deng.   

Abstract

A pair of linear cyanamide (NCNH(2)) ligands, two monodentate 4-(1H-imidazol-1-yl)phenol (L) ligands and two nitrate anions link the Cu(II) atom into a mononuclear unit, [Cu(NO(3))(2)(C(9)H(8)N(2)O)(2)(NCNH(2))(2)]. The coordination polyhedron of the Cu atom is an elongated octa-hedron distorted by Jahn-Teller effects. Inter-molecular O-H⋯O, O-H⋯N, N-H⋯O and N-H⋯N hydrogen-bonding inter-actions link these units into a three-dimensional supra-molecular architecture.

Entities:  

Year:  2011        PMID: 22064322      PMCID: PMC3200852          DOI: 10.1107/S1600536811032399

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to related compounds, see: Ferlay et al. (1995 ▶); Ribas et al. (1999 ▶). For related structures, see: Becker et al. (2000 ▶); Berger & Schnick (1994 ▶); Liao & Dronskowski (2006 ▶); Liu et al. (2005 ▶); Meyer et al. (2000 ▶); Chaudhuri et al. (1985 ▶); Tanabe et al. (2002 ▶); Yuan et al. (2004 ▶, 2007 ▶).

Experimental

Crystal data

[Cu(NO3)2(C9H8N2O)2(CH2N2)2] M = 592.00 Triclinic, a = 8.2235 (7) Å b = 8.7144 (8) Å c = 9.4553 (9) Å α = 110.808 (1)° β = 96.696 (2)° γ = 98.883 (2)° V = 614.92 (10) Å3 Z = 1 Mo Kα radiation μ = 0.96 mm−1 T = 273 K 0.25 × 0.21 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.796, T max = 0.847 4951 measured reflections 2396 independent reflections 2229 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.105 S = 1.07 2396 reflections 178 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811032399/pk2338sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032399/pk2338Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NO3)2(C9H8N2O)2(CH2N2)2]Z = 1
Mr = 592.00F(000) = 303
Triclinic, P1Dx = 1.599 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2235 (7) ÅCell parameters from 2396 reflections
b = 8.7144 (8) Åθ = 2.4–26.0°
c = 9.4553 (9) ŵ = 0.96 mm1
α = 110.808 (1)°T = 273 K
β = 96.696 (2)°Block, blue
γ = 98.883 (2)°0.25 × 0.21 × 0.18 mm
V = 614.92 (10) Å3
Bruker SMART CCD area-detector diffractometer2396 independent reflections
Radiation source: fine-focus sealed tube2229 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −9→10
Tmin = 0.796, Tmax = 0.847k = −10→10
4951 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.059P)2 + 0.2239P] where P = (Fo2 + 2Fc2)/3
2396 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.50000.00000.03730 (17)
O11.0200 (2)1.3124 (2)0.3638 (2)0.0522 (5)
HO11.05591.30390.28220.078*
O30.1612 (2)0.3321 (3)0.1247 (2)0.0588 (5)
O40.3655 (3)0.4115 (4)0.3168 (3)0.0738 (7)
O20.4149 (3)0.4075 (3)0.0983 (2)0.0598 (5)
N1−0.1364 (3)0.5376 (3)0.1629 (3)0.0465 (5)
N2−0.2913 (3)0.5888 (3)0.3748 (3)0.0516 (6)
HN2B−0.38760.52300.35780.062*
HN2A−0.23310.60830.46360.062*
N30.1547 (3)0.7184 (2)0.1239 (2)0.0390 (5)
N40.3757 (2)0.9254 (2)0.2240 (2)0.0389 (5)
N50.3155 (3)0.3834 (3)0.1788 (3)0.0433 (5)
C10.1064 (3)0.8598 (3)0.2122 (3)0.0473 (6)
H1−0.00250.86630.22740.057*
C20.2407 (3)0.9884 (3)0.2740 (3)0.0484 (7)
H20.24171.09810.33780.058*
C30.3189 (3)0.7628 (3)0.1334 (3)0.0392 (6)
H30.38530.69100.08410.047*
C40.5449 (3)1.0196 (3)0.2591 (3)0.0372 (5)
C50.6081 (3)1.1383 (3)0.4066 (3)0.0459 (6)
H50.54321.15330.48280.055*
C60.7685 (3)1.2339 (3)0.4393 (3)0.0460 (6)
H60.81221.31300.53810.055*
C70.8639 (3)1.2124 (3)0.3258 (3)0.0393 (6)
C80.8007 (3)1.0926 (3)0.1790 (3)0.0427 (6)
H80.86561.07740.10280.051*
C90.6406 (3)0.9957 (3)0.1462 (3)0.0415 (6)
H90.59800.91460.04810.050*
C10−0.2100 (3)0.5568 (3)0.2602 (3)0.0387 (6)
U11U22U33U12U13U23
Cu10.0265 (2)0.0408 (3)0.0357 (3)−0.00682 (16)0.00593 (17)0.00971 (18)
O10.0305 (10)0.0649 (12)0.0477 (11)−0.0127 (8)0.0005 (8)0.0169 (9)
O30.0357 (11)0.0773 (14)0.0555 (12)−0.0089 (9)0.0010 (9)0.0269 (10)
O40.0382 (12)0.125 (2)0.0533 (13)−0.0089 (12)0.0036 (10)0.0399 (13)
O20.0486 (12)0.0711 (13)0.0574 (13)0.0021 (10)0.0240 (10)0.0215 (10)
N10.0330 (12)0.0554 (13)0.0397 (12)−0.0069 (10)0.0084 (10)0.0108 (10)
N20.0368 (12)0.0724 (15)0.0368 (12)0.0016 (11)0.0091 (10)0.0138 (11)
N30.0290 (11)0.0387 (11)0.0431 (12)−0.0023 (8)0.0051 (9)0.0127 (9)
N40.0281 (11)0.0352 (10)0.0461 (12)−0.0018 (8)0.0040 (9)0.0111 (9)
N50.0352 (12)0.0428 (11)0.0474 (13)0.0025 (9)0.0101 (10)0.0132 (10)
C10.0298 (13)0.0472 (14)0.0621 (17)0.0050 (11)0.0115 (12)0.0176 (13)
C20.0367 (14)0.0362 (13)0.0633 (18)0.0045 (10)0.0115 (13)0.0090 (12)
C30.0291 (12)0.0369 (12)0.0439 (14)−0.0008 (10)0.0059 (10)0.0098 (10)
C40.0279 (12)0.0341 (11)0.0448 (14)−0.0013 (9)0.0027 (10)0.0139 (10)
C50.0369 (14)0.0490 (14)0.0430 (14)−0.0049 (11)0.0085 (11)0.0125 (11)
C60.0392 (14)0.0472 (14)0.0378 (14)−0.0070 (11)0.0001 (11)0.0086 (11)
C70.0279 (12)0.0402 (12)0.0461 (14)−0.0017 (10)0.0002 (10)0.0175 (11)
C80.0338 (13)0.0488 (14)0.0415 (14)0.0039 (11)0.0086 (11)0.0139 (11)
C90.0342 (13)0.0382 (12)0.0405 (14)−0.0001 (10)−0.0006 (11)0.0069 (10)
C100.0281 (12)0.0408 (13)0.0386 (14)−0.0028 (10)−0.0008 (11)0.0114 (10)
Cu1—N11.974 (2)N4—C21.372 (3)
Cu1—N1i1.974 (2)N4—C41.438 (3)
Cu1—N31.9837 (19)C1—C21.349 (4)
Cu1—N3i1.9837 (19)C1—H10.9300
O1—C71.365 (3)C2—H20.9300
O1—HO10.8409C3—H30.9300
O3—N51.259 (3)C4—C91.375 (4)
O4—N51.244 (3)C4—C51.388 (4)
O2—N51.224 (3)C5—C61.383 (4)
N1—C101.136 (3)C5—H50.9300
N2—C101.308 (3)C6—C71.378 (4)
N2—HN2B0.8638C6—H60.9300
N2—HN2A0.8613C7—C81.386 (4)
N3—C31.329 (3)C8—C91.385 (3)
N3—C11.368 (3)C8—H80.9300
N4—C31.342 (3)C9—H90.9300
N1—Cu1—N1i180.00 (14)C1—C2—H2126.8
N1—Cu1—N389.82 (9)N4—C2—H2126.8
N1i—Cu1—N390.18 (8)N3—C3—N4110.7 (2)
N1—Cu1—N3i90.18 (9)N3—C3—H3124.7
N1i—Cu1—N3i89.82 (8)N4—C3—H3124.7
N3—Cu1—N3i180.0C9—C4—C5120.6 (2)
C7—O1—HO1108.5C9—C4—N4120.2 (2)
C10—N1—Cu1177.0 (2)C5—C4—N4119.1 (2)
C10—N2—HN2B116.0C6—C5—C4119.4 (3)
C10—N2—HN2A115.8C6—C5—H5120.3
HN2B—N2—HN2A112.2C4—C5—H5120.3
C3—N3—C1106.0 (2)C7—C6—C5120.2 (2)
C3—N3—Cu1129.22 (18)C7—C6—H6119.9
C1—N3—Cu1124.71 (17)C5—C6—H6119.9
C3—N4—C2107.3 (2)O1—C7—C6117.7 (2)
C3—N4—C4127.0 (2)O1—C7—C8122.1 (2)
C2—N4—C4125.7 (2)C6—C7—C8120.2 (2)
O2—N5—O4120.4 (2)C9—C8—C7119.7 (2)
O2—N5—O3120.9 (2)C9—C8—H8120.1
O4—N5—O3118.8 (2)C7—C8—H8120.1
C2—C1—N3109.6 (2)C4—C9—C8119.8 (2)
C2—C1—H1125.2C4—C9—H9120.1
N3—C1—H1125.2C8—C9—H9120.1
C1—C2—N4106.5 (2)N1—C10—N2176.6 (3)
D—H···AD—HH···AD···AD—H···A
O1—HO1···O3ii0.841.882.704 (3)168.
O1—HO1···O4ii0.842.512.970 (3)115.
O1—HO1···N5ii0.842.553.262 (3)143.
N2—HN2B···O4iii0.862.042.888 (3)168.
N2—HN2B···O2iii0.862.553.096 (3)122.
N2—HN2B···N5iii0.862.643.399 (3)148.
N2—HN2A···O1iv0.862.092.904 (3)157.
N2—HN2A···O4v0.862.503.049 (3)122.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—HO1⋯O3i0.841.882.704 (3)168
O1—HO1⋯O4i0.842.512.970 (3)115
O1—HO1⋯N5i0.842.553.262 (3)143
N2—HN2B⋯O4ii0.862.042.888 (3)168
N2—HN2B⋯O2ii0.862.553.096 (3)122
N2—HN2B⋯N5ii0.862.643.399 (3)148
N2—HN2A⋯O1iii0.862.092.904 (3)157
N2—HN2A⋯O4iv0.862.503.049 (3)122

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrogencyanamide-bridged one-dimensional polymers built on Mn(III)-Schiff base fragments: synthesis, structure, and magnetism.

Authors:  Mei Yuan; Fei Zhao; Wen Zhang; Feng Pan; Zhe-Ming Wang; Song Gao
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

3.  Synthesis, crystal structure, and properties of MnNCN, the first carbodiimide of a magnetic transition metal.

Authors:  Xiaohui Liu; Manuel Krott; Paul Müller; Chunhua Hu; Heiko Lueken; Richard Dronskowski
Journal:  Inorg Chem       Date:  2005-05-02       Impact factor: 5.165

4.  An antiferromagnetic Mn(III) chain bridged by hydrogencyanamide: [MnIII(5-Brsalen)(mu1,3-NCNH)]n.

Authors:  Mei Yuan; Song Gao; Hao-Ling Sun; Gang Su
Journal:  Inorg Chem       Date:  2004-12-27       Impact factor: 5.165

5.  Syntheses and skeletal transformations of NCNH- and NCN-bridged tetrairidium(III) cages.

Authors:  Yoshiaki Tanabe; Shigeki Kuwata; Youichi Ishii
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

6.  Crystal structures of extended europium cyanamide-carbodiimide compounds derived from different reaction conditions: temperature-controlled syntheses of In(0.08)Eu4(NCN)3I3, Eu8I9(CN)(NCN)3, and In(0.28)Eu12(NCN)5I(14.91).

Authors:  Wuping Liao; Richard Dronskowski
Journal:  Inorg Chem       Date:  2006-05-15       Impact factor: 5.165

  6 in total
  1 in total

1.  Crystal structure of catena-poly[[bis-(acetato-κO)copper(II)]-bis-[μ-4-(1H-imidazol-1-yl)phenol]-κ2N3:O2O:N3].

Authors:  Mehmet Poyraz; Musa Sarı
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-20
  1 in total

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