Literature DB >> 22059053

2-Amino-pyridin-3-ol.

Richard Betz1, Thomas Gerber, Eric Hosten, Henk Schalekamp.   

Abstract

The molecule of the title pyridine derivative, C(5)H(6)N(2)O, shows approximate C(s) symmetry. Intra-cyclic angles cover the range 118.34 (10)-123.11 (10)°. In the crystal, O-H⋯N, N-H⋯O and N-H⋯N hydrogen bonds connect the mol-ecules into double layers perpendicular to the a axis. The shortest centroid-centroid distance between two π-systems is 3.8887 (7) Å.

Entities:  

Year:  2011        PMID: 22059053      PMCID: PMC3200947          DOI: 10.1107/S1600536811034775

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 2,3-diamino­pyridine, see: Betz et al. (2011 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For general information about the chelate effect in coordination chemistry, see: Gade (1998 ▶).

Experimental

Crystal data

C5H6N2O M = 110.12 Monoclinic, a = 12.5310 (6) Å b = 3.8887 (2) Å c = 11.6042 (5) Å β = 113.139 (2)° V = 519.98 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 200 K 0.29 × 0.25 × 0.13 mm

Data collection

Bruker APEXII CCD diffractometer 4820 measured reflections 1289 independent reflections 1008 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.117 S = 1.13 1289 reflections 81 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811034775/bh2372sup1.cif Supplementary material file. DOI: 10.1107/S1600536811034775/bh2372Isup2.cdx Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034775/bh2372Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811034775/bh2372Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6N2OF(000) = 232
Mr = 110.12Dx = 1.407 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2447 reflections
a = 12.5310 (6) Åθ = 3.5–28.1°
b = 3.8887 (2) ŵ = 0.10 mm1
c = 11.6042 (5) ÅT = 200 K
β = 113.139 (2)°Block, brown
V = 519.98 (4) Å30.29 × 0.25 × 0.13 mm
Z = 4
Bruker APEXII CCD diffractometer1008 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 28.3°, θmin = 1.8°
φ and ω scansh = −15→16
4820 measured reflectionsk = −5→3
1289 independent reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0669P)2 + 0.0455P] where P = (Fo2 + 2Fc2)/3
1289 reflections(Δ/σ)max < 0.001
81 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.22 e Å3
0 constraints
xyzUiso*/Ueq
O10.36008 (7)0.7180 (3)0.48635 (7)0.0334 (3)
H10.32490.72620.53280.050*
N10.26183 (8)0.7983 (3)0.15240 (8)0.0262 (3)
N20.43131 (8)0.5713 (3)0.30122 (10)0.0290 (3)
H710.4673 (14)0.495 (4)0.3773 (16)0.037 (4)*
H720.4404 (14)0.444 (5)0.2414 (17)0.051 (5)*
C10.32537 (9)0.7224 (3)0.27173 (10)0.0223 (3)
C20.28799 (9)0.8073 (3)0.36913 (10)0.0233 (3)
C30.18289 (10)0.9681 (3)0.33747 (11)0.0273 (3)
H30.15581.02900.40060.033*
C40.11580 (10)1.0419 (3)0.21157 (11)0.0302 (3)
H40.04241.15090.18770.036*
C50.15829 (10)0.9537 (3)0.12361 (10)0.0300 (3)
H50.11271.00430.03820.036*
U11U22U33U12U13U23
O10.0280 (5)0.0579 (6)0.0161 (4)0.0062 (4)0.0109 (4)0.0035 (4)
N10.0277 (5)0.0355 (6)0.0170 (5)−0.0017 (4)0.0103 (4)0.0006 (4)
N20.0275 (5)0.0420 (7)0.0207 (5)0.0060 (4)0.0129 (4)0.0020 (4)
C10.0237 (6)0.0271 (6)0.0182 (5)−0.0031 (4)0.0106 (4)−0.0002 (4)
C20.0246 (6)0.0300 (6)0.0167 (5)−0.0025 (4)0.0096 (4)−0.0004 (4)
C30.0284 (6)0.0337 (7)0.0235 (6)−0.0001 (5)0.0143 (5)−0.0026 (5)
C40.0251 (6)0.0360 (7)0.0297 (6)0.0045 (5)0.0109 (5)0.0028 (5)
C50.0280 (6)0.0399 (7)0.0197 (5)0.0003 (5)0.0069 (4)0.0047 (5)
O1—C21.3496 (13)C1—C21.4219 (14)
O1—H10.8200C2—C31.3712 (16)
N1—C11.3312 (14)C3—C41.3994 (16)
N1—C51.3490 (15)C3—H30.9500
N2—C11.3667 (14)C4—C51.3675 (16)
N2—H710.870 (17)C4—H40.9500
N2—H720.895 (18)C5—H50.9500
C2—O1—H1109.5C3—C2—C1118.34 (10)
C1—N1—C5118.74 (9)C2—C3—C4119.53 (10)
C1—N2—H71117.7 (9)C2—C3—H3120.2
C1—N2—H72116.8 (11)C4—C3—H3120.2
H71—N2—H72115.2 (15)C5—C4—C3118.52 (11)
N1—C1—N2118.74 (9)C5—C4—H4120.7
N1—C1—C2121.74 (10)C3—C4—H4120.7
N2—C1—C2119.46 (10)N1—C5—C4123.11 (10)
O1—C2—C3125.40 (9)N1—C5—H5118.4
O1—C2—C1116.25 (10)C4—C5—H5118.4
C5—N1—C1—N2−178.69 (10)O1—C2—C3—C4−179.09 (11)
C5—N1—C1—C2−1.36 (18)C1—C2—C3—C40.32 (18)
N1—C1—C2—O1−179.79 (10)C2—C3—C4—C5−0.72 (19)
N2—C1—C2—O1−2.49 (17)C1—N1—C5—C40.94 (19)
N1—C1—C2—C30.74 (18)C3—C4—C5—N10.1 (2)
N2—C1—C2—C3178.05 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.821.852.6639 (12)172.
N2—H71···O1ii0.870 (17)2.276 (17)3.0184 (13)143.2 (12)
N2—H72···N2iii0.895 (18)2.358 (17)3.1249 (15)143.8 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N1i0.821.852.6639 (12)172
N2—H71⋯O1ii0.870 (17)2.276 (17)3.0184 (13)143.2 (12)
N2—H72⋯N2iii0.895 (18)2.358 (17)3.1249 (15)143.8 (15)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Pyridine-2,3-diamine.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Henk Schalekamp
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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