| Literature DB >> 22059053 |
Richard Betz1, Thomas Gerber, Eric Hosten, Henk Schalekamp.
Abstract
The molecule of the title pyridine derivative, C(5)H(6)N(2)O, shows approximate C(s) symmetry. Intra-cyclic angles cover the range 118.34 (10)-123.11 (10)°. In the crystal, O-H⋯N, N-H⋯O and N-H⋯N hydrogen bonds connect the mol-ecules into double layers perpendicular to the a axis. The shortest centroid-centroid distance between two π-systems is 3.8887 (7) Å.Entities:
Year: 2011 PMID: 22059053 PMCID: PMC3200947 DOI: 10.1107/S1600536811034775
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2447 reflections |
| θ = 3.5–28.1° | |
| µ = 0.10 mm−1 | |
| β = 113.139 (2)° | Block, brown |
| 0.29 × 0.25 × 0.13 mm | |
| Bruker APEXII CCD diffractometer | 1008 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.3°, θmin = 1.8° |
| φ and ω scans | |
| 4820 measured reflections | |
| 1289 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1289 reflections | (Δ/σ)max < 0.001 |
| 81 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| 0 constraints |
| O1 | 0.36008 (7) | 0.7180 (3) | 0.48635 (7) | 0.0334 (3) | |
| H1 | 0.3249 | 0.7262 | 0.5328 | 0.050* | |
| N1 | 0.26183 (8) | 0.7983 (3) | 0.15240 (8) | 0.0262 (3) | |
| N2 | 0.43131 (8) | 0.5713 (3) | 0.30122 (10) | 0.0290 (3) | |
| H71 | 0.4673 (14) | 0.495 (4) | 0.3773 (16) | 0.037 (4)* | |
| H72 | 0.4404 (14) | 0.444 (5) | 0.2414 (17) | 0.051 (5)* | |
| C1 | 0.32537 (9) | 0.7224 (3) | 0.27173 (10) | 0.0223 (3) | |
| C2 | 0.28799 (9) | 0.8073 (3) | 0.36913 (10) | 0.0233 (3) | |
| C3 | 0.18289 (10) | 0.9681 (3) | 0.33747 (11) | 0.0273 (3) | |
| H3 | 0.1558 | 1.0290 | 0.4006 | 0.033* | |
| C4 | 0.11580 (10) | 1.0419 (3) | 0.21157 (11) | 0.0302 (3) | |
| H4 | 0.0424 | 1.1509 | 0.1877 | 0.036* | |
| C5 | 0.15829 (10) | 0.9537 (3) | 0.12361 (10) | 0.0300 (3) | |
| H5 | 0.1127 | 1.0043 | 0.0382 | 0.036* |
| O1 | 0.0280 (5) | 0.0579 (6) | 0.0161 (4) | 0.0062 (4) | 0.0109 (4) | 0.0035 (4) |
| N1 | 0.0277 (5) | 0.0355 (6) | 0.0170 (5) | −0.0017 (4) | 0.0103 (4) | 0.0006 (4) |
| N2 | 0.0275 (5) | 0.0420 (7) | 0.0207 (5) | 0.0060 (4) | 0.0129 (4) | 0.0020 (4) |
| C1 | 0.0237 (6) | 0.0271 (6) | 0.0182 (5) | −0.0031 (4) | 0.0106 (4) | −0.0002 (4) |
| C2 | 0.0246 (6) | 0.0300 (6) | 0.0167 (5) | −0.0025 (4) | 0.0096 (4) | −0.0004 (4) |
| C3 | 0.0284 (6) | 0.0337 (7) | 0.0235 (6) | −0.0001 (5) | 0.0143 (5) | −0.0026 (5) |
| C4 | 0.0251 (6) | 0.0360 (7) | 0.0297 (6) | 0.0045 (5) | 0.0109 (5) | 0.0028 (5) |
| C5 | 0.0280 (6) | 0.0399 (7) | 0.0197 (5) | 0.0003 (5) | 0.0069 (4) | 0.0047 (5) |
| O1—C2 | 1.3496 (13) | C1—C2 | 1.4219 (14) |
| O1—H1 | 0.8200 | C2—C3 | 1.3712 (16) |
| N1—C1 | 1.3312 (14) | C3—C4 | 1.3994 (16) |
| N1—C5 | 1.3490 (15) | C3—H3 | 0.9500 |
| N2—C1 | 1.3667 (14) | C4—C5 | 1.3675 (16) |
| N2—H71 | 0.870 (17) | C4—H4 | 0.9500 |
| N2—H72 | 0.895 (18) | C5—H5 | 0.9500 |
| C2—O1—H1 | 109.5 | C3—C2—C1 | 118.34 (10) |
| C1—N1—C5 | 118.74 (9) | C2—C3—C4 | 119.53 (10) |
| C1—N2—H71 | 117.7 (9) | C2—C3—H3 | 120.2 |
| C1—N2—H72 | 116.8 (11) | C4—C3—H3 | 120.2 |
| H71—N2—H72 | 115.2 (15) | C5—C4—C3 | 118.52 (11) |
| N1—C1—N2 | 118.74 (9) | C5—C4—H4 | 120.7 |
| N1—C1—C2 | 121.74 (10) | C3—C4—H4 | 120.7 |
| N2—C1—C2 | 119.46 (10) | N1—C5—C4 | 123.11 (10) |
| O1—C2—C3 | 125.40 (9) | N1—C5—H5 | 118.4 |
| O1—C2—C1 | 116.25 (10) | C4—C5—H5 | 118.4 |
| C5—N1—C1—N2 | −178.69 (10) | O1—C2—C3—C4 | −179.09 (11) |
| C5—N1—C1—C2 | −1.36 (18) | C1—C2—C3—C4 | 0.32 (18) |
| N1—C1—C2—O1 | −179.79 (10) | C2—C3—C4—C5 | −0.72 (19) |
| N2—C1—C2—O1 | −2.49 (17) | C1—N1—C5—C4 | 0.94 (19) |
| N1—C1—C2—C3 | 0.74 (18) | C3—C4—C5—N1 | 0.1 (2) |
| N2—C1—C2—C3 | 178.05 (11) |
| H··· | ||||
| O1—H1···N1i | 0.82 | 1.85 | 2.6639 (12) | 172. |
| N2—H71···O1ii | 0.870 (17) | 2.276 (17) | 3.0184 (13) | 143.2 (12) |
| N2—H72···N2iii | 0.895 (18) | 2.358 (17) | 3.1249 (15) | 143.8 (15) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1i | 0.82 | 1.85 | 2.6639 (12) | 172 |
| N2—H71⋯O1ii | 0.870 (17) | 2.276 (17) | 3.0184 (13) | 143.2 (12) |
| N2—H72⋯N2iii | 0.895 (18) | 2.358 (17) | 3.1249 (15) | 143.8 (15) |
Symmetry codes: (i) ; (ii) ; (iii) .