Literature DB >> 22058993

Ethyl 4-(phenyl-sulfon-yl)piperazine-1-carboxyl-ate.

Mohammad T M Al-Dajani, Hassan H Adballah, Nornisah Mohamed, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(13)H(18)N(2)O(4)S, the piperazine ring adopts a chair conformation. The dihedral angle between the least-squares planes through the piperazine and benzene rings is 73.23 (10)°. In the crystal, there are no classical hydrogen bonds but stabilization is provided by weak C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 22058993      PMCID: PMC3200772          DOI: 10.1107/S1600536811033162

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperazine derivatives, see: Emami et al. (2006 ▶); Foroumadi et al. (2007 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C13H18N2O4S M = 298.35 Monoclinic, a = 6.1433 (5) Å b = 20.5966 (17) Å c = 12.5626 (8) Å β = 114.026 (3)° V = 1451.84 (19) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.58 × 0.38 × 0.17 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.875, T max = 0.961 16507 measured reflections 4255 independent reflections 3400 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.158 S = 1.04 4255 reflections 182 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033162/tk2781sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033162/tk2781Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033162/tk2781Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O4SF(000) = 632
Mr = 298.35Dx = 1.365 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5957 reflections
a = 6.1433 (5) Åθ = 2.7–29.7°
b = 20.5966 (17) ŵ = 0.24 mm1
c = 12.5626 (8) ÅT = 296 K
β = 114.026 (3)°Block, yellow
V = 1451.84 (19) Å30.58 × 0.38 × 0.17 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer4255 independent reflections
Radiation source: fine-focus sealed tube3400 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 30.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.875, Tmax = 0.961k = −29→24
16507 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0887P)2 + 0.3986P] where P = (Fo2 + 2Fc2)/3
4255 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.36299 (7)−0.120155 (19)0.94030 (3)0.03858 (14)
O10.3060 (3)−0.12052 (6)1.04000 (10)0.0517 (3)
O20.6074 (2)−0.12032 (7)0.95617 (12)0.0547 (3)
O3−0.1090 (3)0.07756 (8)0.52229 (12)0.0659 (4)
O4−0.3840 (2)0.07205 (8)0.59831 (12)0.0605 (4)
N10.2424 (2)−0.05482 (6)0.86538 (10)0.0346 (3)
N2−0.0094 (2)0.04239 (7)0.70682 (12)0.0412 (3)
C10.0247 (4)−0.21553 (9)0.86231 (18)0.0544 (4)
H1A−0.0323−0.19990.91560.065*
C2−0.0839 (4)−0.26783 (11)0.7902 (2)0.0749 (7)
H2A−0.2149−0.28770.79570.090*
C3−0.0001 (5)−0.29053 (11)0.7108 (2)0.0813 (8)
H3A−0.0749−0.32550.66300.098*
C40.1924 (5)−0.26197 (12)0.7021 (2)0.0785 (7)
H4A0.2477−0.27760.64820.094*
C50.3063 (4)−0.20992 (11)0.77261 (18)0.0595 (5)
H5A0.4375−0.19050.76660.071*
C60.2208 (3)−0.18732 (8)0.85247 (14)0.0421 (3)
C7−0.0086 (3)−0.04191 (8)0.84341 (13)0.0376 (3)
H7A−0.0340−0.05010.91350.045*
H7B−0.1126−0.07040.78240.045*
C8−0.0652 (3)0.02844 (8)0.80650 (14)0.0406 (3)
H8A−0.23280.03670.78620.049*
H8B0.02710.05670.87080.049*
C90.2364 (3)0.02842 (9)0.72652 (16)0.0472 (4)
H9A0.34310.05650.78730.057*
H9B0.25940.03670.65580.057*
C100.2931 (3)−0.04207 (9)0.76225 (14)0.0423 (3)
H10A0.1969−0.07030.69870.051*
H10B0.4597−0.05080.78040.051*
C11−0.1625 (3)0.06530 (8)0.60275 (14)0.0436 (4)
C12−0.5669 (4)0.09306 (12)0.48616 (18)0.0637 (5)
H12A−0.53000.07630.42330.076*
H12C−0.72060.07590.47690.076*
C13−0.5775 (7)0.16308 (16)0.4804 (3)0.1174 (13)
H13A−0.69710.17630.40640.176*
H13B−0.42540.17990.48910.176*
H13C−0.61700.17950.54180.176*
U11U22U33U12U13U23
S10.0397 (2)0.0421 (2)0.0286 (2)0.00210 (13)0.00853 (15)0.00111 (13)
O10.0710 (9)0.0526 (7)0.0297 (6)0.0009 (6)0.0187 (6)0.0025 (5)
O20.0368 (6)0.0628 (8)0.0521 (8)0.0056 (5)0.0053 (5)0.0070 (6)
O30.0668 (9)0.0926 (11)0.0443 (7)0.0176 (8)0.0288 (6)0.0217 (7)
O40.0449 (7)0.0863 (10)0.0481 (7)0.0147 (6)0.0167 (6)0.0204 (7)
N10.0342 (6)0.0394 (6)0.0305 (6)0.0018 (5)0.0136 (5)0.0023 (5)
N20.0382 (6)0.0502 (7)0.0376 (6)0.0057 (5)0.0179 (5)0.0107 (6)
C10.0568 (10)0.0465 (9)0.0550 (10)−0.0022 (8)0.0178 (8)0.0017 (8)
C20.0690 (14)0.0462 (11)0.0853 (17)−0.0098 (9)0.0065 (12)0.0024 (11)
C30.0979 (19)0.0399 (10)0.0691 (15)0.0061 (11)−0.0039 (13)−0.0143 (10)
C40.1010 (19)0.0625 (14)0.0608 (13)0.0193 (13)0.0213 (13)−0.0212 (11)
C50.0699 (12)0.0580 (11)0.0521 (10)0.0106 (9)0.0262 (9)−0.0092 (9)
C60.0470 (8)0.0366 (8)0.0374 (7)0.0065 (6)0.0119 (6)0.0000 (6)
C70.0366 (7)0.0439 (8)0.0364 (7)0.0003 (6)0.0192 (6)0.0037 (6)
C80.0435 (7)0.0449 (8)0.0373 (7)0.0074 (6)0.0205 (6)0.0040 (6)
C90.0376 (7)0.0587 (10)0.0494 (9)0.0020 (7)0.0220 (7)0.0164 (8)
C100.0380 (7)0.0556 (9)0.0386 (8)0.0075 (6)0.0210 (6)0.0076 (7)
C110.0455 (8)0.0477 (9)0.0375 (8)0.0038 (6)0.0169 (6)0.0053 (6)
C120.0510 (10)0.0811 (15)0.0494 (10)0.0032 (10)0.0104 (8)0.0043 (10)
C130.131 (3)0.077 (2)0.101 (2)0.0254 (18)0.003 (2)0.0136 (17)
S1—O11.4312 (13)C4—H4A0.9300
S1—O21.4320 (14)C5—C61.389 (2)
S1—N11.6365 (13)C5—H5A0.9300
S1—C61.7634 (17)C7—C81.518 (2)
O3—C111.210 (2)C7—H7A0.9700
O4—C111.346 (2)C7—H7B0.9700
O4—C121.465 (2)C8—H8A0.9700
N1—C101.4745 (18)C8—H8B0.9700
N1—C71.4755 (18)C9—C101.518 (2)
N2—C111.347 (2)C9—H9A0.9700
N2—C81.4554 (19)C9—H9B0.9700
N2—C91.455 (2)C10—H10A0.9700
C1—C61.387 (3)C10—H10B0.9700
C1—C21.391 (3)C12—C131.444 (4)
C1—H1A0.9300C12—H12A0.9700
C2—C31.377 (4)C12—H12C0.9700
C2—H2A0.9300C13—H13A0.9600
C3—C41.365 (4)C13—H13B0.9600
C3—H3A0.9300C13—H13C0.9600
C4—C51.385 (3)
O1—S1—O2119.62 (9)C8—C7—H7B109.9
O1—S1—N1107.02 (7)H7A—C7—H7B108.3
O2—S1—N1106.60 (7)N2—C8—C7110.26 (12)
O1—S1—C6107.94 (8)N2—C8—H8A109.6
O2—S1—C6108.04 (8)C7—C8—H8A109.6
N1—S1—C6107.00 (7)N2—C8—H8B109.6
C11—O4—C12115.91 (15)C7—C8—H8B109.6
C10—N1—C7112.47 (11)H8A—C8—H8B108.1
C10—N1—S1116.33 (10)N2—C9—C10109.69 (13)
C7—N1—S1116.73 (10)N2—C9—H9A109.7
C11—N2—C8126.01 (13)C10—C9—H9A109.7
C11—N2—C9120.02 (13)N2—C9—H9B109.7
C8—N2—C9113.96 (12)C10—C9—H9B109.7
C6—C1—C2118.1 (2)H9A—C9—H9B108.2
C6—C1—H1A121.0N1—C10—C9108.96 (13)
C2—C1—H1A121.0N1—C10—H10A109.9
C3—C2—C1120.9 (2)C9—C10—H10A109.9
C3—C2—H2A119.6N1—C10—H10B109.9
C1—C2—H2A119.6C9—C10—H10B109.9
C4—C3—C2120.2 (2)H10A—C10—H10B108.3
C4—C3—H3A119.9O3—C11—O4123.90 (15)
C2—C3—H3A119.9O3—C11—N2124.31 (16)
C3—C4—C5120.7 (2)O4—C11—N2111.78 (14)
C3—C4—H4A119.6C13—C12—O4110.2 (2)
C5—C4—H4A119.6C13—C12—H12A109.6
C4—C5—C6118.7 (2)O4—C12—H12A109.6
C4—C5—H5A120.7C13—C12—H12C109.6
C6—C5—H5A120.7O4—C12—H12C109.6
C1—C6—C5121.44 (18)H12A—C12—H12C108.1
C1—C6—S1119.99 (14)C12—C13—H13A109.5
C5—C6—S1118.55 (15)C12—C13—H13B109.5
N1—C7—C8108.73 (12)H13A—C13—H13B109.5
N1—C7—H7A109.9C12—C13—H13C109.5
C8—C7—H7A109.9H13A—C13—H13C109.5
N1—C7—H7B109.9H13B—C13—H13C109.5
O1—S1—N1—C10175.82 (11)N1—S1—C6—C585.65 (15)
O2—S1—N1—C1046.71 (13)C10—N1—C7—C8−58.52 (17)
C6—S1—N1—C10−68.69 (13)S1—N1—C7—C8163.26 (10)
O1—S1—N1—C7−47.57 (12)C11—N2—C8—C7122.68 (18)
O2—S1—N1—C7−176.67 (11)C9—N2—C8—C7−56.43 (18)
C6—S1—N1—C767.92 (12)N1—C7—C8—N255.05 (16)
C6—C1—C2—C3−0.5 (3)C11—N2—C9—C10−122.59 (17)
C1—C2—C3—C40.2 (4)C8—N2—C9—C1056.58 (19)
C2—C3—C4—C50.0 (4)C7—N1—C10—C959.10 (17)
C3—C4—C5—C60.0 (3)S1—N1—C10—C9−162.49 (11)
C2—C1—C6—C50.5 (3)N2—C9—C10—N1−55.79 (18)
C2—C1—C6—S1179.12 (15)C12—O4—C11—O32.6 (3)
C4—C5—C6—C1−0.3 (3)C12—O4—C11—N2−176.51 (17)
C4—C5—C6—S1−178.91 (16)C8—N2—C11—O3178.53 (18)
O1—S1—C6—C121.89 (16)C9—N2—C11—O3−2.4 (3)
O2—S1—C6—C1152.57 (14)C8—N2—C11—O4−2.4 (2)
N1—S1—C6—C1−92.99 (15)C9—N2—C11—O4176.66 (15)
O1—S1—C6—C5−159.47 (14)C11—O4—C12—C13−88.6 (3)
O2—S1—C6—C5−28.79 (17)
Cg1 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
C13—H13A···Cg1i0.962.973.900 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13ACg1i0.962.973.900 (4)165

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antibacterial activity of levofloxacin derivatives with certain bulky residues on piperazine ring.

Authors:  Alireza Foroumadi; Saeed Emami; Shahla Mansouri; Azita Javidnia; Nosratollah Saeid-Adeli; Farshad H Shirazi; Abbas Shafiee
Journal:  Eur J Med Chem       Date:  2007-01-14       Impact factor: 6.514

Review 3.  Structural features of new quinolones and relationship to antibacterial activity against Gram-positive bacteria.

Authors:  Saeed Emami; Abbas Shafiee; Alireza Foroumadi
Journal:  Mini Rev Med Chem       Date:  2006-04       Impact factor: 3.862

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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