| Literature DB >> 22058993 |
Mohammad T M Al-Dajani, Hassan H Adballah, Nornisah Mohamed, Madhukar Hemamalini, Hoong-Kun Fun.
Abstract
In the title compound, C(13)H(18)N(2)O(4)S, the piperazine ring adopts a chair conformation. The dihedral angle between the least-squares planes through the piperazine and benzene rings is 73.23 (10)°. In the crystal, there are no classical hydrogen bonds but stabilization is provided by weak C-H⋯π inter-actions.Entities:
Year: 2011 PMID: 22058993 PMCID: PMC3200772 DOI: 10.1107/S1600536811033162
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H18N2O4S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5957 reflections |
| θ = 2.7–29.7° | |
| µ = 0.24 mm−1 | |
| β = 114.026 (3)° | Block, yellow |
| 0.58 × 0.38 × 0.17 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 4255 independent reflections |
| Radiation source: fine-focus sealed tube | 3400 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 16507 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4255 reflections | (Δ/σ)max = 0.001 |
| 182 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.36299 (7) | −0.120155 (19) | 0.94030 (3) | 0.03858 (14) | |
| O1 | 0.3060 (3) | −0.12052 (6) | 1.04000 (10) | 0.0517 (3) | |
| O2 | 0.6074 (2) | −0.12032 (7) | 0.95617 (12) | 0.0547 (3) | |
| O3 | −0.1090 (3) | 0.07756 (8) | 0.52229 (12) | 0.0659 (4) | |
| O4 | −0.3840 (2) | 0.07205 (8) | 0.59831 (12) | 0.0605 (4) | |
| N1 | 0.2424 (2) | −0.05482 (6) | 0.86538 (10) | 0.0346 (3) | |
| N2 | −0.0094 (2) | 0.04239 (7) | 0.70682 (12) | 0.0412 (3) | |
| C1 | 0.0247 (4) | −0.21553 (9) | 0.86231 (18) | 0.0544 (4) | |
| H1A | −0.0323 | −0.1999 | 0.9156 | 0.065* | |
| C2 | −0.0839 (4) | −0.26783 (11) | 0.7902 (2) | 0.0749 (7) | |
| H2A | −0.2149 | −0.2877 | 0.7957 | 0.090* | |
| C3 | −0.0001 (5) | −0.29053 (11) | 0.7108 (2) | 0.0813 (8) | |
| H3A | −0.0749 | −0.3255 | 0.6630 | 0.098* | |
| C4 | 0.1924 (5) | −0.26197 (12) | 0.7021 (2) | 0.0785 (7) | |
| H4A | 0.2477 | −0.2776 | 0.6482 | 0.094* | |
| C5 | 0.3063 (4) | −0.20992 (11) | 0.77261 (18) | 0.0595 (5) | |
| H5A | 0.4375 | −0.1905 | 0.7666 | 0.071* | |
| C6 | 0.2208 (3) | −0.18732 (8) | 0.85247 (14) | 0.0421 (3) | |
| C7 | −0.0086 (3) | −0.04191 (8) | 0.84341 (13) | 0.0376 (3) | |
| H7A | −0.0340 | −0.0501 | 0.9135 | 0.045* | |
| H7B | −0.1126 | −0.0704 | 0.7824 | 0.045* | |
| C8 | −0.0652 (3) | 0.02844 (8) | 0.80650 (14) | 0.0406 (3) | |
| H8A | −0.2328 | 0.0367 | 0.7862 | 0.049* | |
| H8B | 0.0271 | 0.0567 | 0.8708 | 0.049* | |
| C9 | 0.2364 (3) | 0.02842 (9) | 0.72652 (16) | 0.0472 (4) | |
| H9A | 0.3431 | 0.0565 | 0.7873 | 0.057* | |
| H9B | 0.2594 | 0.0367 | 0.6558 | 0.057* | |
| C10 | 0.2931 (3) | −0.04207 (9) | 0.76225 (14) | 0.0423 (3) | |
| H10A | 0.1969 | −0.0703 | 0.6987 | 0.051* | |
| H10B | 0.4597 | −0.0508 | 0.7804 | 0.051* | |
| C11 | −0.1625 (3) | 0.06530 (8) | 0.60275 (14) | 0.0436 (4) | |
| C12 | −0.5669 (4) | 0.09306 (12) | 0.48616 (18) | 0.0637 (5) | |
| H12A | −0.5300 | 0.0763 | 0.4233 | 0.076* | |
| H12C | −0.7206 | 0.0759 | 0.4769 | 0.076* | |
| C13 | −0.5775 (7) | 0.16308 (16) | 0.4804 (3) | 0.1174 (13) | |
| H13A | −0.6971 | 0.1763 | 0.4064 | 0.176* | |
| H13B | −0.4254 | 0.1799 | 0.4891 | 0.176* | |
| H13C | −0.6170 | 0.1795 | 0.5418 | 0.176* |
| S1 | 0.0397 (2) | 0.0421 (2) | 0.0286 (2) | 0.00210 (13) | 0.00853 (15) | 0.00111 (13) |
| O1 | 0.0710 (9) | 0.0526 (7) | 0.0297 (6) | 0.0009 (6) | 0.0187 (6) | 0.0025 (5) |
| O2 | 0.0368 (6) | 0.0628 (8) | 0.0521 (8) | 0.0056 (5) | 0.0053 (5) | 0.0070 (6) |
| O3 | 0.0668 (9) | 0.0926 (11) | 0.0443 (7) | 0.0176 (8) | 0.0288 (6) | 0.0217 (7) |
| O4 | 0.0449 (7) | 0.0863 (10) | 0.0481 (7) | 0.0147 (6) | 0.0167 (6) | 0.0204 (7) |
| N1 | 0.0342 (6) | 0.0394 (6) | 0.0305 (6) | 0.0018 (5) | 0.0136 (5) | 0.0023 (5) |
| N2 | 0.0382 (6) | 0.0502 (7) | 0.0376 (6) | 0.0057 (5) | 0.0179 (5) | 0.0107 (6) |
| C1 | 0.0568 (10) | 0.0465 (9) | 0.0550 (10) | −0.0022 (8) | 0.0178 (8) | 0.0017 (8) |
| C2 | 0.0690 (14) | 0.0462 (11) | 0.0853 (17) | −0.0098 (9) | 0.0065 (12) | 0.0024 (11) |
| C3 | 0.0979 (19) | 0.0399 (10) | 0.0691 (15) | 0.0061 (11) | −0.0039 (13) | −0.0143 (10) |
| C4 | 0.1010 (19) | 0.0625 (14) | 0.0608 (13) | 0.0193 (13) | 0.0213 (13) | −0.0212 (11) |
| C5 | 0.0699 (12) | 0.0580 (11) | 0.0521 (10) | 0.0106 (9) | 0.0262 (9) | −0.0092 (9) |
| C6 | 0.0470 (8) | 0.0366 (8) | 0.0374 (7) | 0.0065 (6) | 0.0119 (6) | 0.0000 (6) |
| C7 | 0.0366 (7) | 0.0439 (8) | 0.0364 (7) | 0.0003 (6) | 0.0192 (6) | 0.0037 (6) |
| C8 | 0.0435 (7) | 0.0449 (8) | 0.0373 (7) | 0.0074 (6) | 0.0205 (6) | 0.0040 (6) |
| C9 | 0.0376 (7) | 0.0587 (10) | 0.0494 (9) | 0.0020 (7) | 0.0220 (7) | 0.0164 (8) |
| C10 | 0.0380 (7) | 0.0556 (9) | 0.0386 (8) | 0.0075 (6) | 0.0210 (6) | 0.0076 (7) |
| C11 | 0.0455 (8) | 0.0477 (9) | 0.0375 (8) | 0.0038 (6) | 0.0169 (6) | 0.0053 (6) |
| C12 | 0.0510 (10) | 0.0811 (15) | 0.0494 (10) | 0.0032 (10) | 0.0104 (8) | 0.0043 (10) |
| C13 | 0.131 (3) | 0.077 (2) | 0.101 (2) | 0.0254 (18) | 0.003 (2) | 0.0136 (17) |
| S1—O1 | 1.4312 (13) | C4—H4A | 0.9300 |
| S1—O2 | 1.4320 (14) | C5—C6 | 1.389 (2) |
| S1—N1 | 1.6365 (13) | C5—H5A | 0.9300 |
| S1—C6 | 1.7634 (17) | C7—C8 | 1.518 (2) |
| O3—C11 | 1.210 (2) | C7—H7A | 0.9700 |
| O4—C11 | 1.346 (2) | C7—H7B | 0.9700 |
| O4—C12 | 1.465 (2) | C8—H8A | 0.9700 |
| N1—C10 | 1.4745 (18) | C8—H8B | 0.9700 |
| N1—C7 | 1.4755 (18) | C9—C10 | 1.518 (2) |
| N2—C11 | 1.347 (2) | C9—H9A | 0.9700 |
| N2—C8 | 1.4554 (19) | C9—H9B | 0.9700 |
| N2—C9 | 1.455 (2) | C10—H10A | 0.9700 |
| C1—C6 | 1.387 (3) | C10—H10B | 0.9700 |
| C1—C2 | 1.391 (3) | C12—C13 | 1.444 (4) |
| C1—H1A | 0.9300 | C12—H12A | 0.9700 |
| C2—C3 | 1.377 (4) | C12—H12C | 0.9700 |
| C2—H2A | 0.9300 | C13—H13A | 0.9600 |
| C3—C4 | 1.365 (4) | C13—H13B | 0.9600 |
| C3—H3A | 0.9300 | C13—H13C | 0.9600 |
| C4—C5 | 1.385 (3) | ||
| O1—S1—O2 | 119.62 (9) | C8—C7—H7B | 109.9 |
| O1—S1—N1 | 107.02 (7) | H7A—C7—H7B | 108.3 |
| O2—S1—N1 | 106.60 (7) | N2—C8—C7 | 110.26 (12) |
| O1—S1—C6 | 107.94 (8) | N2—C8—H8A | 109.6 |
| O2—S1—C6 | 108.04 (8) | C7—C8—H8A | 109.6 |
| N1—S1—C6 | 107.00 (7) | N2—C8—H8B | 109.6 |
| C11—O4—C12 | 115.91 (15) | C7—C8—H8B | 109.6 |
| C10—N1—C7 | 112.47 (11) | H8A—C8—H8B | 108.1 |
| C10—N1—S1 | 116.33 (10) | N2—C9—C10 | 109.69 (13) |
| C7—N1—S1 | 116.73 (10) | N2—C9—H9A | 109.7 |
| C11—N2—C8 | 126.01 (13) | C10—C9—H9A | 109.7 |
| C11—N2—C9 | 120.02 (13) | N2—C9—H9B | 109.7 |
| C8—N2—C9 | 113.96 (12) | C10—C9—H9B | 109.7 |
| C6—C1—C2 | 118.1 (2) | H9A—C9—H9B | 108.2 |
| C6—C1—H1A | 121.0 | N1—C10—C9 | 108.96 (13) |
| C2—C1—H1A | 121.0 | N1—C10—H10A | 109.9 |
| C3—C2—C1 | 120.9 (2) | C9—C10—H10A | 109.9 |
| C3—C2—H2A | 119.6 | N1—C10—H10B | 109.9 |
| C1—C2—H2A | 119.6 | C9—C10—H10B | 109.9 |
| C4—C3—C2 | 120.2 (2) | H10A—C10—H10B | 108.3 |
| C4—C3—H3A | 119.9 | O3—C11—O4 | 123.90 (15) |
| C2—C3—H3A | 119.9 | O3—C11—N2 | 124.31 (16) |
| C3—C4—C5 | 120.7 (2) | O4—C11—N2 | 111.78 (14) |
| C3—C4—H4A | 119.6 | C13—C12—O4 | 110.2 (2) |
| C5—C4—H4A | 119.6 | C13—C12—H12A | 109.6 |
| C4—C5—C6 | 118.7 (2) | O4—C12—H12A | 109.6 |
| C4—C5—H5A | 120.7 | C13—C12—H12C | 109.6 |
| C6—C5—H5A | 120.7 | O4—C12—H12C | 109.6 |
| C1—C6—C5 | 121.44 (18) | H12A—C12—H12C | 108.1 |
| C1—C6—S1 | 119.99 (14) | C12—C13—H13A | 109.5 |
| C5—C6—S1 | 118.55 (15) | C12—C13—H13B | 109.5 |
| N1—C7—C8 | 108.73 (12) | H13A—C13—H13B | 109.5 |
| N1—C7—H7A | 109.9 | C12—C13—H13C | 109.5 |
| C8—C7—H7A | 109.9 | H13A—C13—H13C | 109.5 |
| N1—C7—H7B | 109.9 | H13B—C13—H13C | 109.5 |
| O1—S1—N1—C10 | 175.82 (11) | N1—S1—C6—C5 | 85.65 (15) |
| O2—S1—N1—C10 | 46.71 (13) | C10—N1—C7—C8 | −58.52 (17) |
| C6—S1—N1—C10 | −68.69 (13) | S1—N1—C7—C8 | 163.26 (10) |
| O1—S1—N1—C7 | −47.57 (12) | C11—N2—C8—C7 | 122.68 (18) |
| O2—S1—N1—C7 | −176.67 (11) | C9—N2—C8—C7 | −56.43 (18) |
| C6—S1—N1—C7 | 67.92 (12) | N1—C7—C8—N2 | 55.05 (16) |
| C6—C1—C2—C3 | −0.5 (3) | C11—N2—C9—C10 | −122.59 (17) |
| C1—C2—C3—C4 | 0.2 (4) | C8—N2—C9—C10 | 56.58 (19) |
| C2—C3—C4—C5 | 0.0 (4) | C7—N1—C10—C9 | 59.10 (17) |
| C3—C4—C5—C6 | 0.0 (3) | S1—N1—C10—C9 | −162.49 (11) |
| C2—C1—C6—C5 | 0.5 (3) | N2—C9—C10—N1 | −55.79 (18) |
| C2—C1—C6—S1 | 179.12 (15) | C12—O4—C11—O3 | 2.6 (3) |
| C4—C5—C6—C1 | −0.3 (3) | C12—O4—C11—N2 | −176.51 (17) |
| C4—C5—C6—S1 | −178.91 (16) | C8—N2—C11—O3 | 178.53 (18) |
| O1—S1—C6—C1 | 21.89 (16) | C9—N2—C11—O3 | −2.4 (3) |
| O2—S1—C6—C1 | 152.57 (14) | C8—N2—C11—O4 | −2.4 (2) |
| N1—S1—C6—C1 | −92.99 (15) | C9—N2—C11—O4 | 176.66 (15) |
| O1—S1—C6—C5 | −159.47 (14) | C11—O4—C12—C13 | −88.6 (3) |
| O2—S1—C6—C5 | −28.79 (17) |
| Cg1 is the centroid of the C1–C6 ring. |
| H··· | ||||
| C13—H13A···Cg1i | 0.96 | 2.97 | 3.900 (4) | 165 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
| H⋯ | ||||
|---|---|---|---|---|
| C13—H13 | 0.96 | 2.97 | 3.900 (4) | 165 |
Symmetry code: (i) .