| Literature DB >> 22058991 |
Tao Lu, Mu-Wu Xu, Xiao-Jian Liao, Shi-Hai Xu.
Abstract
In the title compound C(13)H(27)N(2)O(3) (+)·Cl(-)·H(2)O, obtained by deprotecting the amino and carboxyl groups of an inter-mediate in the synthesis of the cyclic penta-peptide Galaxamide, a number of hydrogen-bonding inter-actions occur including aminium N-H⋯Cl, amide-carboxyl N-H⋯O, water O-H⋯Cl and carbox-yl-water O-H⋯O associations. The aminium N-H⋯Cl⋯H-N bridging extensions give rise to zigzag chains extending along the a axis, the overall two-dimensional structure lying in the (110) plane.Entities:
Year: 2011 PMID: 22058991 PMCID: PMC3200702 DOI: 10.1107/S1600536811031126
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H27N2O3+·Cl−·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 1351 reflections | |
| θ = 3.1–29.1° | |
| µ = 0.22 mm−1 | |
| β = 96.329 (4)° | |
| Block, colourless | |
| 0.45 × 0.32 × 0.17 mm |
| Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer | 2616 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2271 reflections with |
| graphite | |
| Detector resolution: 16.0288 pixels mm-1 | θmax = 26.0°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 3703 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2616 reflections | Δρmax = 0.37 e Å−3 |
| 186 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 686 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.01 (8) |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.9159 (3) | 0.8611 (2) | 0.21026 (11) | 0.0456 (7) | |
| O2 | 1.1446 (4) | 1.1632 (3) | 0.27116 (12) | 0.0647 (9) | |
| O3 | 0.8114 (4) | 1.1739 (3) | 0.18571 (12) | 0.0609 (8) | |
| N1 | 0.5270 (4) | 0.7595 (3) | 0.09916 (12) | 0.0467 (8) | |
| N2 | 0.5803 (4) | 0.9650 (3) | 0.25512 (13) | 0.0422 (8) | |
| C1 | 0.4995 (5) | 0.7609 (3) | 0.17896 (15) | 0.0407 (9) | |
| C2 | 0.6837 (5) | 0.8673 (3) | 0.21552 (14) | 0.0376 (8) | |
| C3 | 0.7383 (5) | 1.0686 (3) | 0.29656 (15) | 0.0429 (9) | |
| C4 | 0.9252 (5) | 1.1384 (3) | 0.24936 (15) | 0.0451 (9) | |
| C5 | 0.5595 (5) | 0.6146 (4) | 0.20897 (15) | 0.0460 (8) | |
| C6 | 0.8781 (6) | 1.0087 (4) | 0.36714 (16) | 0.0538 (10) | |
| C7 | 0.5536 (5) | 0.5991 (4) | 0.29136 (15) | 0.0477 (9) | |
| C8 | 0.7036 (7) | 0.9642 (5) | 0.42373 (18) | 0.0648 (13) | |
| C9 | 0.6292 (8) | 0.4502 (4) | 0.3139 (2) | 0.0718 (14) | |
| C10 | 0.2924 (7) | 0.6351 (6) | 0.3153 (2) | 0.0761 (14) | |
| C11 | 0.8619 (12) | 0.8836 (9) | 0.4839 (3) | 0.124 (3) | |
| C12 | 0.5709 (8) | 1.0854 (7) | 0.4543 (2) | 0.0883 (19) | |
| C13 | 0.4878 (8) | 0.8963 (5) | 0.06236 (19) | 0.0701 (14) | |
| O4 | 1.0969 (8) | 1.2934 (4) | 0.09741 (19) | 0.1200 (16) | |
| Cl1 | 0.01614 (13) | 0.60884 (9) | 0.04716 (4) | 0.0580 (3) | |
| H1 | 0.32240 | 0.78610 | 0.18640 | 0.0490* | |
| H1A | 0.68570 | 0.72850 | 0.09280 | 0.0560* | |
| H1B | 0.41260 | 0.69860 | 0.07710 | 0.0560* | |
| H2 | 0.41610 | 0.96640 | 0.25610 | 0.0510* | |
| H3 | 0.62160 | 1.14120 | 0.31070 | 0.0520* | |
| H3A | 0.90570 | 1.21190 | 0.15680 | 0.0730* | |
| H5A | 0.43590 | 0.55010 | 0.18430 | 0.0550* | |
| H5B | 0.72900 | 0.58780 | 0.19700 | 0.0550* | |
| H6A | 0.97830 | 0.92880 | 0.35480 | 0.0640* | |
| H6B | 0.99780 | 1.07820 | 0.38890 | 0.0640* | |
| H7 | 0.68190 | 0.66260 | 0.31610 | 0.0570* | |
| H8 | 0.57160 | 0.90170 | 0.40000 | 0.0780* | |
| H9A | 0.50160 | 0.38660 | 0.29190 | 0.1070* | |
| H9B | 0.64010 | 0.44200 | 0.36620 | 0.1070* | |
| H9C | 0.79340 | 0.42830 | 0.29790 | 0.1070* | |
| H10A | 0.24780 | 0.72890 | 0.30110 | 0.1140* | |
| H10B | 0.29980 | 0.62660 | 0.36750 | 0.1140* | |
| H10C | 0.16460 | 0.57240 | 0.29260 | 0.1140* | |
| H11A | 0.94290 | 0.80570 | 0.46310 | 0.1850* | |
| H11B | 0.75120 | 0.85070 | 0.51860 | 0.1850* | |
| H11C | 0.99160 | 0.94350 | 0.50820 | 0.1850* | |
| H12A | 0.69730 | 1.14720 | 0.47860 | 0.1330* | |
| H12B | 0.45900 | 1.05260 | 0.48870 | 0.1330* | |
| H12C | 0.47140 | 1.13420 | 0.41540 | 0.1330* | |
| H13A | 0.50050 | 0.88560 | 0.01100 | 0.1050* | |
| H13B | 0.61720 | 0.96040 | 0.08280 | 0.1050* | |
| H13C | 0.32020 | 0.93160 | 0.06940 | 0.1050* | |
| H4A | 1.14740 | 1.23240 | 0.06880 | 0.1440* | |
| H4B | 1.01050 | 1.35560 | 0.07270 | 0.1440* |
| O1 | 0.0316 (9) | 0.0457 (13) | 0.0607 (12) | 0.0060 (9) | 0.0102 (8) | −0.0027 (11) |
| O2 | 0.0421 (11) | 0.0755 (19) | 0.0769 (14) | −0.0069 (12) | 0.0078 (10) | 0.0094 (14) |
| O3 | 0.0645 (13) | 0.0608 (16) | 0.0567 (12) | −0.0036 (13) | 0.0038 (11) | 0.0162 (12) |
| N1 | 0.0420 (12) | 0.0530 (17) | 0.0443 (13) | −0.0020 (12) | 0.0011 (10) | 0.0028 (12) |
| N2 | 0.0325 (11) | 0.0422 (15) | 0.0526 (13) | 0.0089 (11) | 0.0075 (10) | 0.0002 (12) |
| C1 | 0.0340 (12) | 0.0426 (17) | 0.0462 (15) | 0.0045 (13) | 0.0077 (11) | 0.0011 (14) |
| C2 | 0.0342 (12) | 0.0355 (16) | 0.0434 (14) | 0.0058 (13) | 0.0059 (11) | 0.0057 (13) |
| C3 | 0.0397 (13) | 0.0399 (18) | 0.0499 (15) | 0.0089 (13) | 0.0081 (12) | −0.0017 (13) |
| C4 | 0.0446 (15) | 0.0358 (18) | 0.0555 (16) | 0.0064 (14) | 0.0083 (13) | 0.0016 (14) |
| C5 | 0.0427 (13) | 0.0393 (16) | 0.0551 (15) | −0.0006 (15) | 0.0019 (11) | 0.0009 (16) |
| C6 | 0.0487 (16) | 0.062 (2) | 0.0497 (17) | 0.0062 (16) | 0.0009 (13) | 0.0009 (16) |
| C7 | 0.0475 (14) | 0.0412 (17) | 0.0535 (15) | 0.0020 (16) | 0.0022 (12) | 0.0052 (16) |
| C8 | 0.073 (2) | 0.071 (3) | 0.0502 (17) | −0.022 (2) | 0.0056 (16) | 0.0017 (18) |
| C9 | 0.076 (2) | 0.050 (2) | 0.088 (3) | 0.004 (2) | 0.003 (2) | 0.018 (2) |
| C10 | 0.0628 (19) | 0.092 (3) | 0.077 (2) | 0.008 (2) | 0.0236 (17) | 0.025 (3) |
| C11 | 0.151 (5) | 0.144 (6) | 0.077 (3) | 0.009 (5) | 0.018 (3) | 0.054 (4) |
| C12 | 0.079 (2) | 0.130 (5) | 0.060 (2) | −0.009 (3) | 0.0255 (18) | −0.015 (3) |
| C13 | 0.078 (2) | 0.071 (3) | 0.059 (2) | −0.003 (2) | −0.0021 (18) | 0.018 (2) |
| O4 | 0.165 (3) | 0.099 (3) | 0.099 (2) | −0.003 (3) | 0.028 (2) | 0.015 (2) |
| Cl1 | 0.0507 (4) | 0.0606 (5) | 0.0630 (4) | −0.0075 (4) | 0.0081 (3) | −0.0114 (5) |
| O1—C2 | 1.228 (3) | C1—H1 | 0.9800 |
| O2—C4 | 1.195 (3) | C3—H3 | 0.9800 |
| O3—C4 | 1.300 (4) | C5—H5B | 0.9700 |
| O3—H3A | 0.8500 | C5—H5A | 0.9700 |
| O4—H4B | 0.8500 | C6—H6A | 0.9700 |
| O4—H4A | 0.8500 | C6—H6B | 0.9700 |
| N1—C13 | 1.482 (5) | C7—H7 | 0.9800 |
| N1—C1 | 1.492 (4) | C8—H8 | 0.9800 |
| N2—C2 | 1.338 (4) | C9—H9C | 0.9600 |
| N2—C3 | 1.454 (4) | C9—H9B | 0.9600 |
| N1—H1A | 0.9000 | C9—H9A | 0.9600 |
| N1—H1B | 0.9000 | C10—H10B | 0.9600 |
| N2—H2 | 0.8600 | C10—H10A | 0.9600 |
| C1—C5 | 1.529 (5) | C10—H10C | 0.9600 |
| C1—C2 | 1.510 (4) | C11—H11B | 0.9600 |
| C3—C4 | 1.531 (4) | C11—H11A | 0.9600 |
| C3—C6 | 1.531 (4) | C11—H11C | 0.9600 |
| C5—C7 | 1.528 (4) | C12—H12B | 0.9600 |
| C6—C8 | 1.519 (5) | C12—H12C | 0.9600 |
| C7—C10 | 1.519 (5) | C12—H12A | 0.9600 |
| C7—C9 | 1.529 (5) | C13—H13C | 0.9600 |
| C8—C12 | 1.496 (7) | C13—H13A | 0.9600 |
| C8—C11 | 1.519 (8) | C13—H13B | 0.9600 |
| C4—O3—H3A | 116.00 | C3—C6—H6B | 108.00 |
| H4A—O4—H4B | 110.00 | C8—C6—H6A | 109.00 |
| C1—N1—C13 | 114.8 (3) | C3—C6—H6A | 109.00 |
| C2—N2—C3 | 121.7 (2) | H6A—C6—H6B | 108.00 |
| C1—N1—H1B | 109.00 | C8—C6—H6B | 109.00 |
| C13—N1—H1A | 108.00 | C5—C7—H7 | 108.00 |
| H1A—N1—H1B | 108.00 | C9—C7—H7 | 108.00 |
| C1—N1—H1A | 109.00 | C10—C7—H7 | 108.00 |
| C13—N1—H1B | 109.00 | C6—C8—H8 | 108.00 |
| C2—N2—H2 | 119.00 | C11—C8—H8 | 108.00 |
| C3—N2—H2 | 119.00 | C12—C8—H8 | 108.00 |
| N1—C1—C2 | 108.6 (2) | C7—C9—H9B | 109.00 |
| N1—C1—C5 | 108.0 (2) | C7—C9—H9C | 110.00 |
| C2—C1—C5 | 111.5 (2) | H9A—C9—H9B | 109.00 |
| O1—C2—C1 | 121.2 (2) | H9A—C9—H9C | 109.00 |
| N2—C2—C1 | 116.2 (2) | H9B—C9—H9C | 109.00 |
| O1—C2—N2 | 122.6 (3) | C7—C9—H9A | 110.00 |
| N2—C3—C6 | 112.2 (3) | C7—C10—H10A | 109.00 |
| C4—C3—C6 | 111.9 (2) | C7—C10—H10B | 109.00 |
| N2—C3—C4 | 111.2 (2) | H10A—C10—H10B | 110.00 |
| O2—C4—C3 | 123.0 (3) | H10A—C10—H10C | 110.00 |
| O3—C4—C3 | 111.7 (2) | H10B—C10—H10C | 109.00 |
| O2—C4—O3 | 125.2 (3) | C7—C10—H10C | 110.00 |
| C1—C5—C7 | 115.0 (3) | C8—C11—H11B | 109.00 |
| C3—C6—C8 | 115.0 (3) | C8—C11—H11C | 109.00 |
| C5—C7—C10 | 112.5 (2) | C8—C11—H11A | 110.00 |
| C9—C7—C10 | 110.3 (3) | H11A—C11—H11C | 109.00 |
| C5—C7—C9 | 109.1 (3) | H11B—C11—H11C | 109.00 |
| C6—C8—C12 | 112.1 (4) | H11A—C11—H11B | 109.00 |
| C11—C8—C12 | 111.1 (4) | C8—C12—H12A | 109.00 |
| C6—C8—C11 | 108.9 (3) | C8—C12—H12B | 109.00 |
| C2—C1—H1 | 110.00 | H12A—C12—H12B | 109.00 |
| C5—C1—H1 | 110.00 | H12A—C12—H12C | 109.00 |
| N1—C1—H1 | 110.00 | C8—C12—H12C | 110.00 |
| C4—C3—H3 | 107.00 | H12B—C12—H12C | 109.00 |
| C6—C3—H3 | 107.00 | N1—C13—H13B | 109.00 |
| N2—C3—H3 | 107.00 | N1—C13—H13C | 109.00 |
| C1—C5—H5B | 109.00 | N1—C13—H13A | 110.00 |
| C7—C5—H5A | 108.00 | H13A—C13—H13C | 109.00 |
| C7—C5—H5B | 109.00 | H13B—C13—H13C | 109.00 |
| H5A—C5—H5B | 107.00 | H13A—C13—H13B | 109.00 |
| C1—C5—H5A | 109.00 | ||
| C13—N1—C1—C2 | −56.0 (3) | C2—C1—C5—C7 | 57.8 (3) |
| C13—N1—C1—C5 | −177.1 (2) | N2—C3—C4—O2 | −138.2 (3) |
| C3—N2—C2—O1 | −1.8 (4) | N2—C3—C4—O3 | 45.8 (3) |
| C3—N2—C2—C1 | 176.3 (2) | C6—C3—C4—O2 | −11.8 (4) |
| C2—N2—C3—C4 | 49.6 (3) | C6—C3—C4—O3 | 172.1 (3) |
| C2—N2—C3—C6 | −76.5 (3) | N2—C3—C6—C8 | −66.0 (4) |
| N1—C1—C2—O1 | −56.6 (3) | C4—C3—C6—C8 | 168.1 (3) |
| N1—C1—C2—N2 | 125.2 (3) | C1—C5—C7—C9 | −177.4 (3) |
| C5—C1—C2—O1 | 62.3 (3) | C1—C5—C7—C10 | 59.8 (4) |
| C5—C1—C2—N2 | −115.9 (3) | C3—C6—C8—C11 | 169.8 (4) |
| N1—C1—C5—C7 | 177.1 (2) | C3—C6—C8—C12 | −66.9 (4) |
| H··· | ||||
| N1—H1A···Cl1i | 0.90 | 2.31 | 3.174 (2) | 161 |
| N1—H1B···Cl1 | 0.90 | 2.25 | 3.092 (2) | 155 |
| N2—H2···O2ii | 0.86 | 2.40 | 3.006 (3) | 128 |
| O3—H3A···O4 | 0.85 | 1.74 | 2.591 (5) | 179 |
| O4—H4A···Cl1iii | 0.85 | 2.51 | 3.198 (4) | 139 |
| O4—H4B···Cl1iv | 0.85 | 2.48 | 3.182 (4) | 141 |
| C1—H1···O1ii | 0.98 | 2.33 | 3.306 (3) | 175 |
| C3—H3···O2ii | 0.98 | 2.53 | 3.215 (3) | 127 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.90 | 2.31 | 3.174 (2) | 161 |
| N1—H1 | 0.90 | 2.25 | 3.092 (2) | 155 |
| N2—H2⋯O2ii | 0.86 | 2.40 | 3.006 (3) | 128 |
| O3—H3 | 0.85 | 1.74 | 2.591 (5) | 179 |
| O4—H4 | 0.85 | 2.51 | 3.198 (4) | 139 |
| O4—H4 | 0.85 | 2.48 | 3.182 (4) | 141 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .