Literature DB >> 22058987

8-Phenyl-3,4,6,7,8,8a-hexahydro-1H-pyrrolo-[2,1-c][1,4]oxazin-6-one.

Magdalena Małecka, Beata Pasternak, Stanisław Leśniak.   

Abstract

In the title compound, C(13)H(15)NO(2), the hexa-hydro-pyrrolo-[2,1-c][1,4]oxazine fragment is disordered over two conformations (A and B) in a 0.656 (5):0.344 (5) ratio. The five-membered ring is similarly disordered and adopts an envelope conformation in A, while in B this ring is nearly planar [maximum deviation = 0.088 (1) Å]. The six-membered rings in both A and B exhibit chair conformations. In the crystal, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into ribbons propagating in [010].

Entities:  

Year:  2011        PMID: 22058987      PMCID: PMC3200730          DOI: 10.1107/S1600536811032806

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Leśniak et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the biological properties of similar structures, see: Nicolaou et al. (2002 ▶). For related structures, see: Chaume et al. (2008 ▶); Dorsey et al. (2003 ▶); Harwood et al. (1997 ▶).

Experimental

Crystal data

C13H15NO2 M = 217.27 Monoclinic, a = 13.2737 (12) Å b = 7.1066 (4) Å c = 11.9233 (10) Å β = 103.917 (7)° V = 1091.72 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.36 × 0.21 × 0.03 mm

Data collection

Stoe IPDS 2 diffractometer 6960 measured reflections 2301 independent reflections 1200 reflections with I > 2σ(I) R int = 0.108

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.109 S = 0.81 2301 reflections 196 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2000 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811032806/cv5138sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032806/cv5138Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811032806/cv5138Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NO2F(000) = 464
Mr = 217.27Dx = 1.322 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2762 reflections
a = 13.2737 (12) Åθ = 1.6–27.1°
b = 7.1066 (4) ŵ = 0.09 mm1
c = 11.9233 (10) ÅT = 100 K
β = 103.917 (7)°Plate, colourless
V = 1091.72 (15) Å30.36 × 0.21 × 0.03 mm
Z = 4
Stoe IPDS 2 diffractometer1200 reflections with I > 2σ(I)
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focusRint = 0.108
planar graphiteθmax = 26.8°, θmin = 1.6°
Detector resolution: 6.67 pixels mm-1h = −16→16
rotation method scansk = −8→8
6960 measured reflectionsl = −14→15
2301 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0509P)2] where P = (Fo2 + 2Fc2)/3
S = 0.81(Δ/σ)max < 0.001
2301 reflectionsΔρmax = 0.21 e Å3
196 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.047 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C6A0.6366 (3)0.7343 (6)0.8977 (3)0.0425 (9)0.656 (5)
H6A0.63410.82210.83480.051*0.656 (5)
H6B0.57990.76240.93330.051*0.656 (5)
C6B0.6801 (6)0.6628 (11)0.8736 (5)0.0464 (18)0.344 (5)
H6C0.71830.55610.85430.056*0.344 (5)
H6D0.67090.75410.81150.056*0.344 (5)
C5A0.7290 (3)0.6480 (5)1.0830 (3)0.0409 (9)0.656 (5)
H5A0.66570.68141.10540.049*0.656 (5)
H5B0.78780.67621.14660.049*0.656 (5)
C5B0.7692 (5)0.5623 (12)1.0597 (6)0.0437 (17)0.344 (5)
H5C0.79800.46841.01720.052*0.344 (5)
H5D0.82040.59221.13040.052*0.344 (5)
C7A0.6287 (3)0.5338 (5)0.8537 (3)0.0410 (9)0.656 (5)
H7A0.56120.51280.80190.049*0.656 (5)
H7B0.68140.51100.81120.049*0.656 (5)
C7B0.5784 (6)0.6015 (11)0.8900 (6)0.051 (2)0.344 (5)
H7C0.54280.70670.91520.061*0.344 (5)
H7D0.53560.55450.81780.061*0.344 (5)
N1A0.6434 (2)0.4075 (4)0.9511 (2)0.0353 (7)0.656 (5)
N1B0.5961 (5)0.4532 (9)0.9771 (5)0.0411 (15)0.344 (5)
C4A0.7283 (3)0.4418 (5)1.0511 (2)0.0364 (9)0.656 (5)
H4A0.79480.40421.03600.044*0.656 (5)
C4B0.6714 (5)0.4927 (9)1.0858 (5)0.0407 (18)0.344 (5)
H4B0.64400.58171.13390.049*0.344 (5)
O10.52984 (10)0.1832 (2)0.86955 (11)0.0594 (5)
O20.73644 (10)0.7476 (2)0.98285 (11)0.0568 (4)
C360.81951 (14)0.3636 (3)1.33444 (16)0.0453 (5)
H360.77450.45761.34640.054*
C20.64430 (14)0.1486 (3)1.06256 (15)0.0448 (5)
H2B0.69540.05921.04910.054*
H2A0.59350.08201.09400.054*
C320.86314 (15)0.1182 (3)1.22000 (16)0.0459 (5)
H320.84760.04451.15360.055*
C350.91025 (14)0.3310 (3)1.41661 (16)0.0514 (6)
H350.92590.40341.48350.062*
C330.95397 (15)0.0859 (3)1.30222 (18)0.0516 (6)
H330.9991−0.00831.29080.062*
C340.97791 (15)0.1928 (3)1.40096 (17)0.0523 (6)
H341.03920.17191.45660.063*
C30.69621 (18)0.3034 (3)1.14461 (17)0.0513 (6)
C310.79475 (13)0.2572 (3)1.23386 (14)0.0408 (5)
C10.59269 (15)0.2476 (3)0.95258 (16)0.0505 (5)
H70.6478 (17)0.348 (4)1.1835 (19)0.074 (8)*
U11U22U33U12U13U23
C6A0.0416 (19)0.041 (2)0.0405 (18)0.0053 (17)0.0014 (14)0.0030 (16)
C6B0.060 (5)0.038 (4)0.039 (4)0.002 (4)0.008 (3)−0.004 (3)
C5A0.0446 (19)0.043 (2)0.0316 (16)0.0039 (16)0.0017 (14)0.0012 (15)
C5B0.040 (4)0.040 (5)0.046 (4)−0.001 (3)0.002 (3)0.002 (3)
C7A0.0405 (18)0.047 (2)0.0323 (17)0.0032 (16)0.0021 (13)0.0030 (16)
C7B0.052 (4)0.061 (5)0.033 (3)0.003 (4)−0.004 (3)0.009 (3)
N1A0.0368 (15)0.0380 (16)0.0278 (14)0.0003 (12)0.0012 (12)0.0004 (11)
N1B0.041 (3)0.051 (4)0.027 (3)−0.006 (3)0.000 (2)0.004 (2)
C4A0.0326 (17)0.041 (2)0.0320 (16)0.0001 (15)0.0012 (13)−0.0001 (14)
C4B0.039 (4)0.046 (4)0.034 (3)−0.001 (3)0.003 (3)−0.003 (3)
O10.0560 (8)0.0739 (11)0.0405 (8)−0.0204 (8)−0.0034 (7)−0.0059 (7)
O20.0596 (8)0.0651 (10)0.0396 (8)−0.0191 (7)0.0001 (6)0.0087 (7)
C360.0479 (10)0.0486 (12)0.0393 (11)−0.0088 (9)0.0103 (8)−0.0029 (9)
C20.0427 (10)0.0501 (12)0.0392 (11)−0.0101 (9)0.0052 (8)−0.0007 (9)
C320.0566 (12)0.0460 (13)0.0338 (10)−0.0097 (9)0.0082 (9)−0.0034 (9)
C350.0500 (12)0.0702 (16)0.0325 (11)−0.0172 (11)0.0070 (9)−0.0101 (10)
C330.0476 (11)0.0527 (14)0.0522 (13)−0.0031 (9)0.0073 (10)0.0005 (11)
C340.0449 (11)0.0690 (16)0.0389 (11)−0.0107 (11)0.0019 (9)0.0050 (11)
C30.0674 (14)0.0440 (13)0.0347 (11)−0.0032 (10)−0.0031 (10)0.0024 (10)
C310.0493 (10)0.0421 (11)0.0287 (10)−0.0098 (9)0.0050 (8)0.0019 (9)
C10.0506 (11)0.0627 (15)0.0345 (11)−0.0167 (10)0.0027 (9)0.0008 (10)
C6A—O21.466 (3)N1B—C4B1.461 (7)
C6A—C7A1.513 (6)N1B—C11.489 (7)
C6A—H6A0.9700C4A—C31.618 (4)
C6A—H6B0.9700C4A—H4A0.9800
C6B—O21.466 (7)C4B—C31.516 (6)
C6B—C7B1.476 (12)C4B—H4B0.9800
C6B—H6C0.9700O1—C11.220 (2)
C6B—H6D0.9700C36—C351.377 (2)
C5A—O21.411 (3)C36—C311.389 (3)
C5A—C4A1.513 (5)C36—H360.9300
C5A—H5A0.9700C2—C11.500 (3)
C5A—H5B0.9700C2—C31.522 (3)
C5B—C4B1.491 (10)C2—H2B0.9700
C5B—O21.603 (7)C2—H2A0.9700
C5B—H5C0.9700C32—C331.378 (3)
C5B—H5D0.9700C32—C311.378 (3)
C7A—N1A1.444 (4)C32—H320.9300
C7A—H7A0.9700C35—C341.373 (3)
C7A—H7B0.9700C35—H350.9300
C7B—N1B1.459 (8)C33—C341.373 (3)
C7B—H7C0.9700C33—H330.9300
C7B—H7D0.9700C34—H340.9300
N1A—C11.324 (3)C3—C311.511 (3)
N1A—C4A1.450 (4)C3—H70.93 (2)
O2—C6A—C7A106.0 (3)C5B—C4B—C3106.7 (6)
O2—C6A—H6A110.5N1B—C4B—H4B111.9
C7A—C6A—H6A110.5C5B—C4B—H4B111.9
O2—C6A—H6B110.5C3—C4B—H4B111.9
C7A—C6A—H6B110.5C5A—O2—C6B114.9 (3)
H6A—C6A—H6B108.7C5A—O2—C6A108.5 (2)
O2—C6B—C7B106.9 (6)C6B—O2—C6A34.4 (3)
O2—C6B—H6C110.3C5A—O2—C5B33.9 (3)
C7B—C6B—H6C110.3C6B—O2—C5B100.4 (4)
O2—C6B—H6D110.3C6A—O2—C5B114.8 (3)
C7B—C6B—H6D110.3C35—C36—C31120.5 (2)
H6C—C6B—H6D108.6C35—C36—H36119.8
O2—C5A—C4A105.7 (3)C31—C36—H36119.7
O2—C5A—H5A110.6C1—C2—C3105.31 (17)
C4A—C5A—H5A110.6C1—C2—H2B110.7
O2—C5A—H5B110.6C3—C2—H2B110.7
C4A—C5A—H5B110.6C1—C2—H2A110.7
H5A—C5A—H5B108.7C3—C2—H2A110.7
C4B—C5B—O2105.2 (5)H2B—C2—H2A108.8
C4B—C5B—H5C110.7C33—C32—C31121.53 (18)
O2—C5B—H5C110.7C33—C32—H32119.2
C4B—C5B—H5D110.7C31—C32—H32119.2
O2—C5B—H5D110.7C34—C35—C36120.81 (19)
H5C—C5B—H5D108.8C34—C35—H35119.6
N1A—C7A—C6A108.7 (3)C36—C35—H35119.6
N1A—C7A—H7A109.9C34—C33—C32120.0 (2)
C6A—C7A—H7A109.9C34—C33—H33120.0
N1A—C7A—H7B109.9C32—C33—H33120.0
C6A—C7A—H7B109.9C33—C34—C35119.22 (18)
H7A—C7A—H7B108.3C33—C34—H34120.4
N1B—C7B—C6B108.1 (5)C35—C34—H34120.4
N1B—C7B—H7C110.1C31—C3—C4B125.0 (3)
C6B—C7B—H7C110.1C31—C3—C2118.49 (18)
N1B—C7B—H7D110.1C4B—C3—C2109.2 (2)
C6B—C7B—H7D110.1C31—C3—C4A106.91 (19)
H7C—C7B—H7D108.4C4B—C3—C4A37.5 (2)
C1—N1A—C7A125.0 (2)C2—C3—C4A98.62 (18)
C1—N1A—C4A115.5 (2)C31—C3—H7107.8 (14)
C7A—N1A—C4A119.0 (3)C4B—C3—H780.2 (16)
C7B—N1B—C4B116.9 (5)C2—C3—H7107.7 (15)
C7B—N1B—C1125.3 (5)C4A—C3—H7117.6 (16)
C4B—N1B—C1110.2 (4)C32—C31—C36117.90 (17)
N1A—C4A—C5A109.0 (2)C32—C31—C3123.72 (17)
N1A—C4A—C3100.6 (2)C36—C31—C3118.36 (19)
C5A—C4A—C3113.8 (3)O1—C1—N1A124.2 (2)
N1A—C4A—H4A111.0O1—C1—N1B120.7 (3)
C5A—C4A—H4A111.0N1A—C1—N1B33.7 (2)
C3—C4A—H4A111.0O1—C1—C2127.8 (2)
N1B—C4B—C5B108.8 (5)N1A—C1—C2106.68 (17)
N1B—C4B—C3105.4 (4)N1B—C1—C2107.6 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2B···O2i0.972.463.329 (3)149
C7A—H7A···O1ii0.972.433.154 (4)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2B⋯O2i0.972.463.329 (3)149
C7A—H7A⋯O1ii0.972.433.154 (4)131

Symmetry codes: (i) ; (ii) .

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