Literature DB >> 22058975

1-Phenyl-5-{[2-(trimethyl-sil-yl)eth-yl]sulfon-yl}-1H-tetra-zole.

David Tymann1, Björn Nelson, Carsten Strohmann, Hans Preut, Martin Hiersemann.   

Abstract

The title compound, C(12)H(18)N(4)O(2)SSi, was synthen class="Chemical">sized to be employed in a Julia-Kocieński olefination. In the mol-ecule, the dihedral angle between the phenyl ring and the tetra-zole ring is 41.50 (5)°. The significantly longer Si-C(methyl-ene) bond [1.8786 (13) Å] and the shortened adjacent C-C bond [1.5172 (18) Å], as well as the significant deviation of the corresponding Si-C-C angle [114.16 (9)°] from the ideal tetra-hedral angle, can be attributed to the β-effect of silicon. In the crystal, mol-ecules are held together by van der Waals inter-actions.

Entities:  

Year:  2011        PMID: 22058975      PMCID: PMC3200698          DOI: 10.1107/S1600536811030492

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Julia–Kocieński olefination, see: Blakemore et al. (1998 ▶). For the use of unsaturated α-keto esters in intra­molecular carbonyl-ene reactions in natural product synthen class="Chemical">sis, see: Helmboldt & Hiersemann (2009 ▶); Helmboldt et al. (2006 ▶); Schnabel & Hiersemann (2009 ▶); Schnabel et al. (2011 ▶) The title compound was synthesized using a reduction of ethyl 2-(trimethyl­sil­yl)acetate (Gerlach, 1977 ▶) followed by a Mitsunobu reaction (Mitsunobu & Yamada, 1967 ▶; Mitsunobu et al., 1967 ▶) and a subsequent Mo-(VI)-catalyzed oxidation of the thio­ether (Schultz et al., 1963 ▶).

Experimental

Crystal data

C12H18N4O2SSi M = 310.45 Monoclinic, a = 11.3126 (4) Å b = 13.2707 (4) Å c = 10.8277 (4) Å β = 106.902 (4)° V = 1555.31 (9) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.50 × 0.50 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.868, T max = 0.944 22841 measured reflections 3384 independent reflections 2961 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.079 S = 1.10 3384 reflections 184 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis n class="Disease">CCD; data reduction: CrysAlis CCD; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030492/hg5066sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030492/hg5066Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030492/hg5066Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H18N4O2SSiF(000) = 656
Mr = 310.45Dx = 1.326 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 16653 reflections
a = 11.3126 (4) Åθ = 2.4–29.2°
b = 13.2707 (4) ŵ = 0.29 mm1
c = 10.8277 (4) ÅT = 173 K
β = 106.902 (4)°Block, colourless
V = 1555.31 (9) Å30.50 × 0.50 × 0.20 mm
Z = 4
Oxford Diffraction Xcalibur S CCD diffractometer3384 independent reflections
Radiation source: Enhance (Mo) X-ray Source2961 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 16.0560 pixels mm-1θmax = 27.0°, θmin = 2.4°
ω scansh = −14→14
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −16→16
Tmin = 0.868, Tmax = 0.944l = −13→13
22841 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0465P)2 + 0.3668P] where P = (Fo2 + 2Fc2)/3
3384 reflections(Δ/σ)max = 0.001
184 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.37 e Å3
Experimental. CrysAlis RED, Oxford Diffraction Ltd., Version 1.171.32.37 (release 24-10-2008) Empirical absorption correction using sperical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si0.47993 (3)0.79710 (3)1.25192 (3)0.01949 (10)
C10.47042 (15)0.87175 (12)1.39384 (14)0.0341 (3)
H1A0.39330.85571.41350.051*
H1B0.47220.94381.37440.051*
H1C0.54080.85521.46840.051*
C20.61720 (14)0.83876 (13)1.20403 (15)0.0346 (3)
H2A0.69230.82471.27430.052*
H2B0.61140.91131.18620.052*
H2C0.62030.80221.12630.052*
C30.48654 (13)0.66005 (11)1.28620 (15)0.0310 (3)
H3A0.48950.62281.20900.046*
H3B0.41300.63991.31050.046*
H3C0.56070.64501.35730.046*
C40.33521 (12)0.81809 (10)1.11572 (13)0.0255 (3)
H4A0.34180.78021.03930.031*
H4B0.26430.79031.14070.031*
C50.30914 (11)0.92782 (10)1.07831 (12)0.0206 (3)
H5A0.37970.95731.05410.025*
H5B0.29770.96641.15230.025*
S0.17351 (3)0.93484 (2)0.94605 (3)0.01563 (9)
O10.19901 (9)0.90232 (7)0.83074 (9)0.0253 (2)
O20.07296 (8)0.89053 (7)0.98167 (9)0.0222 (2)
C60.14770 (11)1.06672 (9)0.93227 (12)0.0162 (2)
N10.20780 (10)1.12950 (8)1.02188 (10)0.0209 (2)
N20.16789 (11)1.22251 (8)0.97617 (11)0.0253 (3)
N30.08670 (11)1.21661 (8)0.86430 (11)0.0233 (2)
N40.07262 (9)1.11767 (8)0.83393 (10)0.0172 (2)
C10−0.01458 (11)1.08607 (10)0.71540 (12)0.0187 (3)
C11−0.02014 (13)1.14131 (11)0.60586 (13)0.0254 (3)
H110.03181.19820.60960.030*
C12−0.10312 (14)1.11189 (12)0.49061 (13)0.0320 (3)
H12−0.10851.14850.41380.038*
C13−0.17799 (14)1.02960 (12)0.48703 (14)0.0331 (3)
H13−0.23491.00980.40750.040*
C14−0.17131 (13)0.97537 (11)0.59818 (14)0.0295 (3)
H14−0.22350.91870.59450.035*
C15−0.08875 (12)1.00359 (10)0.71465 (13)0.0223 (3)
H15−0.08340.96720.79160.027*
U11U22U33U12U13U23
Si0.01680 (18)0.01994 (18)0.02019 (18)0.00148 (13)0.00294 (13)0.00318 (13)
C10.0433 (9)0.0335 (8)0.0261 (7)0.0030 (7)0.0110 (6)0.0011 (6)
C20.0267 (7)0.0423 (9)0.0372 (8)−0.0053 (7)0.0130 (6)−0.0001 (7)
C30.0248 (7)0.0253 (7)0.0384 (8)0.0043 (6)0.0022 (6)0.0080 (6)
C40.0224 (6)0.0195 (6)0.0288 (7)0.0011 (5)−0.0019 (5)0.0030 (5)
C50.0172 (6)0.0206 (6)0.0198 (6)0.0009 (5)−0.0012 (5)0.0015 (5)
S0.01427 (15)0.01592 (15)0.01611 (15)0.00142 (11)0.00350 (11)0.00039 (10)
O10.0287 (5)0.0278 (5)0.0199 (5)0.0066 (4)0.0081 (4)−0.0022 (4)
O20.0181 (4)0.0204 (5)0.0283 (5)−0.0012 (4)0.0069 (4)0.0039 (4)
C60.0142 (5)0.0170 (6)0.0184 (6)0.0009 (4)0.0064 (4)0.0012 (4)
N10.0185 (5)0.0195 (5)0.0242 (5)−0.0010 (4)0.0055 (4)−0.0021 (4)
N20.0255 (6)0.0192 (6)0.0300 (6)−0.0004 (4)0.0064 (5)−0.0022 (5)
N30.0266 (6)0.0157 (5)0.0278 (6)−0.0007 (4)0.0081 (5)−0.0010 (4)
N40.0188 (5)0.0152 (5)0.0182 (5)0.0011 (4)0.0064 (4)0.0017 (4)
C100.0176 (6)0.0202 (6)0.0174 (6)0.0052 (5)0.0039 (5)−0.0006 (5)
C110.0289 (7)0.0250 (7)0.0233 (6)0.0073 (6)0.0092 (5)0.0056 (5)
C120.0391 (8)0.0355 (8)0.0196 (7)0.0160 (7)0.0058 (6)0.0050 (6)
C130.0326 (8)0.0369 (8)0.0223 (7)0.0143 (7)−0.0040 (6)−0.0076 (6)
C140.0250 (7)0.0250 (7)0.0331 (8)0.0032 (6)−0.0004 (6)−0.0061 (6)
C150.0218 (6)0.0212 (6)0.0224 (6)0.0034 (5)0.0039 (5)0.0008 (5)
Si—C31.8534 (15)S—O21.4295 (9)
Si—C11.8575 (15)S—C61.7734 (13)
Si—C21.8586 (15)C6—N11.3093 (16)
Si—C41.8786 (13)C6—N41.3366 (15)
C1—H1A0.9800N1—N21.3573 (16)
C1—H1B0.9800N2—N31.2924 (16)
C1—H1C0.9800N3—N41.3517 (15)
C2—H2A0.9800N4—C101.4353 (15)
C2—H2B0.9800C10—C151.3778 (19)
C2—H2C0.9800C10—C111.3802 (18)
C3—H3A0.9800C11—C121.382 (2)
C3—H3B0.9800C11—H110.9500
C3—H3C0.9800C12—C131.376 (2)
C4—C51.5172 (18)C12—H120.9500
C4—H4A0.9900C13—C141.385 (2)
C4—H4B0.9900C13—H130.9500
C5—S1.7710 (12)C14—C151.3850 (18)
C5—H5A0.9900C14—H140.9500
C5—H5B0.9900C15—H150.9500
S—O11.4275 (9)
C3—Si—C1111.49 (7)H5A—C5—H5B108.3
C3—Si—C2111.06 (7)O1—S—O2119.38 (6)
C1—Si—C2109.04 (8)O1—S—C5110.09 (6)
C3—Si—C4106.14 (6)O2—S—C5109.30 (6)
C1—Si—C4108.88 (7)O1—S—C6107.15 (6)
C2—Si—C4110.18 (7)O2—S—C6107.71 (6)
Si—C1—H1A109.5C5—S—C6101.69 (6)
Si—C1—H1B109.5N1—C6—N4109.95 (11)
H1A—C1—H1B109.5N1—C6—S121.89 (9)
Si—C1—H1C109.5N4—C6—S128.11 (9)
H1A—C1—H1C109.5C6—N1—N2105.22 (10)
H1B—C1—H1C109.5N3—N2—N1110.92 (10)
Si—C2—H2A109.5N2—N3—N4106.75 (10)
Si—C2—H2B109.5C6—N4—N3107.16 (10)
H2A—C2—H2B109.5C6—N4—C10132.60 (11)
Si—C2—H2C109.5N3—N4—C10120.20 (10)
H2A—C2—H2C109.5C15—C10—C11122.78 (12)
H2B—C2—H2C109.5C15—C10—N4119.77 (11)
Si—C3—H3A109.5C11—C10—N4117.45 (12)
Si—C3—H3B109.5C10—C11—C12118.37 (14)
H3A—C3—H3B109.5C10—C11—H11120.8
Si—C3—H3C109.5C12—C11—H11120.8
H3A—C3—H3C109.5C13—C12—C11120.05 (13)
H3B—C3—H3C109.5C13—C12—H12120.0
C5—C4—Si114.16 (9)C11—C12—H12120.0
C5—C4—H4A108.7C12—C13—C14120.69 (13)
Si—C4—H4A108.7C12—C13—H13119.7
C5—C4—H4B108.7C14—C13—H13119.7
Si—C4—H4B108.7C15—C14—C13120.17 (14)
H4A—C4—H4B107.6C15—C14—H14119.9
C4—C5—S108.77 (9)C13—C14—H14119.9
C4—C5—H5A109.9C10—C15—C14117.94 (13)
S—C5—H5A109.9C10—C15—H15121.0
C4—C5—H5B109.9C14—C15—H15121.0
S—C5—H5B109.9
C3—Si—C4—C5176.60 (11)S—C6—N4—N3−177.75 (9)
C1—Si—C4—C556.46 (12)N1—C6—N4—C10−177.91 (11)
C2—Si—C4—C5−63.07 (13)S—C6—N4—C104.50 (19)
Si—C4—C5—S178.07 (7)N2—N3—N4—C60.40 (14)
C4—C5—S—O1−74.32 (11)N2—N3—N4—C10178.48 (10)
C4—C5—S—O258.65 (11)C6—N4—C10—C1540.14 (19)
C4—C5—S—C6172.32 (9)N3—N4—C10—C15−137.36 (12)
O1—S—C6—N1−127.27 (10)C6—N4—C10—C11−140.07 (13)
O2—S—C6—N1103.12 (11)N3—N4—C10—C1142.42 (16)
C5—S—C6—N1−11.74 (12)C15—C10—C11—C12−0.5 (2)
O1—S—C6—N450.06 (12)N4—C10—C11—C12179.73 (12)
O2—S—C6—N4−79.55 (12)C10—C11—C12—C130.3 (2)
C5—S—C6—N4165.59 (11)C11—C12—C13—C140.0 (2)
N4—C6—N1—N2−0.12 (13)C12—C13—C14—C150.0 (2)
S—C6—N1—N2177.64 (9)C11—C10—C15—C140.5 (2)
C6—N1—N2—N30.38 (14)N4—C10—C15—C14−179.75 (11)
N1—N2—N3—N4−0.49 (14)C13—C14—C15—C10−0.2 (2)
N1—C6—N4—N3−0.17 (14)
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