| Literature DB >> 22058975 |
David Tymann1, Björn Nelson, Carsten Strohmann, Hans Preut, Martin Hiersemann.
Abstract
The title compound, C(12)H(18)N(4)O(2)SSi, was syntheEntities:
Year: 2011 PMID: 22058975 PMCID: PMC3200698 DOI: 10.1107/S1600536811030492
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H18N4O2SSi | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 16653 reflections |
| θ = 2.4–29.2° | |
| µ = 0.29 mm−1 | |
| β = 106.902 (4)° | Block, colourless |
| 0.50 × 0.50 × 0.20 mm | |
| Oxford Diffraction Xcalibur S CCD diffractometer | 3384 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2961 reflections with |
| graphite | |
| Detector resolution: 16.0560 pixels mm-1 | θmax = 27.0°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 22841 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3384 reflections | (Δ/σ)max = 0.001 |
| 184 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.37 e Å−3 |
| Experimental. CrysAlis RED, Oxford Diffraction Ltd., Version 1.171.32.37 (release 24-10-2008) Empirical absorption correction using sperical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Si | 0.47993 (3) | 0.79710 (3) | 1.25192 (3) | 0.01949 (10) | |
| C1 | 0.47042 (15) | 0.87175 (12) | 1.39384 (14) | 0.0341 (3) | |
| H1A | 0.3933 | 0.8557 | 1.4135 | 0.051* | |
| H1B | 0.4722 | 0.9438 | 1.3744 | 0.051* | |
| H1C | 0.5408 | 0.8552 | 1.4684 | 0.051* | |
| C2 | 0.61720 (14) | 0.83876 (13) | 1.20403 (15) | 0.0346 (3) | |
| H2A | 0.6923 | 0.8247 | 1.2743 | 0.052* | |
| H2B | 0.6114 | 0.9113 | 1.1862 | 0.052* | |
| H2C | 0.6203 | 0.8022 | 1.1263 | 0.052* | |
| C3 | 0.48654 (13) | 0.66005 (11) | 1.28620 (15) | 0.0310 (3) | |
| H3A | 0.4895 | 0.6228 | 1.2090 | 0.046* | |
| H3B | 0.4130 | 0.6399 | 1.3105 | 0.046* | |
| H3C | 0.5607 | 0.6450 | 1.3573 | 0.046* | |
| C4 | 0.33521 (12) | 0.81809 (10) | 1.11572 (13) | 0.0255 (3) | |
| H4A | 0.3418 | 0.7802 | 1.0393 | 0.031* | |
| H4B | 0.2643 | 0.7903 | 1.1407 | 0.031* | |
| C5 | 0.30914 (11) | 0.92782 (10) | 1.07831 (12) | 0.0206 (3) | |
| H5A | 0.3797 | 0.9573 | 1.0541 | 0.025* | |
| H5B | 0.2977 | 0.9664 | 1.1523 | 0.025* | |
| S | 0.17351 (3) | 0.93484 (2) | 0.94605 (3) | 0.01563 (9) | |
| O1 | 0.19901 (9) | 0.90232 (7) | 0.83074 (9) | 0.0253 (2) | |
| O2 | 0.07296 (8) | 0.89053 (7) | 0.98167 (9) | 0.0222 (2) | |
| C6 | 0.14770 (11) | 1.06672 (9) | 0.93227 (12) | 0.0162 (2) | |
| N1 | 0.20780 (10) | 1.12950 (8) | 1.02188 (10) | 0.0209 (2) | |
| N2 | 0.16789 (11) | 1.22251 (8) | 0.97617 (11) | 0.0253 (3) | |
| N3 | 0.08670 (11) | 1.21661 (8) | 0.86430 (11) | 0.0233 (2) | |
| N4 | 0.07262 (9) | 1.11767 (8) | 0.83393 (10) | 0.0172 (2) | |
| C10 | −0.01458 (11) | 1.08607 (10) | 0.71540 (12) | 0.0187 (3) | |
| C11 | −0.02014 (13) | 1.14131 (11) | 0.60586 (13) | 0.0254 (3) | |
| H11 | 0.0318 | 1.1982 | 0.6096 | 0.030* | |
| C12 | −0.10312 (14) | 1.11189 (12) | 0.49061 (13) | 0.0320 (3) | |
| H12 | −0.1085 | 1.1485 | 0.4138 | 0.038* | |
| C13 | −0.17799 (14) | 1.02960 (12) | 0.48703 (14) | 0.0331 (3) | |
| H13 | −0.2349 | 1.0098 | 0.4075 | 0.040* | |
| C14 | −0.17131 (13) | 0.97537 (11) | 0.59818 (14) | 0.0295 (3) | |
| H14 | −0.2235 | 0.9187 | 0.5945 | 0.035* | |
| C15 | −0.08875 (12) | 1.00359 (10) | 0.71465 (13) | 0.0223 (3) | |
| H15 | −0.0834 | 0.9672 | 0.7916 | 0.027* |
| Si | 0.01680 (18) | 0.01994 (18) | 0.02019 (18) | 0.00148 (13) | 0.00294 (13) | 0.00318 (13) |
| C1 | 0.0433 (9) | 0.0335 (8) | 0.0261 (7) | 0.0030 (7) | 0.0110 (6) | 0.0011 (6) |
| C2 | 0.0267 (7) | 0.0423 (9) | 0.0372 (8) | −0.0053 (7) | 0.0130 (6) | −0.0001 (7) |
| C3 | 0.0248 (7) | 0.0253 (7) | 0.0384 (8) | 0.0043 (6) | 0.0022 (6) | 0.0080 (6) |
| C4 | 0.0224 (6) | 0.0195 (6) | 0.0288 (7) | 0.0011 (5) | −0.0019 (5) | 0.0030 (5) |
| C5 | 0.0172 (6) | 0.0206 (6) | 0.0198 (6) | 0.0009 (5) | −0.0012 (5) | 0.0015 (5) |
| S | 0.01427 (15) | 0.01592 (15) | 0.01611 (15) | 0.00142 (11) | 0.00350 (11) | 0.00039 (10) |
| O1 | 0.0287 (5) | 0.0278 (5) | 0.0199 (5) | 0.0066 (4) | 0.0081 (4) | −0.0022 (4) |
| O2 | 0.0181 (4) | 0.0204 (5) | 0.0283 (5) | −0.0012 (4) | 0.0069 (4) | 0.0039 (4) |
| C6 | 0.0142 (5) | 0.0170 (6) | 0.0184 (6) | 0.0009 (4) | 0.0064 (4) | 0.0012 (4) |
| N1 | 0.0185 (5) | 0.0195 (5) | 0.0242 (5) | −0.0010 (4) | 0.0055 (4) | −0.0021 (4) |
| N2 | 0.0255 (6) | 0.0192 (6) | 0.0300 (6) | −0.0004 (4) | 0.0064 (5) | −0.0022 (5) |
| N3 | 0.0266 (6) | 0.0157 (5) | 0.0278 (6) | −0.0007 (4) | 0.0081 (5) | −0.0010 (4) |
| N4 | 0.0188 (5) | 0.0152 (5) | 0.0182 (5) | 0.0011 (4) | 0.0064 (4) | 0.0017 (4) |
| C10 | 0.0176 (6) | 0.0202 (6) | 0.0174 (6) | 0.0052 (5) | 0.0039 (5) | −0.0006 (5) |
| C11 | 0.0289 (7) | 0.0250 (7) | 0.0233 (6) | 0.0073 (6) | 0.0092 (5) | 0.0056 (5) |
| C12 | 0.0391 (8) | 0.0355 (8) | 0.0196 (7) | 0.0160 (7) | 0.0058 (6) | 0.0050 (6) |
| C13 | 0.0326 (8) | 0.0369 (8) | 0.0223 (7) | 0.0143 (7) | −0.0040 (6) | −0.0076 (6) |
| C14 | 0.0250 (7) | 0.0250 (7) | 0.0331 (8) | 0.0032 (6) | −0.0004 (6) | −0.0061 (6) |
| C15 | 0.0218 (6) | 0.0212 (6) | 0.0224 (6) | 0.0034 (5) | 0.0039 (5) | 0.0008 (5) |
| Si—C3 | 1.8534 (15) | S—O2 | 1.4295 (9) |
| Si—C1 | 1.8575 (15) | S—C6 | 1.7734 (13) |
| Si—C2 | 1.8586 (15) | C6—N1 | 1.3093 (16) |
| Si—C4 | 1.8786 (13) | C6—N4 | 1.3366 (15) |
| C1—H1A | 0.9800 | N1—N2 | 1.3573 (16) |
| C1—H1B | 0.9800 | N2—N3 | 1.2924 (16) |
| C1—H1C | 0.9800 | N3—N4 | 1.3517 (15) |
| C2—H2A | 0.9800 | N4—C10 | 1.4353 (15) |
| C2—H2B | 0.9800 | C10—C15 | 1.3778 (19) |
| C2—H2C | 0.9800 | C10—C11 | 1.3802 (18) |
| C3—H3A | 0.9800 | C11—C12 | 1.382 (2) |
| C3—H3B | 0.9800 | C11—H11 | 0.9500 |
| C3—H3C | 0.9800 | C12—C13 | 1.376 (2) |
| C4—C5 | 1.5172 (18) | C12—H12 | 0.9500 |
| C4—H4A | 0.9900 | C13—C14 | 1.385 (2) |
| C4—H4B | 0.9900 | C13—H13 | 0.9500 |
| C5—S | 1.7710 (12) | C14—C15 | 1.3850 (18) |
| C5—H5A | 0.9900 | C14—H14 | 0.9500 |
| C5—H5B | 0.9900 | C15—H15 | 0.9500 |
| S—O1 | 1.4275 (9) | ||
| C3—Si—C1 | 111.49 (7) | H5A—C5—H5B | 108.3 |
| C3—Si—C2 | 111.06 (7) | O1—S—O2 | 119.38 (6) |
| C1—Si—C2 | 109.04 (8) | O1—S—C5 | 110.09 (6) |
| C3—Si—C4 | 106.14 (6) | O2—S—C5 | 109.30 (6) |
| C1—Si—C4 | 108.88 (7) | O1—S—C6 | 107.15 (6) |
| C2—Si—C4 | 110.18 (7) | O2—S—C6 | 107.71 (6) |
| Si—C1—H1A | 109.5 | C5—S—C6 | 101.69 (6) |
| Si—C1—H1B | 109.5 | N1—C6—N4 | 109.95 (11) |
| H1A—C1—H1B | 109.5 | N1—C6—S | 121.89 (9) |
| Si—C1—H1C | 109.5 | N4—C6—S | 128.11 (9) |
| H1A—C1—H1C | 109.5 | C6—N1—N2 | 105.22 (10) |
| H1B—C1—H1C | 109.5 | N3—N2—N1 | 110.92 (10) |
| Si—C2—H2A | 109.5 | N2—N3—N4 | 106.75 (10) |
| Si—C2—H2B | 109.5 | C6—N4—N3 | 107.16 (10) |
| H2A—C2—H2B | 109.5 | C6—N4—C10 | 132.60 (11) |
| Si—C2—H2C | 109.5 | N3—N4—C10 | 120.20 (10) |
| H2A—C2—H2C | 109.5 | C15—C10—C11 | 122.78 (12) |
| H2B—C2—H2C | 109.5 | C15—C10—N4 | 119.77 (11) |
| Si—C3—H3A | 109.5 | C11—C10—N4 | 117.45 (12) |
| Si—C3—H3B | 109.5 | C10—C11—C12 | 118.37 (14) |
| H3A—C3—H3B | 109.5 | C10—C11—H11 | 120.8 |
| Si—C3—H3C | 109.5 | C12—C11—H11 | 120.8 |
| H3A—C3—H3C | 109.5 | C13—C12—C11 | 120.05 (13) |
| H3B—C3—H3C | 109.5 | C13—C12—H12 | 120.0 |
| C5—C4—Si | 114.16 (9) | C11—C12—H12 | 120.0 |
| C5—C4—H4A | 108.7 | C12—C13—C14 | 120.69 (13) |
| Si—C4—H4A | 108.7 | C12—C13—H13 | 119.7 |
| C5—C4—H4B | 108.7 | C14—C13—H13 | 119.7 |
| Si—C4—H4B | 108.7 | C15—C14—C13 | 120.17 (14) |
| H4A—C4—H4B | 107.6 | C15—C14—H14 | 119.9 |
| C4—C5—S | 108.77 (9) | C13—C14—H14 | 119.9 |
| C4—C5—H5A | 109.9 | C10—C15—C14 | 117.94 (13) |
| S—C5—H5A | 109.9 | C10—C15—H15 | 121.0 |
| C4—C5—H5B | 109.9 | C14—C15—H15 | 121.0 |
| S—C5—H5B | 109.9 | ||
| C3—Si—C4—C5 | 176.60 (11) | S—C6—N4—N3 | −177.75 (9) |
| C1—Si—C4—C5 | 56.46 (12) | N1—C6—N4—C10 | −177.91 (11) |
| C2—Si—C4—C5 | −63.07 (13) | S—C6—N4—C10 | 4.50 (19) |
| Si—C4—C5—S | 178.07 (7) | N2—N3—N4—C6 | 0.40 (14) |
| C4—C5—S—O1 | −74.32 (11) | N2—N3—N4—C10 | 178.48 (10) |
| C4—C5—S—O2 | 58.65 (11) | C6—N4—C10—C15 | 40.14 (19) |
| C4—C5—S—C6 | 172.32 (9) | N3—N4—C10—C15 | −137.36 (12) |
| O1—S—C6—N1 | −127.27 (10) | C6—N4—C10—C11 | −140.07 (13) |
| O2—S—C6—N1 | 103.12 (11) | N3—N4—C10—C11 | 42.42 (16) |
| C5—S—C6—N1 | −11.74 (12) | C15—C10—C11—C12 | −0.5 (2) |
| O1—S—C6—N4 | 50.06 (12) | N4—C10—C11—C12 | 179.73 (12) |
| O2—S—C6—N4 | −79.55 (12) | C10—C11—C12—C13 | 0.3 (2) |
| C5—S—C6—N4 | 165.59 (11) | C11—C12—C13—C14 | 0.0 (2) |
| N4—C6—N1—N2 | −0.12 (13) | C12—C13—C14—C15 | 0.0 (2) |
| S—C6—N1—N2 | 177.64 (9) | C11—C10—C15—C14 | 0.5 (2) |
| C6—N1—N2—N3 | 0.38 (14) | N4—C10—C15—C14 | −179.75 (11) |
| N1—N2—N3—N4 | −0.49 (14) | C13—C14—C15—C10 | −0.2 (2) |
| N1—C6—N4—N3 | −0.17 (14) |