Literature DB >> 22058969

(1E,4E)-1,5-Bis(thio-phen-3-yl)penta-1,4-dien-3-one.

S Shalini, C R Girija, Mukesh M Jotani, B Rajashekhar, Nageswar Rao, Edward R T Tiekink.   

Abstract

The title compound, C(13)H(10)OS(2), exhibits twists between the central C(3)O and ethene residues [O-C-C-C torsion angles = -8.4 (3) and 11.8 (3)°], and between the ethene and adjacent thio-phenyl residues [C-C-C-C torsion angles = -4.2 (3) and 10.5 (3)°]. As a result, the mol-ecule is non-planar, the dihedral angle formed between the terminal thio-phenyl groups being 15.45 (10)°. The presence of C-H⋯O inter-actions involving the bifurcated carbonyl O atom leads to supra-molecular arrays in the ac plane. These are linked into a three-dimensional architecture by C-H⋯π inter-actions involving both thio-phenyl residues.

Entities:  

Year:  2011        PMID: 22058969      PMCID: PMC3200598          DOI: 10.1107/S160053681103248X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of chalcones in organic synthesis, see: Nehad et al. (2007 ▶); Xu et al. (2001 ▶). For the biological activity of chalcones, see: Lambert et al. (2009 ▶); Boumendjel et al. (2008 ▶). Semi-empirical quantum chemical calculations were performed using MOPAC2009, see: Stewart (2009 ▶).

Experimental

Crystal data

C13H10OS2 M = 246.33 Orthorhombic, a = 11.8908 (3) Å b = 7.1807 (1) Å c = 28.3004 (6) Å V = 2416.41 (9) Å3 Z = 8 Mo Kα radiation μ = 0.42 mm−1 T = 293 K 0.40 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer 39245 measured reflections 2760 independent reflections 2187 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.121 S = 1.09 2760 reflections 145 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103248X/hg5079sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103248X/hg5079Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681103248X/hg5079Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10OS2F(000) = 1024
Mr = 246.33Dx = 1.354 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 50 reflections
a = 11.8908 (3) Åθ = 5.0–30.0°
b = 7.1807 (1) ŵ = 0.42 mm1
c = 28.3004 (6) ÅT = 293 K
V = 2416.41 (9) Å3Needle, colorless
Z = 80.40 × 0.20 × 0.10 mm
Bruker SMART APEX CCD diffractometer2187 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
graphiteθmax = 27.5°, θmin = 1.4°
ω and φ scansh = −15→15
39245 measured reflectionsk = −8→9
2760 independent reflectionsl = −36→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0528P)2 + 0.9807P] where P = (Fo2 + 2Fc2)/3
2760 reflections(Δ/σ)max = 0.002
145 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.38360 (5)0.12409 (9)0.833684 (17)0.0655 (2)
S20.38292 (5)−0.15855 (9)0.398067 (18)0.0658 (2)
O10.17784 (11)0.0181 (2)0.61498 (4)0.0581 (4)
C30.35238 (14)0.0577 (2)0.74599 (6)0.0422 (4)
C50.29957 (15)0.0511 (2)0.69974 (6)0.0441 (4)
H50.22940.10720.69710.053*
C80.33643 (16)−0.0925 (3)0.57374 (6)0.0476 (4)
H80.4061−0.15000.57700.057*
C20.45551 (15)−0.0286 (3)0.75867 (6)0.0516 (4)
H20.5002−0.09440.73750.062*
C100.34646 (15)−0.1238 (2)0.48658 (6)0.0462 (4)
C60.34072 (15)−0.0264 (3)0.66085 (6)0.0467 (4)
H60.4121−0.07940.66170.056*
C110.30593 (18)−0.0723 (3)0.44352 (7)0.0569 (5)
H110.24270.00240.43950.068*
C90.29452 (16)−0.0692 (3)0.53080 (6)0.0472 (4)
H90.2246−0.01180.52880.057*
C40.30471 (17)0.1448 (3)0.78394 (6)0.0518 (4)
H40.23660.20840.78270.062*
C70.27673 (15)−0.0308 (2)0.61635 (6)0.0447 (4)
C10.48190 (17)−0.0050 (3)0.80489 (7)0.0616 (5)
H10.5460−0.05360.81910.074*
C130.44370 (16)−0.2385 (3)0.48152 (7)0.0550 (5)
H130.4836−0.28730.50690.066*
C120.47191 (17)−0.2690 (3)0.43574 (8)0.0616 (5)
H120.5326−0.34150.42610.074*
U11U22U33U12U13U23
S10.0834 (4)0.0759 (4)0.0373 (3)−0.0050 (3)−0.0023 (2)0.0014 (2)
S20.0802 (4)0.0740 (4)0.0433 (3)0.0006 (3)0.0076 (2)−0.0057 (2)
O10.0456 (7)0.0847 (10)0.0442 (7)0.0005 (7)−0.0025 (5)−0.0016 (7)
C30.0453 (9)0.0400 (8)0.0411 (8)−0.0032 (7)−0.0018 (7)0.0029 (7)
C50.0441 (9)0.0442 (9)0.0440 (9)−0.0013 (7)−0.0045 (7)0.0027 (7)
C80.0482 (10)0.0500 (9)0.0447 (9)−0.0014 (8)−0.0005 (8)−0.0020 (8)
C20.0456 (10)0.0615 (11)0.0476 (10)0.0033 (8)−0.0019 (8)0.0032 (8)
C100.0496 (10)0.0457 (9)0.0432 (9)−0.0017 (8)−0.0014 (7)−0.0031 (7)
C60.0463 (9)0.0509 (10)0.0428 (9)−0.0003 (8)−0.0030 (7)0.0022 (7)
C110.0659 (12)0.0604 (11)0.0445 (10)0.0106 (10)−0.0001 (9)−0.0047 (8)
C90.0485 (9)0.0485 (9)0.0447 (9)0.0013 (8)0.0004 (7)−0.0025 (7)
C40.0583 (11)0.0530 (10)0.0441 (9)0.0040 (9)−0.0001 (8)0.0026 (8)
C70.0455 (10)0.0478 (9)0.0408 (9)−0.0068 (8)−0.0012 (7)0.0023 (7)
C10.0542 (11)0.0799 (14)0.0507 (11)−0.0015 (10)−0.0095 (9)0.0139 (10)
C130.0482 (10)0.0634 (12)0.0535 (11)0.0015 (9)−0.0024 (8)−0.0028 (9)
C120.0508 (11)0.0693 (13)0.0648 (12)0.0012 (10)0.0094 (9)−0.0111 (10)
S1—C41.6982 (19)C2—H20.9300
S1—C11.700 (2)C10—C111.362 (3)
S2—C111.6960 (19)C10—C131.427 (3)
S2—C121.699 (2)C10—C91.450 (2)
O1—C71.228 (2)C6—C71.472 (2)
C3—C41.366 (2)C6—H60.9300
C3—C21.420 (2)C11—H110.9300
C3—C51.452 (2)C9—H90.9300
C5—C61.327 (2)C4—H40.9300
C5—H50.9300C1—H10.9300
C8—C91.324 (2)C13—C121.356 (3)
C8—C71.468 (2)C13—H130.9300
C8—H80.9300C12—H120.9300
C2—C11.356 (3)
C4—S1—C191.73 (9)C10—C11—H11123.6
C11—S2—C1291.76 (10)S2—C11—H11123.6
C4—C3—C2111.06 (16)C8—C9—C10126.70 (17)
C4—C3—C5122.97 (16)C8—C9—H9116.7
C2—C3—C5125.93 (16)C10—C9—H9116.7
C6—C5—C3127.01 (17)C3—C4—S1112.49 (15)
C6—C5—H5116.5C3—C4—H4123.8
C3—C5—H5116.5S1—C4—H4123.8
C9—C8—C7122.26 (17)O1—C7—C8121.58 (16)
C9—C8—H8118.9O1—C7—C6121.05 (16)
C7—C8—H8118.9C8—C7—C6117.36 (16)
C1—C2—C3112.91 (18)C2—C1—S1111.80 (15)
C1—C2—H2123.5C2—C1—H1124.1
C3—C2—H2123.5S1—C1—H1124.1
C11—C10—C13110.73 (17)C12—C13—C10112.92 (18)
C11—C10—C9123.24 (17)C12—C13—H13123.5
C13—C10—C9126.03 (17)C10—C13—H13123.5
C5—C6—C7121.90 (17)C13—C12—S2111.74 (16)
C5—C6—H6119.1C13—C12—H12124.1
C7—C6—H6119.1S2—C12—H12124.1
C10—C11—S2112.85 (15)
C4—C3—C5—C6178.38 (18)C5—C3—C4—S1178.21 (13)
C2—C3—C5—C6−4.2 (3)C1—S1—C4—C3−0.77 (16)
C4—C3—C2—C10.2 (2)C9—C8—C7—O111.8 (3)
C5—C3—C2—C1−177.47 (18)C9—C8—C7—C6−167.02 (17)
C3—C5—C6—C7177.39 (16)C5—C6—C7—O1−8.4 (3)
C13—C10—C11—S2−0.2 (2)C5—C6—C7—C8170.49 (17)
C9—C10—C11—S2−179.36 (15)C3—C2—C1—S1−0.7 (2)
C12—S2—C11—C100.47 (17)C4—S1—C1—C20.87 (17)
C7—C8—C9—C10179.69 (17)C11—C10—C13—C12−0.2 (3)
C11—C10—C9—C8−170.5 (2)C9—C10—C13—C12178.87 (18)
C13—C10—C9—C810.5 (3)C10—C13—C12—S20.6 (2)
C2—C3—C4—S10.5 (2)C11—S2—C12—C13−0.61 (18)
Cg1 and Cg2 are the centroids of the S1,C1–C4 and S2,C10–C13 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C1—H1···O1i0.932.493.256 (2)140
C12—H12···O1ii0.932.443.355 (2)169
C2—H2···Cg1iii0.932.863.671 (2)147
C4—H4···Cg1iv0.932.973.809 (2)151
C11—H11···Cg2iv0.932.833.702 (2)156
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the S1,C1–C4 and S2,C10–C13 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯O1i0.932.493.256 (2)140
C12—H12⋯O1ii0.932.443.355 (2)169
C2—H2⋯Cg1iii0.932.863.671 (2)147
C4—H4⋯Cg1iv0.932.973.809 (2)151
C11—H11⋯Cg2iv0.932.833.702 (2)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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