Literature DB >> 22058963

3-{1-[2-(2-Chloro-phen-yl)hydrazinyl-idene]-2,2,2-trifluoro-eth-yl}-7-diethyl-amino-2H-chromen-2-one.

Hao Chen1, Li Cai, Chaochao Yu, Hongqi Li.   

Abstract

The title compound, C(21)H(19)ClF(3)N(3)O(2), has a structure related to other coumarin derivatives that have been used as fluorescent probes of metal ions. The dihedral angle between the coumarin ring system and the chlorobenzene ring is 42.99 (9)°. Intra-molecular hydrogen bonding occurs via N-H⋯O and N-H⋯Cl inter-actions, generating S(7) and S(5) rings, respectively. The crystal packing is stabilized by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22058963      PMCID: PMC3200584          DOI: 10.1107/S1600536811031916

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of coumarins and coumarin derivatives, see: Trenor et al. (2004 ▶); Starcevic et al. (2011 ▶); Danko et al. (2011 ▶). For the synthesis of the title compound and related structures, see: Li et al. (2011 ▶).

Experimental

Crystal data

C21H19ClF3N3O2 M = 437.84 Orthorhombic, a = 7.940 (6) Å b = 12.602 (9) Å c = 20.233 (15) Å V = 2025 (3) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.954, T max = 0.958 10369 measured reflections 3576 independent reflections 3162 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.078 S = 1.03 3576 reflections 273 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1511 Friedel pairs Flack parameter: −0.09 (6) Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031916/lr2022sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031916/lr2022Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811031916/lr2022Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H19ClF3N3O2Dx = 1.436 Mg m3
Mr = 437.84Melting point = 423–425 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
a = 7.940 (6) ÅCell parameters from 3770 reflections
b = 12.602 (9) Åθ = 2.6–24.7°
c = 20.233 (15) ŵ = 0.24 mm1
V = 2025 (3) Å3T = 296 K
Z = 4Block, orange
F(000) = 9040.20 × 0.20 × 0.18 mm
Bruker APEXII CCD diffractometer3576 independent reflections
Radiation source: fine-focus sealed tube3162 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 25.1°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −9→9
Tmin = 0.954, Tmax = 0.958k = −15→9
10369 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.078w = 1/[σ2(Fo2) + (0.0416P)2 + 0.1045P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3576 reflectionsΔρmax = 0.15 e Å3
273 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 1511 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.09 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.0571 (3)0.51038 (15)0.15673 (9)0.0426 (5)
C2−0.0012 (3)0.46256 (15)0.09683 (10)0.0479 (5)
H20.02920.39130.09700.058*
C30.0088 (3)0.51828 (14)0.03965 (10)0.0450 (5)
H30.04470.48420.00140.054*
C4−0.0343 (2)0.62689 (14)0.03692 (9)0.0382 (4)
C5−0.0249 (2)0.69109 (14)−0.01980 (10)0.0391 (4)
H50.00820.6604−0.05950.047*
C6−0.0629 (2)0.79729 (14)−0.01872 (9)0.0358 (4)
C7−0.1134 (3)0.84426 (14)0.04343 (9)0.0392 (4)
C8−0.0900 (2)0.67227 (13)0.09569 (9)0.0366 (4)
C9−0.1056 (3)0.61729 (14)0.15382 (9)0.0415 (5)
H9−0.14810.65080.19120.050*
C10−0.0636 (2)0.86150 (14)−0.08005 (8)0.0363 (4)
C110.1033 (2)1.12141 (14)−0.06355 (9)0.0382 (4)
C120.1722 (3)1.18859 (16)−0.01670 (10)0.0471 (5)
C130.2242 (3)1.29033 (17)−0.03257 (12)0.0564 (6)
H130.27011.3341−0.00030.068*
C140.2075 (3)1.32630 (17)−0.09657 (12)0.0613 (6)
H140.24301.3942−0.10800.074*
C150.1377 (3)1.26061 (16)−0.14320 (11)0.0559 (6)
H150.12421.2851−0.18620.067*
C160.0874 (3)1.15921 (15)−0.12760 (10)0.0456 (5)
H160.04241.1157−0.16030.055*
C17−0.1226 (3)0.80735 (15)−0.14206 (10)0.0434 (5)
C180.0107 (3)0.34867 (17)0.21991 (12)0.0607 (6)
H18A−0.01710.30800.18070.073*
H18B−0.03740.31240.25780.073*
C190.1987 (3)0.3531 (2)0.22744 (16)0.0921 (9)
H19A0.24650.39070.19070.138*
H19B0.24310.28230.22870.138*
H19C0.22660.38920.26780.138*
C20−0.1199 (3)0.50530 (18)0.27618 (10)0.0596 (6)
H20A−0.07630.57720.27780.071*
H20B−0.07380.46670.31350.071*
C21−0.3098 (3)0.50846 (19)0.28210 (12)0.0698 (7)
H21A−0.35580.54890.24620.105*
H21B−0.34050.54110.32330.105*
H21C−0.35350.43750.28070.105*
Cl10.19498 (10)1.14505 (5)0.06447 (3)0.0753 (2)
F1−0.24651 (16)0.73715 (9)−0.13101 (6)0.0567 (3)
F20.00093 (17)0.75115 (10)−0.17132 (6)0.0632 (4)
F3−0.17985 (19)0.87363 (10)−0.18810 (5)0.0661 (4)
N1−0.0641 (2)0.45457 (13)0.21455 (9)0.0514 (4)
N2−0.0139 (2)0.95674 (12)−0.09268 (8)0.0397 (4)
N30.0552 (2)1.01831 (12)−0.04584 (8)0.0437 (4)
H3A0.06940.9952−0.00620.052*
O1−0.12920 (18)0.77888 (9)0.09745 (6)0.0415 (3)
O2−0.1471 (2)0.93702 (10)0.05297 (6)0.0522 (4)
U11U22U33U12U13U23
C10.0369 (11)0.0411 (11)0.0499 (11)−0.0028 (9)−0.0021 (9)0.0060 (9)
C20.0502 (13)0.0323 (10)0.0613 (12)0.0059 (10)0.0028 (11)0.0016 (9)
C30.0496 (12)0.0335 (10)0.0520 (11)0.0050 (9)0.0082 (10)−0.0049 (9)
C40.0382 (11)0.0322 (9)0.0441 (10)0.0007 (8)0.0012 (8)−0.0024 (8)
C50.0382 (11)0.0361 (10)0.0430 (10)0.0023 (8)0.0020 (9)−0.0069 (8)
C60.0337 (10)0.0334 (9)0.0404 (10)−0.0007 (8)0.0015 (8)−0.0041 (8)
C70.0395 (11)0.0338 (10)0.0441 (10)0.0006 (9)0.0034 (9)−0.0006 (8)
C80.0356 (11)0.0283 (9)0.0458 (11)0.0003 (8)−0.0020 (9)−0.0039 (8)
C90.0448 (12)0.0373 (10)0.0423 (11)−0.0002 (9)0.0035 (9)−0.0008 (8)
C100.0359 (11)0.0332 (10)0.0398 (10)0.0001 (8)−0.0001 (8)−0.0045 (8)
C110.0341 (11)0.0338 (9)0.0467 (10)0.0001 (8)0.0010 (9)−0.0045 (9)
C120.0439 (12)0.0480 (12)0.0493 (11)−0.0006 (9)−0.0033 (10)−0.0109 (9)
C130.0489 (14)0.0448 (12)0.0755 (15)−0.0057 (11)0.0002 (12)−0.0199 (11)
C140.0652 (17)0.0379 (11)0.0809 (16)−0.0099 (11)0.0106 (14)−0.0033 (12)
C150.0653 (15)0.0442 (12)0.0584 (12)−0.0021 (11)0.0072 (12)0.0072 (11)
C160.0494 (12)0.0402 (11)0.0470 (11)−0.0022 (9)0.0002 (10)−0.0045 (9)
C170.0439 (12)0.0416 (10)0.0448 (11)0.0006 (10)0.0007 (10)−0.0035 (9)
C180.0596 (15)0.0501 (13)0.0723 (14)0.0051 (12)0.0076 (13)0.0251 (12)
C190.0581 (18)0.098 (2)0.120 (2)0.0182 (16)0.0011 (17)0.0512 (19)
C200.0794 (18)0.0557 (13)0.0437 (12)0.0008 (13)−0.0060 (11)0.0080 (10)
C210.0807 (19)0.0722 (16)0.0566 (14)0.0012 (15)0.0098 (13)0.0013 (12)
Cl10.0938 (5)0.0819 (4)0.0501 (3)−0.0075 (4)−0.0206 (3)−0.0080 (3)
F10.0522 (7)0.0562 (7)0.0616 (7)−0.0130 (6)−0.0040 (6)−0.0129 (6)
F20.0581 (8)0.0710 (8)0.0604 (7)0.0048 (7)0.0106 (6)−0.0272 (6)
F30.0926 (11)0.0582 (8)0.0474 (7)0.0008 (7)−0.0190 (7)−0.0007 (6)
N10.0567 (12)0.0434 (9)0.0542 (10)0.0047 (9)0.0003 (9)0.0121 (8)
N20.0408 (10)0.0356 (9)0.0429 (8)0.0006 (7)0.0006 (7)−0.0048 (7)
N30.0537 (11)0.0375 (8)0.0398 (9)−0.0064 (8)−0.0056 (7)−0.0017 (7)
O10.0534 (9)0.0311 (6)0.0401 (7)0.0056 (6)0.0076 (6)−0.0014 (6)
O20.0747 (11)0.0300 (7)0.0519 (8)0.0090 (7)0.0138 (8)−0.0026 (6)
C1—N11.366 (3)C13—H130.9300
C1—C91.402 (3)C14—C151.372 (3)
C1—C21.424 (3)C14—H140.9300
C2—C31.356 (3)C15—C161.376 (3)
C2—H20.9300C15—H150.9300
C3—C41.412 (3)C16—H160.9300
C3—H30.9300C17—F31.331 (2)
C4—C81.392 (3)C17—F11.342 (2)
C4—C51.406 (3)C17—F21.347 (2)
C5—C61.372 (3)C18—N11.465 (3)
C5—H50.9300C18—C191.501 (4)
C6—C71.447 (3)C18—H18A0.9700
C6—C101.481 (3)C18—H18B0.9700
C7—O21.215 (2)C19—H19A0.9600
C7—O11.374 (2)C19—H19B0.9600
C8—C91.371 (3)C19—H19C0.9600
C8—O11.380 (2)C20—N11.470 (3)
C9—H90.9300C20—C211.513 (4)
C10—N21.289 (2)C20—H20A0.9700
C10—C171.503 (3)C20—H20B0.9700
C11—C121.384 (3)C21—H21A0.9600
C11—C161.387 (3)C21—H21B0.9600
C11—N31.401 (2)C21—H21C0.9600
C12—C131.385 (3)N2—N31.342 (2)
C12—Cl11.741 (2)N3—H3A0.8600
C13—C141.378 (3)
N1—C1—C9121.30 (18)C14—C15—H15119.3
N1—C1—C2121.56 (18)C16—C15—H15119.3
C9—C1—C2117.14 (17)C15—C16—C11120.48 (19)
C3—C2—C1121.68 (18)C15—C16—H16119.8
C3—C2—H2119.2C11—C16—H16119.8
C1—C2—H2119.2F3—C17—F1106.26 (17)
C2—C3—C4121.42 (17)F3—C17—F2105.71 (17)
C2—C3—H3119.3F1—C17—F2105.10 (15)
C4—C3—H3119.3F3—C17—C10113.93 (16)
C8—C4—C5118.53 (16)F1—C17—C10112.88 (16)
C8—C4—C3116.23 (16)F2—C17—C10112.26 (17)
C5—C4—C3125.24 (17)N1—C18—C19112.1 (2)
C6—C5—C4122.46 (18)N1—C18—H18A109.2
C6—C5—H5118.8C19—C18—H18A109.2
C4—C5—H5118.8N1—C18—H18B109.2
C5—C6—C7118.29 (18)C19—C18—H18B109.2
C5—C6—C10121.36 (17)H18A—C18—H18B107.9
C7—C6—C10120.22 (16)C18—C19—H19A109.5
O2—C7—O1115.49 (16)C18—C19—H19B109.5
O2—C7—C6126.37 (17)H19A—C19—H19B109.5
O1—C7—C6118.12 (15)C18—C19—H19C109.5
C9—C8—O1116.72 (16)H19A—C19—H19C109.5
C9—C8—C4123.65 (17)H19B—C19—H19C109.5
O1—C8—C4119.61 (16)N1—C20—C21112.3 (2)
C8—C9—C1119.79 (17)N1—C20—H20A109.1
C8—C9—H9120.1C21—C20—H20A109.1
C1—C9—H9120.1N1—C20—H20B109.1
N2—C10—C6132.33 (16)C21—C20—H20B109.1
N2—C10—C17110.65 (16)H20A—C20—H20B107.9
C6—C10—C17116.90 (16)C20—C21—H21A109.5
C12—C11—C16117.78 (18)C20—C21—H21B109.5
C12—C11—N3120.01 (18)H21A—C21—H21B109.5
C16—C11—N3122.20 (17)C20—C21—H21C109.5
C11—C12—C13121.7 (2)H21A—C21—H21C109.5
C11—C12—Cl1119.64 (16)H21B—C21—H21C109.5
C13—C12—Cl1118.65 (17)C1—N1—C18121.08 (18)
C14—C13—C12119.6 (2)C1—N1—C20120.98 (17)
C14—C13—H13120.2C18—N1—C20117.11 (18)
C12—C13—H13120.2C10—N2—N3121.57 (16)
C15—C14—C13119.1 (2)N2—N3—C11117.85 (16)
C15—C14—H14120.4N2—N3—H3A121.1
C13—C14—H14120.4C11—N3—H3A121.1
C14—C15—C16121.3 (2)C7—O1—C8122.86 (14)
N1—C1—C2—C3−178.8 (2)Cl1—C12—C13—C14179.90 (18)
C9—C1—C2—C31.5 (3)C12—C13—C14—C150.7 (4)
C1—C2—C3—C40.7 (3)C13—C14—C15—C16−1.3 (4)
C2—C3—C4—C8−1.1 (3)C14—C15—C16—C111.2 (3)
C2—C3—C4—C5178.8 (2)C12—C11—C16—C15−0.5 (3)
C8—C4—C5—C62.4 (3)N3—C11—C16—C15−179.3 (2)
C3—C4—C5—C6−177.6 (2)N2—C10—C17—F3−27.1 (2)
C4—C5—C6—C70.3 (3)C6—C10—C17—F3156.38 (17)
C4—C5—C6—C10−175.63 (17)N2—C10—C17—F1−148.43 (17)
C5—C6—C7—O2178.2 (2)C6—C10—C17—F135.1 (2)
C10—C6—C7—O2−5.8 (3)N2—C10—C17—F293.0 (2)
C5—C6—C7—O1−3.3 (3)C6—C10—C17—F2−83.5 (2)
C10—C6—C7—O1172.71 (16)C9—C1—N1—C18−170.4 (2)
C5—C4—C8—C9179.41 (19)C2—C1—N1—C189.9 (3)
C3—C4—C8—C9−0.6 (3)C9—C1—N1—C20−1.1 (3)
C5—C4—C8—O1−2.0 (3)C2—C1—N1—C20179.2 (2)
C3—C4—C8—O1177.93 (18)C19—C18—N1—C177.9 (3)
O1—C8—C9—C1−175.76 (18)C19—C18—N1—C20−91.8 (3)
C4—C8—C9—C12.8 (3)C21—C20—N1—C182.7 (3)
N1—C1—C9—C8177.09 (18)C21—C20—N1—C18−107.6 (2)
C2—C1—C9—C8−3.2 (3)C6—C10—N2—N30.4 (3)
C5—C6—C10—N2−140.5 (2)C17—C10—N2—N3−175.39 (17)
C7—C6—C10—N243.6 (3)C10—N2—N3—C11−178.98 (17)
C5—C6—C10—C1735.1 (3)C12—C11—N3—N2178.80 (17)
C7—C6—C10—C17−140.80 (19)C16—C11—N3—N2−2.4 (3)
C16—C11—C12—C13−0.1 (3)O2—C7—O1—C8−177.57 (17)
N3—C11—C12—C13178.75 (19)C6—C7—O1—C83.7 (3)
C16—C11—C12—Cl1−179.98 (15)C9—C8—O1—C7177.61 (18)
N3—C11—C12—Cl1−1.2 (3)C4—C8—O1—C7−1.1 (3)
C11—C12—C13—C140.0 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···Cl10.862.572.960 (2)109.
N3—H3A···O20.862.222.761 (3)121.
C14—H14···O2i0.932.553.316 (3)140.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯Cl10.862.572.960 (2)109
N3—H3A⋯O20.862.222.761 (3)121
C14—H14⋯O2i0.932.553.316 (3)140

Symmetry code: (i) .

  3 in total

Review 1.  Coumarins in polymers: from light harvesting to photo-cross-linkable tissue scaffolds.

Authors:  Scott R Trenor; Allan R Shultz; Brian J Love; Timothy E Long
Journal:  Chem Rev       Date:  2004-06       Impact factor: 60.622

2.  Synthesis and biological evaluation of (6- and 7-phenyl) coumarin derivatives as selective nonsteroidal inhibitors of 17β-hydroxysteroid dehydrogenase type 1.

Authors:  Stefan Starcević; Petra Brozic; Samo Turk; Jozko Cesar; Tea Lanisnik Rizner; Stanislav Gobec
Journal:  J Med Chem       Date:  2010-12-07       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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