Literature DB >> 22058950

(2S)-3-(1H-Indol-3-yl)-2-(4-methyl-benzene-sulfonamido)-propionic acid monohydrate.

Islam Ullah Khan, Muhammad Nadeem Arshad, Hafiz Mubashar-Ur-Rehman, William T A Harrison, Muhammad Baqir Ali.   

Abstract

In the title compound, C(18)H(18)N(2)O(4)S·H(2)O, the indole and toluene ring systems are oriented at a dihedral angle of 84.51 (9)°. In the crystal, the components are linked by N-H⋯O, O-H⋯O, C-H⋯O and N-H⋯π inter-actions. These include a short link from the α-C atom of the amino acid fragment.

Entities:  

Year:  2011        PMID: 22058950      PMCID: PMC3200826          DOI: 10.1107/S1600536811032089

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Deng & Mani (2006 ▶). For background to sulfonamides in biology, see: Parka et al. (2009 ▶); Wang et al. (2007 ▶). For related structures, see: Li et al. (2008 ▶); Khan et al. (2011 ▶).

Experimental

Crystal data

C18H18N2O4S·H2O M = 376.42 Monoclinic, a = 8.4531 (10) Å b = 5.2521 (5) Å c = 20.867 (2) Å β = 98.056 (4)° V = 917.30 (17) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.28 × 0.11 × 0.09 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.944, T max = 0.982 10939 measured reflections 4475 independent reflections 2135 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.107 S = 0.94 4475 reflections 243 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1951 Friedel pairs Flack parameter: −0.05 (10) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997) ▶ and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811032089/wn2443sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032089/wn2443Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811032089/wn2443Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18N2O4S·H2OF(000) = 396
Mr = 376.42Dx = 1.363 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1381 reflections
a = 8.4531 (10) Åθ = 2.4–19.2°
b = 5.2521 (5) ŵ = 0.21 mm1
c = 20.867 (2) ÅT = 296 K
β = 98.056 (4)°Needle, colorless
V = 917.30 (17) Å30.28 × 0.11 × 0.09 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer4475 independent reflections
Radiation source: fine-focus sealed tube2135 reflections with I > 2σ(I)
graphiteRint = 0.064
φ and ω scansθmax = 28.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −11→10
Tmin = 0.944, Tmax = 0.982k = −6→7
10939 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.034P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94(Δ/σ)max < 0.001
4475 reflectionsΔρmax = 0.20 e Å3
243 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), 1951 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.05 (10)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3845 (4)0.3366 (8)0.10176 (15)0.0401 (8)
C20.2730 (4)0.1527 (8)0.08284 (18)0.0527 (10)
H20.25280.02430.11130.063*
C30.1902 (5)0.1612 (9)0.0202 (2)0.0679 (12)
H30.11500.03580.00690.081*
C40.2171 (5)0.3511 (11)−0.02263 (17)0.0619 (11)
C50.3258 (5)0.5359 (10)−0.0017 (2)0.0675 (12)
H50.34350.6676−0.02960.081*
C60.4098 (4)0.5318 (8)0.05980 (19)0.0561 (10)
H60.48320.65970.07310.067*
C70.2547 (4)0.3994 (6)0.24734 (14)0.0352 (8)
H70.21400.25920.21870.042*
C80.1348 (5)0.6132 (8)0.23914 (16)0.0452 (10)
C90.2837 (4)0.2991 (7)0.31717 (14)0.0450 (9)
H9A0.18230.24710.32980.054*
H9B0.35160.14980.31870.054*
C100.3599 (5)0.4909 (7)0.36487 (16)0.0454 (9)
C110.2860 (5)0.6835 (8)0.39356 (18)0.0585 (11)
H110.17690.71690.38680.070*
C120.5453 (6)0.7203 (8)0.43133 (18)0.0552 (11)
C130.5242 (5)0.5127 (7)0.38869 (15)0.0451 (9)
C140.6611 (5)0.3742 (8)0.37809 (17)0.0539 (10)
H140.65220.23700.34970.065*
C150.8074 (6)0.4441 (8)0.4102 (2)0.0704 (13)
H150.89770.35170.40370.084*
C160.8233 (6)0.6528 (10)0.4526 (2)0.0782 (14)
H160.92390.69740.47360.094*
C170.6930 (6)0.7908 (9)0.46353 (18)0.0725 (14)
H170.70310.92850.49180.087*
C180.1307 (5)0.3506 (12)−0.09171 (16)0.0977 (16)
H18A0.08960.5178−0.10270.147*
H18B0.04390.2311−0.09520.147*
H18C0.20390.3026−0.12080.147*
S10.49606 (10)0.32979 (18)0.17916 (4)0.0446 (2)
N10.4035 (3)0.4923 (6)0.22720 (13)0.0402 (7)
H1N0.413 (4)0.659 (7)0.2271 (15)0.048*
N20.3962 (5)0.8178 (7)0.43322 (15)0.0681 (11)
H2N0.375 (5)0.941 (8)0.452 (2)0.082*
O10.6432 (3)0.4579 (5)0.17601 (12)0.0647 (8)
O20.4980 (3)0.0709 (4)0.20122 (12)0.0553 (7)
O3−0.0007 (3)0.5429 (6)0.25925 (15)0.0744 (8)
H3O−0.05660.66860.26230.112*
O40.1563 (3)0.8175 (5)0.21751 (12)0.0623 (7)
O50.8218 (3)0.9515 (6)0.26435 (15)0.1120 (13)
H1W0.72600.98760.24250.134*
H2W0.83930.97470.30750.134*
U11U22U33U12U13U23
C10.0351 (19)0.042 (2)0.0446 (19)0.002 (2)0.0098 (15)0.000 (2)
C20.048 (3)0.061 (3)0.048 (2)−0.004 (2)0.004 (2)0.000 (2)
C30.051 (3)0.087 (4)0.063 (3)−0.008 (3)0.000 (2)−0.018 (3)
C40.058 (3)0.090 (3)0.039 (2)0.032 (3)0.009 (2)−0.003 (3)
C50.075 (3)0.075 (3)0.054 (3)0.010 (3)0.018 (3)0.015 (3)
C60.054 (3)0.057 (3)0.057 (3)−0.004 (2)0.006 (2)0.007 (2)
C70.036 (2)0.030 (2)0.0386 (19)−0.0023 (15)0.0010 (15)−0.0027 (14)
C80.044 (3)0.043 (2)0.045 (2)0.0024 (19)−0.0057 (19)0.005 (2)
C90.052 (2)0.036 (2)0.047 (2)0.0024 (19)0.0053 (17)0.0048 (19)
C100.063 (3)0.036 (2)0.037 (2)0.0040 (19)0.009 (2)0.0035 (18)
C110.075 (3)0.054 (3)0.044 (2)0.011 (2)0.000 (2)0.010 (2)
C120.083 (3)0.045 (2)0.036 (2)−0.002 (2)0.001 (2)0.0037 (18)
C130.071 (3)0.035 (2)0.0279 (19)0.006 (2)0.0029 (19)0.0029 (17)
C140.064 (3)0.048 (3)0.048 (2)−0.004 (2)0.003 (2)−0.005 (2)
C150.070 (3)0.077 (3)0.064 (3)−0.001 (2)0.007 (2)−0.001 (2)
C160.095 (4)0.081 (4)0.053 (3)−0.030 (3)−0.008 (3)0.002 (3)
C170.121 (4)0.053 (3)0.041 (2)−0.021 (3)0.003 (3)−0.004 (2)
C180.091 (3)0.161 (5)0.040 (2)0.040 (4)0.006 (2)−0.013 (3)
S10.0341 (5)0.0464 (6)0.0523 (5)0.0018 (5)0.0027 (4)0.0029 (6)
N10.0448 (19)0.0351 (17)0.0408 (17)−0.0059 (14)0.0063 (14)−0.0042 (15)
N20.115 (3)0.045 (2)0.044 (2)0.018 (3)0.008 (2)−0.006 (2)
O10.0332 (16)0.084 (2)0.0765 (19)−0.0112 (14)0.0066 (14)0.0007 (16)
O20.0540 (18)0.0403 (16)0.0704 (17)0.0153 (13)0.0050 (14)0.0139 (14)
O30.0496 (19)0.077 (2)0.100 (2)0.0180 (15)0.0216 (17)0.0269 (19)
O40.0631 (17)0.0382 (15)0.0824 (17)0.0088 (18)−0.0015 (13)0.0116 (18)
O50.081 (2)0.143 (3)0.104 (2)0.065 (2)−0.0165 (19)−0.035 (2)
C1—C21.369 (5)C11—H110.9300
C1—C61.384 (5)C12—N21.366 (5)
C1—S11.753 (3)C12—C171.383 (6)
C2—C31.395 (5)C12—C131.403 (5)
C2—H20.9300C13—C141.411 (5)
C3—C41.379 (6)C14—C151.372 (5)
C3—H30.9300C14—H140.9300
C4—C51.366 (6)C15—C161.404 (6)
C4—C181.522 (5)C15—H150.9300
C5—C61.377 (5)C16—C171.365 (6)
C5—H50.9300C16—H160.9300
C6—H60.9300C17—H170.9300
C7—N11.465 (4)C18—H18A0.9600
C7—C81.506 (5)C18—H18B0.9600
C7—C91.536 (4)C18—H18C0.9600
C7—H70.9800S1—O11.423 (2)
C8—O41.188 (4)S1—O21.435 (2)
C8—O31.327 (4)S1—N11.601 (3)
C9—C101.497 (5)N1—H1N0.88 (4)
C9—H9A0.9700N2—H2N0.79 (4)
C9—H9B0.9700O3—H3O0.8200
C10—C111.370 (5)O5—H1W0.8926
C10—C131.412 (5)O5—H2W0.9002
C11—N21.354 (5)
C2—C1—C6120.1 (3)N2—C12—C17131.2 (4)
C2—C1—S1120.7 (3)N2—C12—C13105.9 (4)
C6—C1—S1119.2 (3)C17—C12—C13122.8 (4)
C1—C2—C3118.9 (4)C12—C13—C14117.8 (4)
C1—C2—H2120.6C12—C13—C10108.5 (4)
C3—C2—H2120.6C14—C13—C10133.7 (3)
C4—C3—C2121.6 (4)C15—C14—C13119.3 (4)
C4—C3—H3119.2C15—C14—H14120.3
C2—C3—H3119.2C13—C14—H14120.3
C5—C4—C3118.1 (4)C14—C15—C16121.1 (4)
C5—C4—C18121.1 (5)C14—C15—H15119.4
C3—C4—C18120.8 (5)C16—C15—H15119.4
C4—C5—C6121.5 (4)C17—C16—C15120.8 (5)
C4—C5—H5119.2C17—C16—H16119.6
C6—C5—H5119.2C15—C16—H16119.6
C5—C6—C1119.7 (4)C16—C17—C12118.2 (5)
C5—C6—H6120.1C16—C17—H17120.9
C1—C6—H6120.1C12—C17—H17120.9
N1—C7—C8108.1 (3)C4—C18—H18A109.5
N1—C7—C9110.9 (3)C4—C18—H18B109.5
C8—C7—C9112.2 (3)H18A—C18—H18B109.5
N1—C7—H7108.5C4—C18—H18C109.5
C8—C7—H7108.5H18A—C18—H18C109.5
C9—C7—H7108.5H18B—C18—H18C109.5
O4—C8—O3123.8 (4)O1—S1—O2119.49 (16)
O4—C8—C7125.5 (4)O1—S1—N1106.46 (16)
O3—C8—C7110.7 (3)O2—S1—N1106.77 (15)
C10—C9—C7113.4 (3)O1—S1—C1107.97 (16)
C10—C9—H9A108.9O2—S1—C1107.19 (18)
C7—C9—H9A108.9N1—S1—C1108.60 (15)
C10—C9—H9B108.9C7—N1—S1121.1 (2)
C7—C9—H9B108.9C7—N1—H1N114 (2)
H9A—C9—H9B107.7S1—N1—H1N119 (2)
C11—C10—C13105.8 (3)C11—N2—C12110.2 (4)
C11—C10—C9127.4 (4)C11—N2—H2N123 (3)
C13—C10—C9126.8 (3)C12—N2—H2N126 (3)
N2—C11—C10109.6 (4)C8—O3—H3O109.5
N2—C11—H11125.2H1W—O5—H2W119.5
C10—C11—H11125.2
C6—C1—C2—C32.2 (5)C9—C10—C13—C12178.8 (3)
S1—C1—C2—C3−178.1 (3)C11—C10—C13—C14180.0 (4)
C1—C2—C3—C4−0.6 (6)C9—C10—C13—C14−1.0 (6)
C2—C3—C4—C5−1.2 (6)C12—C13—C14—C151.0 (5)
C2—C3—C4—C18177.4 (4)C10—C13—C14—C15−179.2 (4)
C3—C4—C5—C61.5 (6)C13—C14—C15—C16−0.8 (6)
C18—C4—C5—C6−177.1 (4)C14—C15—C16—C170.5 (6)
C4—C5—C6—C10.0 (6)C15—C16—C17—C12−0.4 (6)
C2—C1—C6—C5−2.0 (5)N2—C12—C17—C16178.8 (4)
S1—C1—C6—C5178.4 (3)C13—C12—C17—C160.6 (6)
N1—C7—C8—O42.9 (5)C2—C1—S1—O1153.8 (3)
C9—C7—C8—O4125.5 (4)C6—C1—S1—O1−26.6 (3)
N1—C7—C8—O3−177.4 (3)C2—C1—S1—O223.8 (3)
C9—C7—C8—O3−54.8 (4)C6—C1—S1—O2−156.5 (3)
N1—C7—C9—C1055.8 (4)C2—C1—S1—N1−91.2 (3)
C8—C7—C9—C10−65.2 (4)C6—C1—S1—N188.5 (3)
C7—C9—C10—C1182.0 (4)C8—C7—N1—S1−132.1 (3)
C7—C9—C10—C13−96.8 (4)C9—C7—N1—S1104.5 (3)
C13—C10—C11—N2−0.3 (4)O1—S1—N1—C7−173.1 (3)
C9—C10—C11—N2−179.3 (3)O2—S1—N1—C7−44.4 (3)
N2—C12—C13—C14−179.5 (3)C1—S1—N1—C770.8 (3)
C17—C12—C13—C14−0.9 (5)C10—C11—N2—C120.7 (4)
N2—C12—C13—C100.6 (4)C17—C12—N2—C11−179.3 (4)
C17—C12—C13—C10179.2 (4)C13—C12—N2—C11−0.8 (4)
C11—C10—C13—C12−0.2 (4)
Cg3 is the centroid of the C12–C17 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.88 (4)2.37 (4)3.208 (4)160 (3)
N2—H2N···Cg3ii0.79 (4)2.85 (4)3.480 (4)139 (4)
O3—H3O···O5iii0.821.812.629 (4)177
C7—H7···O4iv0.982.373.205 (4)143
C18—H18C···O1v0.962.593.456 (5)151
O5—H1W···O2i0.892.052.935 (4)174
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C12–C17 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.88 (4)2.37 (4)3.208 (4)160 (3)
N2—H2NCg3ii0.79 (4)2.85 (4)3.480 (4)139 (4)
O3—H3O⋯O5iii0.821.812.629 (4)177
C7—H7⋯O4iv0.982.373.205 (4)143
C18—H18C⋯O1v0.962.593.456 (5)151
O5—H1W⋯O2i0.892.052.935 (4)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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