Literature DB >> 22058946

2-{(E)-[(4-Methyl-phen-yl)imino]-meth-yl}-4-nitro-phenol-2-{(E)-[(4-methyl-phen-yl)iminio]meth-yl}-4-nitro-phenolate (0.60/0.40).

M Nawaz Tahir, Hazoor Ahmad Shad, Riaz H Tariq.   

Abstract

The crystal of the title compound, 0.6C(14)H(12)N(2)O(3)·0.4C(14)H(12)N(2)O(3), contains a mixture of its neutral (OH containing) and zwitterionic (NH containing) forms, in a 0.60 (4):0.40 (4) ratio. The former generates an S(6) loop via an intra-molecular O-H⋯N hydrogen bond and the latter generates an S(6) loop via an N-H⋯O hydro-gren bond. The aromatic rings are oriented at a dihedral angle of 42.52 (10)°. In the crystal, C-H⋯π inter-actions occur and aromatic π-π stacking inter-actions [centroid-centroid separations = 3.7106 (12) and 3.9177 (13) Å] consolidate the packing.

Entities:  

Year:  2011        PMID: 22058946      PMCID: PMC3200654          DOI: 10.1107/S1600536811032028

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hijji et al. (2009 ▶); Kılıç et al. (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

0.6C14H12N2O3·0.4C14H12N2O3 M = 256.26 Monoclinic, a = 14.0623 (6) Å b = 14.1723 (8) Å c = 6.2357 (3) Å β = 95.400 (2)° V = 1237.23 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.25 × 0.22 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.976, T max = 0.985 9733 measured reflections 2238 independent reflections 1395 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.133 S = 1.03 2238 reflections 181 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT (Bruker, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811032028/hb6352sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032028/hb6352Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811032028/hb6352Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
0.6C14H12N2O3·0.4C14H12N2O3F(000) = 536
Mr = 256.26Dx = 1.376 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1395 reflections
a = 14.0623 (6) Åθ = 2.0–25.3°
b = 14.1723 (8) ŵ = 0.10 mm1
c = 6.2357 (3) ÅT = 296 K
β = 95.400 (2)°Prism, yellow
V = 1237.23 (11) Å30.25 × 0.22 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2238 independent reflections
Radiation source: fine-focus sealed tube1395 reflections with I > 2σ(I)
graphiteRint = 0.041
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.0°
ω scansh = −16→16
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −17→17
Tmin = 0.976, Tmax = 0.985l = −7→7
9733 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.133w = 1/[σ2(Fo2) + (0.0558P)2 + 0.2667P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2238 reflectionsΔρmax = 0.20 e Å3
181 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0052 (14)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.18732 (12)0.66637 (13)0.3141 (3)0.0536 (6)
O2−0.21627 (11)0.59616 (18)0.6085 (3)0.0928 (9)
O3−0.13153 (11)0.55621 (14)0.8965 (3)0.0676 (7)
N10.28626 (12)0.62025 (13)0.6653 (3)0.0406 (6)
N2−0.13922 (12)0.58577 (15)0.7115 (3)0.0499 (7)
C10.37651 (14)0.62162 (15)0.7884 (3)0.0379 (7)
C20.45601 (14)0.59352 (16)0.6902 (4)0.0452 (8)
C30.54536 (15)0.59847 (17)0.8003 (4)0.0507 (9)
C40.55810 (15)0.63374 (16)1.0085 (4)0.0465 (8)
C50.47796 (15)0.66189 (16)1.1032 (3)0.0453 (8)
C60.38783 (14)0.65645 (16)0.9965 (3)0.0429 (8)
C70.65595 (16)0.6427 (2)1.1264 (4)0.0708 (10)
C80.20829 (14)0.60487 (15)0.7508 (3)0.0394 (7)
C90.11702 (14)0.61460 (15)0.6278 (3)0.0353 (7)
C100.11017 (15)0.64786 (15)0.4120 (3)0.0392 (7)
C110.01983 (15)0.66214 (15)0.3029 (3)0.0431 (8)
C12−0.06138 (15)0.64214 (15)0.3987 (3)0.0431 (8)
C13−0.05334 (14)0.60742 (15)0.6096 (3)0.0382 (7)
C140.03375 (13)0.59379 (15)0.7226 (3)0.0365 (7)
H10.234 (4)0.652 (3)0.390 (10)0.0643*0.60 (4)
H20.449050.571220.549280.0542*
H30.598130.577820.733980.0608*
H50.485000.685231.243220.0544*
H60.334960.676051.063750.0515*
H7A0.653630.624141.273900.1061*
H7B0.676950.707051.120870.1061*
H7C0.699740.602701.059830.1061*
H80.210770.587130.894830.0472*
H110.014900.685610.163000.0517*
H12−0.121170.651490.324590.0517*
H140.037330.570650.862690.0438*
H1A0.274 (5)0.641 (4)0.518 (13)0.0487*0.40 (4)
U11U22U33U12U13U23
O10.0503 (10)0.0696 (13)0.0423 (10)−0.0045 (9)0.0123 (8)0.0082 (8)
O20.0349 (10)0.171 (2)0.0711 (13)0.0043 (12)−0.0028 (9)0.0236 (13)
O30.0485 (10)0.1043 (16)0.0511 (11)−0.0035 (9)0.0110 (8)0.0189 (10)
N10.0362 (10)0.0452 (12)0.0407 (11)0.0013 (8)0.0053 (8)0.0002 (9)
N20.0361 (10)0.0681 (14)0.0454 (12)−0.0001 (10)0.0039 (9)0.0003 (10)
C10.0328 (11)0.0393 (13)0.0417 (13)0.0008 (9)0.0045 (9)0.0027 (10)
C20.0424 (12)0.0507 (15)0.0435 (13)0.0027 (11)0.0094 (10)−0.0063 (11)
C30.0354 (12)0.0554 (16)0.0627 (16)0.0073 (11)0.0127 (11)−0.0019 (12)
C40.0390 (12)0.0473 (15)0.0524 (14)0.0023 (10)0.0008 (10)0.0044 (12)
C50.0457 (13)0.0513 (15)0.0391 (12)0.0015 (11)0.0044 (10)−0.0016 (11)
C60.0387 (12)0.0489 (14)0.0424 (13)0.0016 (10)0.0100 (10)−0.0003 (11)
C70.0458 (14)0.086 (2)0.0776 (19)0.0041 (14)−0.0102 (13)−0.0008 (16)
C80.0398 (12)0.0403 (14)0.0383 (12)0.0014 (10)0.0053 (10)0.0032 (10)
C90.0350 (11)0.0356 (12)0.0351 (12)−0.0005 (9)0.0030 (9)0.0003 (9)
C100.0432 (12)0.0378 (13)0.0372 (12)−0.0030 (10)0.0077 (10)−0.0014 (10)
C110.0537 (14)0.0440 (14)0.0309 (11)−0.0015 (11)0.0005 (10)0.0046 (10)
C120.0427 (12)0.0441 (14)0.0406 (13)0.0014 (10)−0.0067 (10)−0.0023 (10)
C130.0351 (11)0.0422 (14)0.0378 (12)−0.0019 (9)0.0055 (9)−0.0025 (10)
C140.0392 (11)0.0394 (13)0.0308 (11)−0.0002 (10)0.0029 (9)0.0007 (9)
O1—C101.320 (3)C9—C101.421 (3)
O2—N21.215 (2)C10—C111.398 (3)
O3—N21.223 (3)C11—C121.367 (3)
O1—H10.80 (6)C12—C131.399 (3)
N1—C11.420 (3)C13—C141.368 (3)
N1—C81.282 (3)C2—H20.9300
N2—C131.449 (3)C3—H30.9300
N1—H1A0.96 (8)C5—H50.9300
C1—C21.383 (3)C6—H60.9300
C1—C61.384 (3)C7—H7A0.9600
C2—C31.376 (3)C7—H7B0.9600
C3—C41.387 (3)C7—H7C0.9600
C4—C51.380 (3)C8—H80.9300
C4—C71.503 (3)C11—H110.9300
C5—C61.377 (3)C12—H120.9300
C8—C91.439 (3)C14—H140.9300
C9—C141.392 (3)
C10—O1—H1110 (4)N2—C13—C12119.32 (18)
C1—N1—C8122.22 (18)N2—C13—C14119.13 (17)
O2—N2—O3122.38 (18)C12—C13—C14121.55 (18)
O3—N2—C13118.87 (17)C9—C14—C13119.96 (18)
O2—N2—C13118.74 (18)C1—C2—H2120.00
C8—N1—H1A111 (4)C3—C2—H2120.00
C1—N1—H1A126 (4)C2—C3—H3119.00
N1—C1—C2118.38 (18)C4—C3—H3119.00
N1—C1—C6122.00 (18)C4—C5—H5119.00
C2—C1—C6119.45 (19)C6—C5—H5119.00
C1—C2—C3120.2 (2)C1—C6—H6120.00
C2—C3—C4121.1 (2)C5—C6—H6120.00
C3—C4—C5117.8 (2)C4—C7—H7A109.00
C3—C4—C7121.3 (2)C4—C7—H7B109.00
C5—C4—C7120.9 (2)C4—C7—H7C109.00
C4—C5—C6121.92 (19)H7A—C7—H7B109.00
C1—C6—C5119.51 (18)H7A—C7—H7C109.00
N1—C8—C9121.13 (18)H7B—C7—H7C109.00
C8—C9—C14119.82 (17)N1—C8—H8119.00
C8—C9—C10120.96 (18)C9—C8—H8119.00
C10—C9—C14119.20 (18)C10—C11—H11119.00
O1—C10—C9121.23 (19)C12—C11—H11119.00
O1—C10—C11119.66 (18)C11—C12—H12120.00
C9—C10—C11119.11 (18)C13—C12—H12120.00
C10—C11—C12121.02 (18)C9—C14—H14120.00
C11—C12—C13119.13 (19)C13—C14—H14120.00
C8—N1—C1—C2149.4 (2)C4—C5—C6—C10.2 (3)
C8—N1—C1—C6−35.4 (3)N1—C8—C9—C10−4.4 (3)
C1—N1—C8—C9172.72 (19)N1—C8—C9—C14177.4 (2)
O2—N2—C13—C121.9 (3)C8—C9—C10—O13.4 (3)
O2—N2—C13—C14−178.5 (2)C8—C9—C10—C11−175.9 (2)
O3—N2—C13—C12−179.4 (2)C14—C9—C10—O1−178.4 (2)
O3—N2—C13—C140.3 (3)C14—C9—C10—C112.3 (3)
N1—C1—C2—C3176.6 (2)C8—C9—C14—C13176.8 (2)
C6—C1—C2—C31.3 (3)C10—C9—C14—C13−1.4 (3)
N1—C1—C6—C5−175.7 (2)O1—C10—C11—C12178.9 (2)
C2—C1—C6—C5−0.5 (3)C9—C10—C11—C12−1.8 (3)
C1—C2—C3—C4−1.7 (4)C10—C11—C12—C130.4 (3)
C2—C3—C4—C51.3 (3)C11—C12—C13—N2−179.76 (19)
C2—C3—C4—C7−177.7 (2)C11—C12—C13—C140.6 (3)
C3—C4—C5—C6−0.6 (3)N2—C13—C14—C9−179.70 (19)
C7—C4—C5—C6178.4 (2)C12—C13—C14—C90.0 (3)
Cg1 and Cg2 are the centroids of the C1—C6 and C9—C14 rings, respectively.
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.80 (6)1.86 (6)2.566 (3)147 (6)
N1—H1A···O10.97 (8)1.71 (7)2.566 (3)146 (6)
C5—H5···Cg1i0.932.843.515 (2)130
C11—H11···Cg2ii0.932.823.490 (2)130
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1—C6 and C9—C14 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.80 (6)1.86 (6)2.566 (3)147 (6)
N1—H1A⋯O10.97 (8)1.71 (7)2.566 (3)146 (6)
C5—H5⋯Cg1i0.932.843.515 (2)130
C11—H11⋯Cg2ii0.932.823.490 (2)130

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(4-Methoxy-phen-yl)imino-meth-yl]-4-nitro-phenol.

Authors:  Işın Kılıç; Erbil Ağar; Ferda Erşahin; Samil Işık
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

3.  (E)-2-[(2-Hydr-oxy-5-nitro-phen-yl)iminiometh-yl]-4-nitro-phenolate.

Authors:  Yousef M Hijji; Belygona Barare; Ray J Butcher; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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