Literature DB >> 22058903

3,4,5-Trihy-droxy-benzohydrazidium perchlorate-3,4,5-trihy-droxy-benzohydrazide-water (1/1/1).

Abeer A Alhadi1, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

The crystal studied of the title compound, C(7)H(9)N(2)O(4) (+)·ClO(4) (-)·C(7)H(8)N(2)O(4)·H(2)O, was found to be a racemic twin with a 0.72 (18):0.28 (18) domain ratio. The hydrazidium group is close to planar, with an r.m.s deviation of 0.105 Å; the hydrazide group deviates more from planarity, with an r.m.s deviation of 0.174 Å. In the crystal, the hydrazidium cation, hydrazide mol-ecule, perchlorate anions and water mol-ecules are linked through O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds into a three-dimensional supra-molecular network. In addition, the benzene rings of the hydrazidium and hydrazide units are connected via π-π inter-actions into infinite chains along the c axis; the centroid-centroid distances are 3.486 (3) and 3.559 (3) Å.

Entities:  

Year:  2011        PMID: 22058903      PMCID: PMC3200764          DOI: 10.1107/S1600536811030595

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of trimeth­oxy­benzohydrazidium chloride, see: Saeed et al. (2008 ▶) and of 3,4,5–trimeth­oxy­benzohydrazide hemihydrate, see: Zareef et al. (2006 ▶).

Experimental

Crystal data

C7H9N2O4 +·ClO4 −·C7H8N2O4·H2O M = 486.78 Orthorhombic, a = 20.1213 (7) Å b = 12.9178 (4) Å c = 7.0122 (2) Å V = 1822.63 (10) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 100 K 0.15 × 0.04 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.957, T max = 0.991 14383 measured reflections 3393 independent reflections 2653 reflections with I > 2σ(I) R int = 0.092

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.109 S = 1.03 3393 reflections 335 parameters 22 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.53 e Å−3 Absolute structure: Flack (1983 ▶), 1545 Friedel pairs Flack parameter: 0.28 (11) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030595/lx2194sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030595/lx2194Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030595/lx2194Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H9N2O4+·ClO4·C7H8N2O4·H2OF(000) = 1008
Mr = 486.78Dx = 1.774 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1227 reflections
a = 20.1213 (7) Åθ = 3.2–27.0°
b = 12.9178 (4) ŵ = 0.30 mm1
c = 7.0122 (2) ÅT = 100 K
V = 1822.63 (10) Å3Needle, colorless
Z = 40.15 × 0.04 × 0.03 mm
Bruker APEXII CCD diffractometer3393 independent reflections
Radiation source: fine-focus sealed tube2653 reflections with I > 2σ(I)
graphiteRint = 0.092
φ and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −24→24
Tmin = 0.957, Tmax = 0.991k = −15→15
14383 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0535P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3393 reflectionsΔρmax = 0.39 e Å3
335 parametersΔρmin = −0.53 e Å3
22 restraintsAbsolute structure: Flack (1983), 1545 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.28 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.47204 (14)0.7004 (2)0.1226 (4)0.0100 (7)
O20.74400 (13)0.8918 (2)0.1487 (5)0.0141 (7)
H2O0.722 (2)0.945 (2)0.133 (8)0.021*
O30.78618 (15)0.7058 (2)0.2858 (4)0.0107 (7)
H3O0.795 (2)0.652 (2)0.343 (6)0.016*
O40.70017 (14)0.5426 (2)0.3081 (4)0.0121 (7)
H4O0.6714 (18)0.496 (3)0.301 (7)0.018*
N10.42795 (17)0.8931 (3)0.1273 (5)0.0095 (8)
H1A0.4015 (19)0.856 (3)0.054 (5)0.011*
H1B0.416 (2)0.880 (3)0.247 (3)0.011*
N20.49692 (17)0.8702 (3)0.1213 (6)0.0119 (9)
H2N0.5225 (18)0.921 (2)0.155 (7)0.014*
C10.5142 (2)0.7687 (3)0.1322 (6)0.0104 (9)
C20.58680 (19)0.7498 (3)0.1540 (7)0.0075 (8)
C30.6324 (2)0.8282 (3)0.1261 (6)0.0107 (9)
H30.61820.89290.07600.013*
C40.6987 (2)0.8133 (3)0.1707 (6)0.0089 (9)
C50.7199 (2)0.7175 (3)0.2372 (6)0.0097 (9)
C60.6750 (2)0.6371 (3)0.2535 (6)0.0097 (9)
C70.6085 (2)0.6524 (3)0.2159 (6)0.0101 (9)
H70.57760.59740.23170.012*
O50.46214 (14)0.4747 (2)0.3255 (4)0.0143 (7)
O60.23020 (14)0.1848 (2)0.2092 (4)0.0150 (8)
H6O0.2019 (19)0.218 (3)0.268 (6)0.022*
O70.32391 (15)0.0490 (2)0.1104 (5)0.0153 (7)
H7O0.2861 (14)0.045 (4)0.162 (7)0.023*
O80.44941 (15)0.1051 (2)0.0634 (5)0.0140 (7)
H8O0.4886 (12)0.125 (3)0.071 (7)0.021*
N30.3796 (2)0.6259 (3)0.3853 (5)0.0119 (8)
H3A0.3444 (16)0.666 (3)0.360 (6)0.014*
H3B0.4158 (16)0.643 (4)0.314 (6)0.014*
H3C0.394 (2)0.631 (4)0.509 (3)0.014*
N40.35607 (18)0.5261 (3)0.3343 (5)0.0119 (8)
H4N0.3207 (15)0.531 (4)0.264 (6)0.014*
C80.4038 (2)0.4525 (3)0.2963 (6)0.0111 (10)
C90.3795 (2)0.3506 (3)0.2357 (6)0.0114 (9)
C100.3123 (2)0.3228 (3)0.2482 (6)0.0095 (9)
H100.28000.37170.28830.011*
C110.2938 (2)0.2221 (3)0.2007 (6)0.0104 (10)
C120.3409 (2)0.1510 (3)0.1452 (7)0.0110 (9)
C130.4064 (2)0.1793 (3)0.1252 (6)0.0119 (9)
C140.4260 (2)0.2797 (3)0.1712 (6)0.0122 (10)
H140.47130.29940.15830.015*
O90.59168 (16)0.4012 (2)0.2777 (5)0.0151 (8)
H9A0.596 (3)0.344 (2)0.334 (7)0.023*
H9B0.5591 (17)0.432 (3)0.325 (7)0.023*
Cl10.61543 (5)0.11830 (8)0.15644 (16)0.0126 (2)
O100.67545 (14)0.0734 (2)0.0667 (4)0.0114 (7)
O110.57866 (15)0.1783 (2)0.0090 (4)0.0131 (7)
O120.63558 (14)0.1903 (2)0.3124 (4)0.0103 (7)
O130.57257 (14)0.0391 (2)0.2378 (4)0.0116 (7)
U11U22U33U12U13U23
O10.0097 (15)0.0054 (14)0.0148 (16)−0.0020 (12)−0.0002 (14)0.0012 (13)
O20.0099 (15)0.0100 (14)0.0225 (16)−0.0009 (13)−0.0038 (17)0.0047 (16)
O30.0085 (16)0.0089 (15)0.0147 (17)−0.0007 (13)−0.0049 (14)0.0025 (13)
O40.0091 (16)0.0054 (15)0.0220 (16)−0.0008 (12)−0.0041 (14)0.0013 (14)
N10.0069 (17)0.0144 (18)0.007 (2)−0.0003 (15)−0.0011 (16)−0.0039 (17)
N20.0061 (18)0.0097 (18)0.020 (2)0.0008 (15)−0.0016 (17)−0.0005 (17)
C10.017 (2)0.009 (2)0.005 (2)0.0016 (18)0.003 (2)0.0009 (19)
C20.0069 (19)0.0091 (19)0.0063 (18)0.0001 (16)−0.001 (2)−0.004 (2)
C30.016 (2)0.010 (2)0.007 (2)0.0042 (17)−0.002 (2)−0.0006 (19)
C40.007 (2)0.008 (2)0.011 (2)−0.0006 (17)0.002 (2)−0.0016 (19)
C50.008 (2)0.014 (2)0.007 (2)−0.0008 (18)0.0025 (19)−0.0014 (19)
C60.018 (2)0.0026 (19)0.008 (2)0.0024 (18)−0.0033 (19)0.0021 (17)
C70.016 (2)0.0049 (18)0.009 (2)−0.0022 (18)−0.0016 (19)−0.0014 (17)
O50.0089 (17)0.0131 (15)0.0209 (18)0.0001 (13)0.0026 (14)0.0016 (14)
O60.0079 (17)0.0131 (16)0.024 (2)0.0022 (13)0.0060 (14)−0.0018 (14)
O70.0101 (16)0.0121 (15)0.024 (2)0.0006 (13)0.0031 (15)−0.0022 (14)
O80.0095 (16)0.0114 (16)0.0211 (17)0.0021 (13)−0.0007 (14)−0.0036 (14)
N30.011 (2)0.011 (2)0.014 (2)0.0029 (18)−0.0010 (18)−0.0016 (18)
N40.0106 (19)0.0060 (17)0.019 (2)0.0033 (16)−0.0024 (17)−0.0059 (17)
C80.012 (2)0.018 (2)0.003 (2)0.0012 (19)−0.0009 (18)0.0013 (19)
C90.017 (3)0.0084 (19)0.0084 (19)0.0011 (19)−0.003 (2)0.0002 (17)
C100.014 (2)0.005 (2)0.009 (2)0.0044 (18)0.003 (2)0.0011 (18)
C110.009 (2)0.016 (2)0.006 (2)0.0005 (19)0.0024 (17)0.0025 (18)
C120.014 (2)0.0065 (19)0.013 (2)0.0022 (17)−0.005 (2)−0.001 (2)
C130.013 (2)0.012 (2)0.011 (2)0.0060 (18)−0.0003 (19)−0.005 (2)
C140.013 (2)0.016 (2)0.008 (2)−0.0017 (18)0.000 (2)0.001 (2)
O90.0136 (18)0.0108 (17)0.0209 (19)0.0038 (14)0.0024 (15)0.0002 (14)
Cl10.0136 (5)0.0122 (5)0.0120 (5)−0.0006 (5)0.0010 (5)0.0001 (5)
O100.0094 (16)0.0089 (15)0.0158 (15)0.0011 (13)0.0038 (14)0.0029 (13)
O110.0144 (17)0.0134 (16)0.0114 (15)0.0056 (14)−0.0025 (14)0.0017 (13)
O120.0122 (16)0.0094 (15)0.0095 (15)−0.0040 (13)0.0011 (13)−0.0020 (13)
O130.0110 (16)0.0074 (14)0.0164 (16)−0.0070 (13)0.0039 (14)−0.0035 (13)
O1—C11.227 (5)O7—H7O0.843 (19)
O2—C41.372 (5)O8—C131.362 (5)
O2—H2O0.826 (19)O8—H8O0.830 (19)
O3—C51.384 (5)N3—N41.420 (5)
O3—H3O0.82 (2)N3—H3A0.892 (19)
O4—C61.376 (5)N3—H3B0.911 (19)
O4—H4O0.839 (19)N3—H3C0.919 (19)
N1—N21.420 (5)N4—C81.377 (6)
N1—H1A0.880 (19)N4—H4N0.867 (19)
N1—H1B0.891 (19)C8—C91.467 (6)
N2—C11.358 (5)C9—C141.385 (6)
N2—H2N0.863 (19)C9—C101.402 (6)
C1—C21.488 (6)C10—C111.393 (6)
C2—C31.381 (6)C10—H100.9500
C2—C71.401 (6)C11—C121.376 (6)
C3—C41.384 (6)C12—C131.375 (6)
C3—H30.9500C13—C141.393 (6)
C4—C51.389 (6)C14—H140.9500
C5—C61.382 (6)O9—H9A0.85 (2)
C6—C71.379 (6)O9—H9B0.83 (2)
C7—H70.9500Cl1—O131.455 (3)
O5—C81.226 (5)Cl1—O101.480 (3)
O6—C111.368 (5)Cl1—O111.489 (3)
O6—H6O0.82 (2)Cl1—O121.492 (3)
O7—C121.382 (5)
C4—O2—H2O105 (3)H3A—N3—H3B113 (4)
C5—O3—H3O115 (3)N4—N3—H3C114 (3)
C6—O4—H4O112 (3)H3A—N3—H3C113 (4)
N2—N1—H1A117 (3)H3B—N3—H3C104 (4)
N2—N1—H1B104 (3)C8—N4—N3116.3 (4)
H1A—N1—H1B107 (4)C8—N4—H4N121 (3)
C1—N2—N1116.8 (3)N3—N4—H4N110 (3)
C1—N2—H2N124 (3)O5—C8—N4118.3 (4)
N1—N2—H2N115 (3)O5—C8—C9125.2 (4)
O1—C1—N2120.9 (4)N4—C8—C9116.3 (4)
O1—C1—C2124.5 (3)C14—C9—C10120.1 (4)
N2—C1—C2114.6 (4)C14—C9—C8117.6 (4)
C3—C2—C7119.8 (4)C10—C9—C8122.2 (4)
C3—C2—C1121.2 (4)C11—C10—C9118.9 (4)
C7—C2—C1119.0 (4)C11—C10—H10120.6
C2—C3—C4120.4 (4)C9—C10—H10120.6
C2—C3—H3119.8O6—C11—C12114.9 (4)
C4—C3—H3119.8O6—C11—C10124.6 (4)
O2—C4—C3120.8 (4)C12—C11—C10120.4 (4)
O2—C4—C5119.5 (4)C13—C12—C11120.7 (4)
C3—C4—C5119.8 (4)C13—C12—O7118.2 (4)
C6—C5—O3121.8 (4)C11—C12—O7121.1 (4)
C6—C5—C4119.8 (4)O8—C13—C12117.0 (4)
O3—C5—C4118.4 (4)O8—C13—C14123.2 (4)
O4—C6—C7122.5 (4)C12—C13—C14119.7 (4)
O4—C6—C5116.7 (4)C9—C14—C13120.0 (4)
C7—C6—C5120.8 (4)C9—C14—H14120.0
C6—C7—C2119.3 (4)C13—C14—H14120.0
C6—C7—H7120.3H9A—O9—H9B108 (5)
C2—C7—H7120.3O13—Cl1—O10112.02 (17)
C11—O6—H6O119 (3)O13—Cl1—O11110.14 (18)
C12—O7—H7O102 (3)O10—Cl1—O11108.30 (18)
C13—O8—H8O111 (3)O13—Cl1—O12108.18 (18)
N4—N3—H3A102 (3)O10—Cl1—O12109.52 (18)
N4—N3—H3B110 (3)O11—Cl1—O12108.63 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O12i0.88 (2)1.95 (3)2.769 (5)155 (4)
N1—H1B···O11ii0.89 (2)1.99 (3)2.835 (5)159 (4)
N2—H2N···O13iii0.86 (2)1.92 (2)2.783 (4)175 (4)
O2—H2O···O10iii0.83 (2)1.96 (2)2.782 (4)173 (5)
N3—H3A···O3iv0.89 (2)2.10 (2)2.958 (5)161 (4)
N3—H3B···O10.91 (2)1.90 (2)2.788 (5)163 (4)
N3—H3C···O9ii0.92 (2)1.95 (2)2.833 (5)160 (4)
O3—H3O···O40.82 (2)2.39 (5)2.732 (4)106 (4)
O3—H3O···O10v0.82 (2)1.96 (3)2.720 (4)153 (4)
N4—H4N···O2iv0.87 (2)2.01 (3)2.811 (5)154 (4)
O4—H4O···O90.84 (2)2.02 (2)2.854 (4)171 (5)
O6—H6O···O12vi0.82 (2)1.81 (3)2.598 (4)160 (5)
O7—H7O···O60.84 (2)2.15 (4)2.667 (4)119 (4)
O7—H7O···O4vi0.84 (2)2.31 (3)3.085 (4)154 (4)
O8—H8O···O110.83 (2)1.99 (2)2.794 (4)164 (5)
O8—H8O···O130.83 (2)2.34 (4)2.892 (4)125 (4)
O9—H9A···O120.85 (2)2.14 (3)2.875 (4)145 (5)
O9—H9A···O1ii0.85 (2)2.51 (5)3.036 (4)121 (4)
O9—H9B···O50.83 (2)2.03 (3)2.794 (4)152 (5)
C3—H3···O13iii0.952.393.079 (5)129.
C7—H7···O90.952.573.291 (5)133.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O12i0.88 (2)1.95 (3)2.769 (5)155 (4)
N1—H1B⋯O11ii0.89 (2)1.99 (3)2.835 (5)159 (4)
N2—H2N⋯O13iii0.86 (2)1.92 (2)2.783 (4)175 (4)
O2—H2O⋯O10iii0.83 (2)1.96 (2)2.782 (4)173 (5)
N3—H3A⋯O3iv0.89 (2)2.10 (2)2.958 (5)161 (4)
N3—H3B⋯O10.91 (2)1.90 (2)2.788 (5)163 (4)
N3—H3C⋯O9ii0.92 (2)1.95 (2)2.833 (5)160 (4)
O3—H3O⋯O40.82 (2)2.39 (5)2.732 (4)106 (4)
O3—H3O⋯O10v0.82 (2)1.96 (3)2.720 (4)153 (4)
N4—H4N⋯O2iv0.87 (2)2.01 (3)2.811 (5)154 (4)
O4—H4O⋯O90.84 (2)2.02 (2)2.854 (4)171 (5)
O6—H6O⋯O12vi0.82 (2)1.81 (3)2.598 (4)160 (5)
O7—H7O⋯O60.84 (2)2.15 (4)2.667 (4)119 (4)
O7—H7O⋯O4vi0.84 (2)2.31 (3)3.085 (4)154 (4)
O8—H8O⋯O110.83 (2)1.99 (2)2.794 (4)164 (5)
O8—H8O⋯O130.83 (2)2.34 (4)2.892 (4)125 (4)
O9—H9A⋯O120.85 (2)2.14 (3)2.875 (4)145 (5)
O9—H9A⋯O1ii0.85 (2)2.51 (5)3.036 (4)121 (4)
O9—H9B⋯O50.83 (2)2.03 (3)2.794 (4)152 (5)
C3—H3⋯O13iii0.952.393.079 (5)129
C7—H7⋯O90.952.573.291 (5)133

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3,4,5-Trimethoxy-benzohydrazidium chloride.

Authors:  Aamer Saeed; Amara Mumtaz; Hummera Rafique; Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13
  2 in total

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