Literature DB >> 22058855

Bis{4-chloro-2-[(2-hy-droxy-eth-yl)imino-meth-yl]phenolato}nickel(II) monohydrate.

Chen-Yi Wang1, Jin-Yun Ye, Xiang Wu, Zhi-Ping Han.   

Abstract

The title mononuclear nickel(II) complex, [Ni(C(9)H(9)ClNO(2))(2)]·H(2)O, was obtained by the reaction of 5-chloro-salicyl-aldehyde, 2-amino-ethanol and nickel nitrate in methanol. The Ni atom is six-coordinated by two phenolate O, two imine N and two hy-droxy O atoms from two crystallographically different Schiff base ligands, forming an octa-hedral geometry. In the crystal, mol-ecules are linked through inter-molecular O-H⋯O and O-H⋯Cl hydrogen bonds.

Entities:  

Year:  2011        PMID: 22058855      PMCID: PMC3200802          DOI: 10.1107/S1600536811031680

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our investigations of urease inhibitors, see: Wang (2009 ▶); Wang & Ye (2011 ▶). For similar nickel(II) complexes, see: Arıcı et al. (2005 ▶); Liu et al. (2006 ▶); Li & Wang (2007 ▶); Ali et al. (2006 ▶).

Experimental

Crystal data

[Ni(C9H9ClNO2)2]·H2O M = 473.97 Orthorhombic, a = 9.846 (1) Å b = 12.646 (2) Å c = 16.006 (2) Å V = 1992.9 (4) Å3 Z = 4 Mo Kα radiation μ = 1.27 mm−1 T = 298 K 0.30 × 0.27 × 0.27 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.701, T max = 0.725 11691 measured reflections 4328 independent reflections 3147 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.076 S = 1.04 4328 reflections 265 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.39 e Å−3 Absolute structure: Flack (1983 ▶), 1855 Friedel pairs Flack parameter: 0.015 (15) Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031680/om2456sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031680/om2456Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C9H9ClNO2)2]·H2ODx = 1.580 Mg m3
Mr = 473.97Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 2792 reflections
a = 9.846 (1) Åθ = 2.4–24.5°
b = 12.646 (2) ŵ = 1.27 mm1
c = 16.006 (2) ÅT = 298 K
V = 1992.9 (4) Å3Block, green
Z = 40.30 × 0.27 × 0.27 mm
F(000) = 976
Bruker SMART CCD area-detector diffractometer4328 independent reflections
Radiation source: fine-focus sealed tube3147 reflections with I > 2σ(I)
graphiteRint = 0.048
ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.701, Tmax = 0.725k = −14→16
11691 measured reflectionsl = −20→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0206P)2 + 0.1322P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4328 reflectionsΔρmax = 0.35 e Å3
265 parametersΔρmin = −0.39 e Å3
5 restraintsAbsolute structure: Flack (1983), 1855 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.015 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.53364 (4)0.24034 (3)0.09823 (3)0.03031 (12)
Cl1−0.07950 (10)−0.02347 (9)0.24602 (7)0.0569 (3)
Cl20.4617 (2)0.80769 (9)0.02875 (10)0.1053 (6)
N10.4422 (3)0.1170 (2)0.04386 (17)0.0293 (7)
N20.6463 (3)0.3534 (2)0.15079 (19)0.0331 (7)
O10.3912 (2)0.2511 (2)0.18821 (14)0.0396 (6)
O20.6727 (2)0.21542 (19)−0.00183 (15)0.0351 (6)
H20.7545 (17)0.195 (3)0.000 (3)0.080*
O30.4326 (2)0.34479 (18)0.02676 (15)0.0353 (6)
O40.6595 (3)0.1451 (2)0.17926 (17)0.0427 (7)
H40.634 (4)0.0850 (18)0.198 (3)0.080*
O50.5861 (4)0.9351 (2)0.2104 (2)0.0666 (9)
H5A0.575 (5)0.905 (3)0.1640 (12)0.080*
H5B0.601 (4)0.886 (2)0.2461 (17)0.080*
C10.2544 (3)0.1029 (3)0.1421 (2)0.0285 (8)
C20.2870 (3)0.1881 (3)0.1969 (2)0.0312 (9)
C30.1979 (3)0.2045 (3)0.2648 (2)0.0369 (9)
H30.21540.26020.30120.044*
C40.0863 (4)0.1416 (3)0.2794 (2)0.0385 (9)
H4A0.03020.15470.32500.046*
C50.0581 (3)0.0591 (3)0.2259 (2)0.0377 (10)
C60.1391 (3)0.0405 (3)0.1584 (2)0.0353 (9)
H60.1177−0.01470.12230.042*
C70.3306 (3)0.0749 (3)0.0684 (2)0.0317 (9)
H70.29530.02100.03540.038*
C80.5114 (3)0.0774 (3)−0.0304 (2)0.0376 (9)
H8A0.44490.0547−0.07140.045*
H8B0.56710.0170−0.01570.045*
C90.6000 (4)0.1642 (3)−0.0674 (2)0.0409 (10)
H9A0.66340.1339−0.10710.049*
H9B0.54380.2152−0.09660.049*
C100.5384 (4)0.5021 (3)0.0821 (2)0.0361 (9)
C110.4462 (3)0.4476 (3)0.0297 (2)0.0322 (9)
C120.3640 (4)0.5102 (3)−0.0228 (2)0.0398 (10)
H120.30430.4765−0.05920.048*
C130.3680 (4)0.6183 (3)−0.0226 (3)0.0486 (11)
H130.31140.6569−0.05780.058*
C140.4562 (6)0.6693 (3)0.0297 (3)0.0550 (12)
C150.5406 (4)0.6136 (3)0.0800 (2)0.0512 (11)
H150.60140.64980.11410.061*
C160.6327 (4)0.4522 (3)0.1399 (2)0.0395 (10)
H160.68770.49660.17150.047*
C170.7482 (4)0.3129 (3)0.2095 (3)0.0476 (12)
H17A0.76420.36450.25320.057*
H17B0.83310.30060.18040.057*
C180.6985 (4)0.2117 (3)0.2472 (3)0.0497 (11)
H18A0.76990.17850.27970.060*
H18B0.62150.22500.28350.060*
U11U22U33U12U13U23
Ni10.02362 (18)0.0263 (2)0.0410 (3)−0.0021 (2)−0.0013 (2)−0.0026 (2)
Cl10.0378 (6)0.0680 (7)0.0648 (8)−0.0153 (5)0.0081 (6)0.0168 (6)
Cl20.1734 (16)0.0291 (6)0.1135 (12)−0.0054 (9)−0.0607 (13)0.0109 (6)
N10.0269 (17)0.0244 (15)0.0367 (18)0.0013 (13)0.0017 (14)−0.0003 (14)
N20.0255 (16)0.0317 (18)0.042 (2)−0.0035 (14)−0.0052 (14)0.0019 (15)
O10.0363 (12)0.0363 (14)0.0463 (15)−0.0070 (13)0.0054 (11)−0.0114 (15)
O20.0233 (11)0.0422 (16)0.0398 (15)−0.0034 (11)0.0018 (12)−0.0067 (12)
O30.0255 (14)0.0290 (13)0.0513 (17)−0.0018 (11)−0.0073 (12)−0.0043 (12)
O40.0506 (18)0.0326 (15)0.0449 (18)−0.0009 (14)−0.0107 (15)0.0006 (14)
O50.079 (2)0.0501 (19)0.071 (2)−0.0112 (18)−0.004 (2)0.0169 (16)
C10.0223 (17)0.028 (2)0.035 (2)−0.0022 (15)−0.0032 (16)0.0050 (16)
C20.0274 (19)0.030 (2)0.036 (2)−0.0001 (16)−0.0022 (17)0.0039 (17)
C30.0323 (19)0.038 (2)0.041 (3)0.0041 (16)−0.0019 (18)−0.0024 (18)
C40.0312 (19)0.049 (2)0.035 (2)0.0061 (19)0.0062 (17)0.008 (2)
C50.024 (2)0.042 (2)0.047 (3)−0.0032 (17)−0.0015 (18)0.0138 (19)
C60.0302 (19)0.038 (2)0.037 (2)−0.0020 (17)−0.0038 (18)0.0033 (19)
C70.0293 (19)0.0265 (19)0.039 (2)−0.0040 (16)−0.0037 (17)0.0002 (16)
C80.033 (2)0.041 (2)0.039 (2)−0.0057 (17)0.0062 (17)−0.0090 (17)
C90.036 (2)0.047 (2)0.039 (2)−0.0118 (18)0.0011 (18)−0.0060 (19)
C100.0386 (19)0.0278 (18)0.042 (2)−0.0028 (18)−0.003 (2)0.0008 (16)
C110.026 (2)0.032 (2)0.039 (2)−0.0033 (16)0.0021 (17)−0.0031 (17)
C120.036 (2)0.037 (2)0.046 (3)−0.0033 (18)−0.0059 (18)0.003 (2)
C130.057 (3)0.040 (2)0.049 (3)0.005 (2)−0.010 (2)0.010 (2)
C140.086 (3)0.026 (2)0.053 (3)−0.003 (2)−0.006 (3)0.0055 (19)
C150.068 (3)0.033 (2)0.053 (3)−0.009 (2)−0.016 (3)−0.0025 (19)
C160.034 (2)0.031 (2)0.054 (3)−0.0088 (17)−0.0082 (18)−0.0051 (19)
C170.039 (2)0.043 (2)0.060 (3)−0.006 (2)−0.021 (2)−0.005 (2)
C180.052 (2)0.043 (3)0.055 (3)0.0039 (19)−0.019 (2)0.002 (2)
Ni1—N21.996 (3)C4—C51.377 (5)
Ni1—N12.000 (3)C4—H4A0.9300
Ni1—O32.011 (2)C5—C61.363 (5)
Ni1—O12.015 (2)C6—H60.9300
Ni1—O22.131 (2)C7—H70.9300
Ni1—O42.160 (3)C8—C91.522 (5)
Cl1—C51.741 (3)C8—H8A0.9700
Cl2—C141.751 (4)C8—H8B0.9700
N1—C71.283 (4)C9—H9A0.9700
N1—C81.458 (4)C9—H9B0.9700
N2—C161.269 (4)C10—C151.410 (5)
N2—C171.467 (4)C10—C111.415 (5)
O1—C21.307 (4)C10—C161.454 (5)
O2—C91.425 (4)C11—C121.410 (5)
O2—H20.847 (10)C12—C131.368 (5)
O3—C111.308 (4)C12—H120.9300
O4—C181.428 (4)C13—C141.367 (5)
O4—H40.852 (10)C13—H130.9300
O5—H5B0.860 (10)C14—C151.355 (5)
O5—H5A0.844 (10)C15—H150.9300
C1—C61.407 (4)C16—H160.9300
C1—C21.426 (5)C17—C181.497 (5)
C1—C71.442 (5)C17—H17A0.9700
C2—C31.412 (5)C17—H17B0.9700
C3—C41.377 (5)C18—H18A0.9700
C3—H30.9300C18—H18B0.9700
N2—Ni1—N1172.89 (12)N1—C7—C1126.4 (3)
N2—Ni1—O392.54 (11)N1—C7—H7116.8
N1—Ni1—O392.40 (10)C1—C7—H7116.8
N2—Ni1—O192.13 (11)N1—C8—C9109.7 (3)
N1—Ni1—O192.89 (10)N1—C8—H8A109.7
O3—Ni1—O191.03 (10)C9—C8—H8A109.7
N2—Ni1—O293.76 (11)N1—C8—H8B109.7
N1—Ni1—O281.20 (10)C9—C8—H8B109.7
O3—Ni1—O289.28 (10)H8A—C8—H8B108.2
O1—Ni1—O2174.08 (10)O2—C9—C8109.2 (3)
N2—Ni1—O480.06 (11)O2—C9—H9A109.8
N1—Ni1—O494.87 (11)C8—C9—H9A109.8
O3—Ni1—O4172.50 (10)O2—C9—H9B109.8
O1—Ni1—O490.43 (10)C8—C9—H9B109.8
O2—Ni1—O490.02 (10)H9A—C9—H9B108.3
C7—N1—C8120.4 (3)C15—C10—C11118.9 (3)
C7—N1—Ni1125.2 (3)C15—C10—C16116.0 (3)
C8—N1—Ni1114.3 (2)C11—C10—C16125.1 (3)
C16—N2—C17120.3 (3)O3—C11—C12118.5 (3)
C16—N2—Ni1126.0 (3)O3—C11—C10124.8 (3)
C17—N2—Ni1113.6 (2)C12—C11—C10116.7 (3)
C2—O1—Ni1125.6 (2)C13—C12—C11122.9 (4)
C9—O2—Ni1107.31 (19)C13—C12—H12118.6
C9—O2—H2111 (3)C11—C12—H12118.6
Ni1—O2—H2129 (3)C14—C13—C12119.4 (4)
C11—O3—Ni1125.6 (2)C14—C13—H13120.3
C18—O4—Ni1106.4 (2)C12—C13—H13120.3
C18—O4—H4110 (3)C15—C14—C13120.6 (4)
Ni1—O4—H4123 (3)C15—C14—Cl2120.4 (4)
H5B—O5—H5A106 (2)C13—C14—Cl2119.0 (4)
C6—C1—C2119.4 (3)C14—C15—C10121.6 (4)
C6—C1—C7115.7 (3)C14—C15—H15119.2
C2—C1—C7124.9 (3)C10—C15—H15119.2
O1—C2—C3118.7 (3)N2—C16—C10125.6 (3)
O1—C2—C1124.9 (3)N2—C16—H16117.2
C3—C2—C1116.4 (3)C10—C16—H16117.2
C4—C3—C2122.8 (3)N2—C17—C18109.5 (3)
C4—C3—H3118.6N2—C17—H17A109.8
C2—C3—H3118.6C18—C17—H17A109.8
C3—C4—C5119.5 (4)N2—C17—H17B109.8
C3—C4—H4A120.2C18—C17—H17B109.8
C5—C4—H4A120.2H17A—C17—H17B108.2
C6—C5—C4120.4 (3)O4—C18—C17106.6 (3)
C6—C5—Cl1119.9 (3)O4—C18—H18A110.4
C4—C5—Cl1119.8 (3)C17—C18—H18A110.4
C5—C6—C1121.5 (3)O4—C18—H18B110.4
C5—C6—H6119.3C17—C18—H18B110.4
C1—C6—H6119.3H18A—C18—H18B108.6
D—H···AD—HH···AD···AD—H···A
O5—H5B···O1i0.86 (1)2.00 (2)2.846 (4)167 (4)
O4—H4···O5ii0.85 (1)1.97 (2)2.798 (4)165 (4)
O2—H2···O3iii0.85 (1)1.87 (2)2.699 (3)165 (4)
O5—H5A···Cl20.84 (1)2.73 (2)3.542 (4)163 (4)
Table 1

Selected bond lengths (Å)

Ni1—N21.996 (3)
Ni1—N12.000 (3)
Ni1—O32.011 (2)
Ni1—O12.015 (2)
Ni1—O22.131 (2)
Ni1—O42.160 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5B⋯O1i0.86 (1)2.00 (2)2.846 (4)167 (4)
O4—H4⋯O5ii0.85 (1)1.97 (2)2.798 (4)165 (4)
O2—H2⋯O3iii0.85 (1)1.87 (2)2.699 (3)165 (4)
O5—H5A⋯Cl20.84 (1)2.73 (2)3.542 (4)163 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  A bis-chelate o-vanillin-2-ethano-lamine copper(II) complex bearing both imine and amine forms of the ligand.

Authors:  Nataliya Plyuta; Vladimir N Kokozay; Julia A Rusanova; Halyna Buvailo; Evgeny Goreshnik; Svitlana Petrusenko
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-11-09
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.