Literature DB >> 22058852

Poly[di-μ-glycinato-copper(II)]: a two-dimensional coordination polymer.

Fabienne Gschwind1, Martin Jansen.   

Abstract

The title coordination polymer, [Cu(C(2)H(4)NO(2))(2)](n), is two-dimensional and consists of a distorted octa-hedral copper coordination polyhedron with two bidentate glycine ligands chelating the metal through the O and N atoms in a trans-square-planar configuration. The two axial coordination sites are occupied by carbonyl O atoms of neighbouring glycine mol-ecules. The Cu-O distances for the axial O atoms [2.648 (2) and 2.837 (2) Å] are considerably longer than both the Cu-O [1.9475 (17) and 1.9483 (18) Å] and Cu-N [1.988 (2) and 1.948 (2) Å] distances in the equatorial plane, which indicates a strong Jahn-Teller effect. In the crystal, the two-dimensional networks are arranged parallel to (001) and are linked via N-H⋯O hydrogen bonds, forming a three-dimensional arrangement.

Entities:  

Year:  2011        PMID: 22058852      PMCID: PMC3200596          DOI: 10.1107/S1600536811031503

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the first work on cadmium glycinato complexes, see: Low et al. (1959 ▶). For similar mixed-metal glycinato complexes with copper(II), see: Papavinasam (1991 ▶); Davies et al. (2003 ▶); Low et al. (1959 ▶); Bi et al. (2006 ▶); Zhang et al. (2005 ▶). For further studies on cadmium–glycinato complexes, see: Barrie et al. (1993 ▶). For the properties and structure of a three-dimensional copper–glycinate polymer, see: Chen et al. (2009 ▶). For the synthesis of [NaCu6(gly)3(ClO4)3(H2O)](ClO4)2, see: Aromi et al. (2008 ▶).

Experimental

Crystal data

[Cu(C2H4NO2)2] M = 211.66 Monoclinic, a = 9.4265 (19) Å b = 5.1159 (10) Å c = 13.912 (3) Å β = 107.36 (3)° V = 640.4 (2) Å3 Z = 4 Mo Kα radiation μ = 3.37 mm−1 T = 298 K 0.21 × 0.15 × 0.09 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-SHAPE and X-RED; Stoe & Cie, 2009 ▶) T min = 0.549, T max = 0.692 9012 measured reflections 1876 independent reflections 1561 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.075 S = 1.03 1876 reflections 116 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.58 e Å−3 Data collection: X-AREA (Stoe & Cie, 2009 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811031503/su2280sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031503/su2280Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C2H4NO2)2]F(000) = 428
Mr = 211.66Dx = 2.195 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5867 reflections
a = 9.4265 (19) Åθ = 2.3–30.5°
b = 5.1159 (10) ŵ = 3.37 mm1
c = 13.912 (3) ÅT = 298 K
β = 107.36 (3)°Block, blue
V = 640.4 (2) Å30.21 × 0.15 × 0.09 mm
Z = 4
Stoe IPDS 2 diffractometer1876 independent reflections
Radiation source: fine-focus sealed tube1561 reflections with I > 2σ(I)
graphiteRint = 0.048
Detector resolution: 6.67 pixels mm-1θmax = 30.0°, θmin = 2.3°
rotation method scansh = −13→13
Absorption correction: integration (X-SHAPE and X-RED; Stoe & Cie, 2009)k = −7→6
Tmin = 0.549, Tmax = 0.692l = −19→17
9012 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0447P)2] where P = (Fo2 + 2Fc2)/3
1876 reflections(Δ/σ)max = 0.001
116 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.58 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu1−0.00228 (3)0.02678 (5)0.26465 (2)0.0301 (1)
O1−0.17587 (17)−0.1989 (3)0.21922 (12)0.0270 (4)
O2−0.3924 (2)−0.2410 (4)0.10081 (14)0.0408 (6)
O30.17471 (18)0.2461 (3)0.30307 (13)0.0317 (4)
O40.41730 (18)0.2283 (4)0.38098 (15)0.0392 (5)
N1−0.1151 (2)0.2642 (4)0.15535 (16)0.0283 (5)
N20.1137 (2)−0.2140 (4)0.37098 (17)0.0302 (6)
C1−0.2742 (2)−0.1247 (4)0.13882 (17)0.0260 (6)
C2−0.2384 (3)0.1181 (4)0.08778 (17)0.0304 (6)
C30.2916 (2)0.1351 (4)0.36051 (16)0.0253 (5)
C40.2694 (2)−0.1268 (4)0.40529 (17)0.0282 (6)
H1A0.112 (5)−0.378 (10)0.340 (3)0.076 (13)*
H1B0.082 (4)−0.233 (7)0.418 (3)0.045 (9)*
H2A−0.212400.067700.027900.0360*
H2B−0.325600.229300.067000.0360*
H3A−0.153 (4)0.393 (7)0.184 (2)0.045 (9)*
H3B−0.061 (4)0.342 (8)0.124 (3)0.061 (11)*
H4A0.33140−0.256700.386700.0340*
H4B0.30110−0.113000.478100.0340*
U11U22U33U12U13U23
Cu10.0249 (1)0.0214 (1)0.0380 (2)−0.0026 (1)−0.0001 (1)0.0078 (1)
O10.0262 (7)0.0191 (7)0.0334 (8)−0.0016 (5)0.0052 (6)0.0030 (6)
O20.0375 (9)0.0391 (10)0.0389 (10)−0.0142 (7)0.0010 (7)0.0043 (7)
O30.0277 (7)0.0216 (7)0.0408 (9)−0.0028 (6)0.0028 (6)0.0046 (6)
O40.0275 (8)0.0350 (9)0.0510 (11)−0.0060 (7)0.0057 (7)0.0016 (8)
N10.0274 (9)0.0214 (8)0.0340 (10)−0.0019 (7)0.0062 (7)0.0055 (7)
N20.0291 (9)0.0253 (9)0.0331 (11)−0.0023 (7)0.0046 (8)0.0068 (8)
C10.0282 (10)0.0234 (9)0.0262 (10)−0.0011 (7)0.0080 (8)−0.0020 (8)
C20.0351 (11)0.0263 (10)0.0264 (11)−0.0053 (8)0.0041 (8)0.0017 (8)
C30.0267 (9)0.0238 (9)0.0246 (10)−0.0018 (7)0.0066 (8)−0.0025 (7)
C40.0279 (10)0.0272 (10)0.0272 (11)0.0017 (8)0.0049 (8)0.0043 (8)
Cu1—O11.9475 (17)N2—C41.471 (3)
Cu1—O31.9483 (18)N1—H3B0.86 (4)
Cu1—N11.988 (2)N1—H3A0.90 (4)
Cu1—N21.984 (2)N2—H1A0.94 (5)
Cu1—O2i2.648 (2)N2—H1B0.80 (4)
Cu1—O4ii2.837 (2)C1—C21.518 (3)
O1—C11.279 (3)C3—C41.518 (3)
O2—C11.234 (3)C2—H2A0.9700
O3—C31.284 (3)C2—H2B0.9700
O4—C31.229 (3)C4—H4A0.9700
N1—C21.463 (3)C4—H4B0.9700
O1—Cu1—O3176.59 (8)H3A—N1—H3B105 (4)
O1—Cu1—N184.73 (8)C4—N2—H1A107 (3)
O1—Cu1—N295.55 (8)Cu1—N2—H1A106 (3)
O1—Cu1—O2i92.26 (7)Cu1—N2—H1B115 (3)
O1—Cu1—O4ii80.68 (7)C4—N2—H1B111 (3)
O3—Cu1—N194.41 (8)H1A—N2—H1B108 (4)
O3—Cu1—N285.22 (8)O2—C1—C2119.5 (2)
O2i—Cu1—O391.07 (7)O1—C1—O2123.9 (2)
O3—Cu1—O4ii96.01 (7)O1—C1—C2116.60 (19)
N1—Cu1—N2178.27 (9)N1—C2—C1111.24 (19)
O2i—Cu1—N192.22 (8)O3—C3—O4124.2 (2)
O4ii—Cu1—N189.04 (8)O3—C3—C4116.60 (18)
O2i—Cu1—N289.48 (8)O4—C3—C4119.3 (2)
O4ii—Cu1—N289.32 (8)N2—C4—C3112.39 (18)
O2i—Cu1—O4ii172.69 (7)N1—C2—H2A109.00
Cu1—O1—C1115.30 (14)N1—C2—H2B109.00
Cu1iii—O2—C1113.23 (15)C1—C2—H2A109.00
Cu1—O3—C3114.93 (14)C1—C2—H2B109.00
Cu1iv—O4—C3120.10 (16)H2A—C2—H2B108.00
Cu1—N1—C2108.68 (14)N2—C4—H4A109.00
Cu1—N2—C4109.16 (15)N2—C4—H4B109.00
C2—N1—H3A108 (2)C3—C4—H4A109.00
Cu1—N1—H3A107.6 (18)C3—C4—H4B109.00
Cu1—N1—H3B114 (3)H4A—C4—H4B108.00
C2—N1—H3B113 (3)
N1—Cu1—O1—C16.99 (16)N2—Cu1—O2i—C1i−157.43 (17)
N2—Cu1—O1—C1−171.29 (16)O1—Cu1—O4ii—C3ii−133.24 (18)
O2i—Cu1—O1—C199.01 (15)O3—Cu1—O4ii—C3ii47.61 (18)
O4ii—Cu1—O1—C1−82.90 (15)N1—Cu1—O4ii—C3ii141.95 (18)
N1—Cu1—O3—C3−166.00 (16)N2—Cu1—O4ii—C3ii−37.51 (18)
N2—Cu1—O3—C312.30 (16)Cu1—O1—C1—O2−178.31 (18)
O2i—Cu1—O3—C3101.69 (16)Cu1—O1—C1—C23.1 (2)
O4ii—Cu1—O3—C3−76.51 (16)Cu1iii—O2—C1—O132.3 (3)
O1—Cu1—N1—C2−14.98 (16)Cu1iii—O2—C1—C2−149.11 (17)
O3—Cu1—N1—C2161.71 (16)Cu1—O3—C3—O4169.39 (19)
O2i—Cu1—N1—C2−107.04 (16)Cu1—O3—C3—C4−11.0 (2)
O4ii—Cu1—N1—C265.75 (16)Cu1iv—O4—C3—O3−34.4 (3)
O1—Cu1—N2—C4166.43 (15)Cu1iv—O4—C3—C4146.03 (16)
O3—Cu1—N2—C4−10.23 (15)Cu1—N1—C2—C119.8 (2)
O2i—Cu1—N2—C4−101.35 (15)Cu1—N2—C4—C37.4 (2)
O4ii—Cu1—N2—C485.86 (15)O1—C1—C2—N1−15.8 (3)
O1—Cu1—O2i—C1i−61.90 (17)O2—C1—C2—N1165.5 (2)
O3—Cu1—O2i—C1i117.36 (17)O3—C3—C4—N22.1 (3)
N1—Cu1—O2i—C1i22.91 (17)O4—C3—C4—N2−178.3 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1A···O3v0.94 (5)2.12 (5)3.029 (3)162 (4)
N2—H1B···O2vi0.80 (4)2.49 (4)3.223 (3)154 (4)
N1—H3A···O1vii0.90 (4)2.17 (4)2.994 (3)152 (3)
N1—H3A···O1i0.90 (4)2.44 (4)3.003 (3)121 (3)
N1—H3B···O4iv0.86 (4)2.41 (4)3.152 (3)145 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1A⋯O3i0.94 (5)2.12 (5)3.029 (3)162 (4)
N2—H1B⋯O2ii0.80 (4)2.49 (4)3.223 (3)154 (4)
N1—H3A⋯O1iii0.90 (4)2.17 (4)2.994 (3)152 (3)
N1—H3A⋯O1iv0.90 (4)2.44 (4)3.003 (3)121 (3)
N1—H3B⋯O4v0.86 (4)2.41 (4)3.152 (3)145 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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