Literature DB >> 22058846

Bis[2-(2-amino-ethyl-amino)-ethanol]copper(II) dinitrate.

Reza Azadbakht, Hadi Amiri Rudbari, Giuseppe Bruno.   

Abstract

In the title compound, [Cu(C(4)H(12)N(2)O)(2)](NO(3))(2), the central Cu(II) atom has a distorted octa-hedral coordination geometry and is surrounded by four N atoms and two O atoms from the two inversion-related 2-(2-amino-ethyl-amino)-ethanol ligands. In the crystal, mol-ecules are held together by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds, leading to the formation of a three-dimensional network.

Entities:  

Year:  2011        PMID: 22058846      PMCID: PMC3200608          DOI: 10.1107/S1600536811030637

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures of related complexes, see: Qu et al. (2004 ▶); Uçar & Bulut (2005 ▶); Chastain & Dominick (1973 ▶).

Experimental

Crystal data

[Cu(C4H12N2O)2](NO3)2 M = 395.87 Tetragonal, a = 14.6640 (1) Å c = 29.8298 (7) Å V = 6414.39 (16) Å3 Z = 16 Mo Kα radiation μ = 1.41 mm−1 T = 296 K 0.45 × 0.36 × 0.23 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.532, T max = 0.741 224935 measured reflections 4172 independent reflections 3346 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.121 S = 1.04 4172 reflections 109 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.72 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030637/qm2020sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030637/qm2020Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C4H12N2O)2](NO3)2Dx = 1.640 Mg m3
Mr = 395.87Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/acdCell parameters from 9080 reflections
Hall symbol: -I 4bd 2cθ = 3.1–36.4°
a = 14.6640 (1) ŵ = 1.41 mm1
c = 29.8298 (7) ÅT = 296 K
V = 6414.39 (16) Å3Regular, pink
Z = 160.45 × 0.36 × 0.23 mm
F(000) = 3312
Bruker APEXII CCD diffractometer4172 independent reflections
Radiation source: fine-focus sealed tube3346 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 37.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −24→24
Tmin = 0.532, Tmax = 0.741k = −24→24
224935 measured reflectionsl = −50→50
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0796P)2 + 2.0215P] where P = (Fo2 + 2Fc2)/3
4172 reflections(Δ/σ)max = 0.001
109 parametersΔρmax = 0.67 e Å3
0 restraintsΔρmin = −0.72 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu0.75000.309239 (12)0.00000.02305 (7)
O10.61649 (7)0.29396 (8)−0.02849 (4)0.0422 (2)
H10.56400.3209−0.01700.051*
O20.77057 (12)0.25081 (15)0.19377 (6)0.0770 (5)
O30.71878 (11)0.38235 (9)0.21338 (6)0.0619 (4)
O40.62849 (9)0.26916 (9)0.20917 (4)0.0566 (3)
N10.71690 (7)0.21768 (7)0.05303 (3)0.02816 (17)
N20.79384 (7)0.40760 (7)−0.04633 (4)0.03194 (19)
H2A0.75560.4556−0.04600.038*
H2B0.84990.4275−0.03880.038*
N30.70700 (9)0.29975 (8)0.20544 (4)0.0358 (2)
C10.66926 (10)0.27016 (10)0.08834 (4)0.0377 (3)
H1A0.67790.24010.11700.045*
H1B0.60440.27100.08190.045*
C20.79595 (10)0.36737 (10)−0.09140 (5)0.0388 (3)
H2C0.83560.4029−0.11070.047*
H2D0.73520.3678−0.10420.047*
C30.61890 (9)0.23541 (11)−0.06844 (5)0.0411 (3)
H3A0.62310.2731−0.09510.049*
H3B0.56290.2004−0.07020.049*
C40.80093 (10)0.17140 (11)0.06673 (6)0.0441 (3)
H4A0.81400.12250.04580.053*
H4B0.79210.14440.09610.053*
H20.6816 (15)0.1700 (17)0.0429 (7)0.054 (6)*
U11U22U33U12U13U23
Cu0.01921 (9)0.02340 (9)0.02654 (10)0.0000.00019 (5)0.000
O10.0266 (4)0.0506 (5)0.0494 (6)0.0057 (4)−0.0040 (4)−0.0110 (5)
O20.0687 (9)0.0947 (13)0.0675 (9)0.0433 (9)−0.0148 (7)−0.0199 (9)
O30.0572 (7)0.0336 (5)0.0948 (11)−0.0136 (5)−0.0136 (7)0.0028 (6)
O40.0502 (6)0.0520 (7)0.0675 (7)−0.0214 (5)−0.0097 (5)0.0097 (6)
N10.0238 (3)0.0278 (4)0.0328 (4)−0.0029 (3)0.0010 (3)0.0025 (3)
N20.0318 (4)0.0264 (4)0.0376 (5)−0.0005 (3)0.0019 (4)0.0050 (3)
N30.0378 (5)0.0323 (5)0.0374 (5)−0.0004 (4)−0.0086 (4)0.0040 (4)
C10.0393 (6)0.0418 (7)0.0321 (5)−0.0039 (5)0.0098 (4)0.0012 (5)
C20.0428 (6)0.0409 (6)0.0326 (5)−0.0011 (5)0.0032 (5)0.0098 (5)
C30.0274 (5)0.0523 (8)0.0435 (6)−0.0019 (5)−0.0058 (4)−0.0132 (6)
C40.0338 (6)0.0386 (7)0.0598 (9)0.0033 (5)0.0007 (6)0.0213 (6)
Cu—N22.0984 (10)N2—H2A0.9000
Cu—N2i2.0984 (10)N2—H2B0.9000
Cu—N1i2.1308 (10)C1—C2i1.517 (2)
Cu—N12.1308 (10)C1—H1A0.9700
Cu—O12.1460 (10)C1—H1B0.9700
Cu—O1i2.1460 (10)C2—C1i1.517 (2)
O1—C31.4693 (17)C2—H2C0.9700
O1—H10.9300C2—H2D0.9700
O2—N31.2269 (19)C3—C4i1.505 (2)
O3—N31.2462 (16)C3—H3A0.9700
O4—N31.2406 (17)C3—H3B0.9700
N1—C41.4649 (17)C4—C3i1.505 (2)
N1—C11.4798 (17)C4—H4A0.9700
N1—H20.92 (2)C4—H4B0.9700
N2—C21.4684 (18)
N2—Cu—N2i93.16 (6)H2A—N2—H2B108.2
N2—Cu—N1i82.79 (4)O2—N3—O4121.27 (17)
N2i—Cu—N1i172.64 (4)O2—N3—O3121.15 (17)
N2—Cu—N1172.64 (4)O4—N3—O3117.58 (15)
N2i—Cu—N182.79 (4)N1—C1—C2i111.89 (10)
N1i—Cu—N1101.88 (6)N1—C1—H1A109.2
N2—Cu—O195.19 (5)C2i—C1—H1A109.2
N2i—Cu—O193.04 (4)N1—C1—H1B109.2
N1i—Cu—O181.26 (4)C2i—C1—H1B109.2
N1—Cu—O191.17 (4)H1A—C1—H1B107.9
N2—Cu—O1i93.04 (4)N2—C2—C1i109.24 (10)
N2i—Cu—O1i95.19 (5)N2—C2—H2C109.8
N1i—Cu—O1i91.17 (4)C1i—C2—H2C109.8
N1—Cu—O1i81.26 (4)N2—C2—H2D109.8
O1—Cu—O1i168.02 (6)C1i—C2—H2D109.8
C3—O1—Cu111.12 (7)H2C—C2—H2D108.3
C3—O1—H1124.4O1—C3—C4i110.83 (11)
Cu—O1—H1124.4O1—C3—H3A109.5
C4—N1—C1116.07 (12)C4i—C3—H3A109.5
C4—N1—Cu107.91 (8)O1—C3—H3B109.5
C1—N1—Cu107.95 (8)C4i—C3—H3B109.5
C4—N1—H2102.3 (14)H3A—C3—H3B108.1
C1—N1—H2111.3 (14)N1—C4—C3i112.19 (11)
Cu—N1—H2111.2 (14)N1—C4—H4A109.2
C2—N2—Cu109.47 (8)C3i—C4—H4A109.2
C2—N2—H2A109.8N1—C4—H4B109.2
Cu—N2—H2A109.8C3i—C4—H4B109.2
C2—N2—H2B109.8H4A—C4—H4B107.9
Cu—N2—H2B109.8
N2—Cu—O1—C379.30 (10)O1i—Cu—N1—C1105.41 (9)
N2i—Cu—O1—C3172.76 (10)N2i—Cu—N2—C2−157.09 (10)
N1i—Cu—O1—C3−2.56 (10)N1i—Cu—N2—C216.74 (8)
N1—Cu—O1—C3−104.40 (10)O1—Cu—N2—C2−63.74 (9)
O1i—Cu—O1—C3−53.89 (10)O1i—Cu—N2—C2107.54 (9)
N2i—Cu—N1—C4−117.16 (10)C4—N1—C1—C2i88.06 (14)
N1i—Cu—N1—C468.61 (10)Cu—N1—C1—C2i−33.15 (13)
O1—Cu—N1—C4149.92 (10)Cu—N2—C2—C1i−38.94 (13)
O1i—Cu—N1—C4−20.75 (10)Cu—O1—C3—C4i25.17 (15)
N2i—Cu—N1—C19.00 (8)C1—N1—C4—C3i−79.92 (15)
N1i—Cu—N1—C1−165.23 (9)Cu—N1—C4—C3i41.32 (15)
O1—Cu—N1—C1−83.92 (8)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3ii0.902.142.9963 (17)159.
O1—H1···O4iii0.932.283.1256 (16)152.
N2—H2B···O4iv0.902.583.3356 (18)141.
N1—H2···O4v0.92 (2)2.49 (2)3.2449 (18)139.8 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O3i0.902.142.9963 (17)159
O1—H1⋯O4ii0.932.283.1256 (16)152
N2—H2B⋯O4iii0.902.583.3356 (18)141
N1—H2⋯O4iv0.92 (2)2.49 (2)3.2449 (18)139.8 (18)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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