Literature DB >> 22058833

(4,5-Diaza-fluoren-9-one-κN,N')bis-(1H-imidazole-κN)bis-(thio-cyanato-κN)cobalt(II).

Xiu-Ling Feng, Yu-Ping Zhang.   

Abstract

In the title complex, [Co(NCS)(2)(C(3)H(4)N(2))(2)(C(11)H(6)N(2)O)], the Co(II) atom has a distorted octa-hedral coordination with the N atoms of the 4,5-diaza-fluoren-9-one ligand and two N atoms from imidazole ligands in the equatorial positions and the axial sites occupied by two N atoms of the thio-cyanate ligand. Inter-molecular N-H⋯O hydrogen bonding forms a one-dimensional motif parallel to the cell ab diagonal.

Entities:  

Year:  2011        PMID: 22058833      PMCID: PMC3200902          DOI: 10.1107/S1600536811029060

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Notash et al. (2011 ▶); Xu et al. (2009 ▶). For general background to metal complexes with n class="Chemical">diazafluoren-9-one ligands, see: Biju & Rajasekharan (2008 ▶); Zhang & Li (2009 ▶). For a related structure, see: Yang et al. (2004 ▶).

Experimental

Crystal data

[Co(NCS)2(C3H4N2)2(C11n class="Species">H6N2O)] M = 493.43 Triclinic, a = 9.2239 (9) Å b = 10.920 (1) Å c = 11.9441 (12) Å α = 71.578 (1)° β = 70.582 (1)° γ = 73.931 (2)° V = 1056.48 (18) Å3 Z = 2 Mo Kα radiation μ = 1.04 mm−1 T = 298 K 0.35 × 0.33 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.712, T max = 0.746 5357 measured reflections 3633 independent reflections 2208 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.192 S = 1.06 3633 reflections 280 parameters H-atom parameters constrained Δρmax = 1.10 e Å−3 Δρmin = −0.50 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811029060/qm2016sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811029060/qm2016Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(NCS)2(C3H4N2)2(C11H6N2O)]Z = 2
Mr = 493.43F(000) = 502
Triclinic, P1Dx = 1.551 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.2239 (9) ÅCell parameters from 1602 reflections
b = 10.920 (1) Åθ = 2.4–22.9°
c = 11.9441 (12) ŵ = 1.04 mm1
α = 71.578 (1)°T = 298 K
β = 70.582 (1)°Block, red
γ = 73.931 (2)°0.35 × 0.33 × 0.30 mm
V = 1056.48 (18) Å3
Bruker SMART CCD area-detector diffractometer3633 independent reflections
Radiation source: fine-focus sealed tube2208 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.712, Tmax = 0.746k = −12→10
5357 measured reflectionsl = −14→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.192H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0844P)2 + 0.3689P] where P = (Fo2 + 2Fc2)/3
3633 reflections(Δ/σ)max = 0.001
280 parametersΔρmax = 1.10 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.20940 (9)0.77893 (7)0.26794 (7)0.0446 (3)
N10.3058 (5)0.5787 (4)0.3693 (4)0.0460 (12)
N20.4108 (6)0.7047 (5)0.1105 (4)0.0478 (12)
N30.0422 (6)0.8171 (5)0.4280 (5)0.0497 (12)
N4−0.1818 (7)0.8644 (6)0.5558 (6)0.0788 (18)
H4−0.28150.88440.58550.095*
N50.1501 (6)0.9610 (5)0.1485 (4)0.0491 (12)
N60.0312 (10)1.1390 (7)0.0524 (7)0.127 (3)
H6−0.04511.19750.03060.152*
N70.3778 (6)0.8478 (5)0.2960 (5)0.0529 (13)
N80.0626 (6)0.6936 (5)0.2310 (4)0.0545 (13)
O10.7400 (6)0.2887 (5)0.1886 (5)0.0799 (15)
S10.5575 (2)1.00788 (17)0.30595 (16)0.0623 (5)
S2−0.0800 (3)0.5262 (2)0.19374 (19)0.0811 (6)
C10.6403 (7)0.3839 (6)0.2030 (6)0.0544 (16)
C20.4267 (7)0.5249 (5)0.2920 (5)0.0438 (14)
C30.5196 (7)0.4031 (6)0.3187 (6)0.0504 (15)
C40.4827 (8)0.3284 (6)0.4362 (6)0.0604 (18)
H4A0.53950.24410.45890.072*
C50.3613 (8)0.3810 (6)0.5177 (6)0.0618 (17)
H50.33580.33330.59890.074*
C60.2745 (8)0.5030 (6)0.4839 (6)0.0596 (17)
H6A0.19010.53490.54290.071*
C70.4808 (6)0.5879 (5)0.1624 (5)0.0428 (13)
C80.6092 (7)0.5069 (6)0.1082 (6)0.0524 (15)
C90.6755 (8)0.5511 (7)−0.0145 (6)0.0619 (18)
H90.76410.5015−0.05640.074*
C100.6061 (9)0.6712 (7)−0.0729 (6)0.0664 (19)
H100.64830.7043−0.15610.080*
C110.4755 (8)0.7435 (6)−0.0107 (6)0.0569 (17)
H110.42940.8231−0.05430.068*
C12−0.1081 (8)0.8433 (7)0.4456 (6)0.0650 (18)
H12−0.15800.84700.38830.078*
C13−0.0723 (11)0.8488 (8)0.6116 (7)0.080 (2)
H13−0.08900.85600.69060.096*
C140.0648 (9)0.8211 (7)0.5327 (6)0.0653 (18)
H140.16190.80660.54720.078*
C150.0177 (10)1.0259 (8)0.1344 (8)0.101 (3)
H15−0.07660.99750.17630.121*
C160.1769 (11)1.1482 (8)0.0101 (7)0.081 (2)
H160.22111.2159−0.05010.097*
C170.2483 (9)1.0393 (7)0.0720 (7)0.073 (2)
H170.35571.01920.06330.088*
C180.4548 (7)0.9133 (6)0.2987 (5)0.0457 (14)
C190.0036 (7)0.6238 (6)0.2169 (5)0.0453 (14)
U11U22U33U12U13U23
Co10.0439 (5)0.0449 (5)0.0449 (5)−0.0073 (4)−0.0116 (4)−0.0120 (4)
N10.050 (3)0.044 (3)0.041 (3)−0.006 (2)−0.012 (2)−0.009 (2)
N20.051 (3)0.047 (3)0.044 (3)−0.017 (2)−0.010 (2)−0.007 (2)
N30.051 (3)0.047 (3)0.053 (3)−0.008 (2)−0.011 (2)−0.020 (2)
N40.061 (4)0.077 (4)0.083 (5)−0.012 (3)0.015 (4)−0.035 (4)
N50.047 (3)0.049 (3)0.049 (3)−0.004 (3)−0.015 (2)−0.012 (2)
N60.091 (6)0.097 (6)0.112 (7)0.028 (5)−0.023 (5)0.036 (5)
N70.050 (3)0.054 (3)0.058 (3)−0.010 (3)−0.019 (3)−0.013 (3)
N80.055 (3)0.060 (3)0.052 (3)−0.015 (3)−0.013 (3)−0.017 (3)
O10.060 (3)0.063 (3)0.109 (4)0.007 (3)−0.014 (3)−0.037 (3)
S10.0569 (11)0.0710 (11)0.0654 (12)−0.0240 (9)−0.0175 (9)−0.0143 (9)
S20.0812 (14)0.1021 (15)0.0758 (13)−0.0518 (12)−0.0018 (11)−0.0342 (12)
C10.044 (4)0.053 (4)0.070 (5)−0.007 (3)−0.013 (3)−0.026 (4)
C20.044 (3)0.043 (3)0.045 (4)−0.010 (3)−0.010 (3)−0.012 (3)
C30.051 (4)0.045 (3)0.056 (4)−0.006 (3)−0.018 (3)−0.014 (3)
C40.065 (5)0.045 (4)0.065 (5)−0.005 (3)−0.025 (4)0.000 (3)
C50.070 (5)0.052 (4)0.054 (4)−0.013 (4)−0.013 (4)−0.002 (3)
C60.065 (4)0.060 (4)0.045 (4)−0.013 (3)−0.006 (3)−0.009 (3)
C70.043 (3)0.047 (3)0.043 (3)−0.011 (3)−0.010 (3)−0.017 (3)
C80.043 (4)0.058 (4)0.057 (4)−0.014 (3)−0.007 (3)−0.020 (3)
C90.056 (4)0.073 (5)0.058 (4)−0.022 (4)0.005 (3)−0.032 (4)
C100.072 (5)0.077 (5)0.053 (4)−0.037 (4)−0.002 (4)−0.015 (4)
C110.066 (5)0.058 (4)0.048 (4)−0.026 (3)−0.012 (3)−0.008 (3)
C120.051 (4)0.077 (5)0.066 (5)−0.009 (4)−0.010 (4)−0.027 (4)
C130.096 (6)0.083 (5)0.057 (5)−0.014 (5)−0.003 (5)−0.033 (4)
C140.067 (5)0.070 (4)0.063 (5)−0.006 (4)−0.020 (4)−0.026 (4)
C150.060 (5)0.099 (6)0.090 (6)0.007 (5)−0.013 (5)0.021 (5)
C160.089 (6)0.069 (5)0.077 (6)−0.022 (5)−0.031 (5)0.008 (4)
C170.067 (5)0.064 (5)0.081 (5)−0.021 (4)−0.027 (4)0.007 (4)
C180.043 (4)0.051 (4)0.034 (3)0.003 (3)−0.011 (3)−0.008 (3)
C190.051 (4)0.055 (4)0.025 (3)−0.013 (3)−0.006 (3)−0.005 (3)
Co1—N72.060 (5)C1—C81.487 (9)
Co1—N82.062 (5)C1—C31.492 (8)
Co1—N32.096 (5)C2—C31.374 (8)
Co1—N52.100 (5)C2—C71.457 (8)
Co1—N12.237 (4)C3—C41.365 (8)
Co1—N22.335 (5)C4—C51.344 (9)
N1—C21.318 (7)C4—H4A0.9300
N1—C61.339 (7)C5—C61.365 (9)
N2—C71.319 (7)C5—H50.9300
N2—C111.345 (7)C6—H6A0.9300
N3—C121.293 (8)C7—C81.370 (8)
N3—C141.350 (8)C8—C91.369 (8)
N4—C121.325 (8)C9—C101.367 (10)
N4—C131.332 (9)C9—H90.9300
N4—H40.8600C10—C111.370 (9)
N5—C151.267 (8)C10—H100.9300
N5—C171.331 (8)C11—H110.9300
N6—C161.289 (10)C12—H120.9300
N6—C151.319 (9)C13—C141.325 (10)
N6—H60.8600C13—H130.9300
N7—C181.152 (7)C14—H140.9300
N8—C191.130 (7)C15—H150.9300
O1—C11.197 (7)C16—C171.315 (9)
S1—C181.619 (7)C16—H160.9300
S2—C191.610 (6)C17—H170.9300
N7—Co1—N8173.1 (2)C5—C4—C3117.5 (6)
N7—Co1—N393.6 (2)C5—C4—H4A121.2
N8—Co1—N392.08 (19)C3—C4—H4A121.2
N7—Co1—N590.24 (19)C4—C5—C6121.4 (7)
N8—Co1—N592.91 (19)C4—C5—H5119.3
N3—Co1—N597.45 (19)C6—C5—H5119.3
N7—Co1—N187.91 (18)N1—C6—C5122.8 (6)
N8—Co1—N188.00 (19)N1—C6—H6A118.6
N3—Co1—N191.82 (18)C5—C6—H6A118.6
N5—Co1—N1170.65 (18)N2—C7—C8127.8 (6)
N7—Co1—N285.39 (18)N2—C7—C2122.7 (5)
N8—Co1—N288.39 (18)C8—C7—C2109.4 (5)
N3—Co1—N2170.70 (18)C9—C8—C7117.2 (6)
N5—Co1—N291.80 (18)C9—C8—C1134.9 (6)
N1—Co1—N278.92 (17)C7—C8—C1107.9 (5)
C2—N1—C6114.3 (5)C10—C9—C8117.2 (6)
C2—N1—Co1108.3 (4)C10—C9—H9121.4
C6—N1—Co1137.4 (4)C8—C9—H9121.4
C7—N2—C11113.5 (5)C9—C10—C11121.1 (7)
C7—N2—Co1105.9 (4)C9—C10—H10119.4
C11—N2—Co1140.5 (4)C11—C10—H10119.4
C12—N3—C14105.3 (6)N2—C11—C10123.1 (6)
C12—N3—Co1125.9 (4)N2—C11—H11118.5
C14—N3—Co1128.8 (4)C10—C11—H11118.5
C12—N4—C13107.0 (6)N3—C12—N4111.4 (6)
C12—N4—H4126.5N3—C12—H12124.3
C13—N4—H4126.5N4—C12—H12124.3
C15—N5—C17103.3 (6)C14—C13—N4106.7 (7)
C15—N5—Co1130.3 (5)C14—C13—H13126.6
C17—N5—Co1126.3 (4)N4—C13—H13126.6
C16—N6—C15109.3 (7)C13—C14—N3109.6 (7)
C16—N6—H6125.3C13—C14—H14125.2
C15—N6—H6125.3N3—C14—H14125.2
C18—N7—Co1164.4 (5)N5—C15—N6111.0 (8)
C19—N8—Co1165.8 (5)N5—C15—H15124.5
O1—C1—C8127.0 (6)N6—C15—H15124.5
O1—C1—C3127.4 (6)N6—C16—C17103.7 (7)
C8—C1—C3105.6 (5)N6—C16—H16128.2
N1—C2—C3126.5 (6)C17—C16—H16128.2
N1—C2—C7124.0 (5)C16—C17—N5112.6 (7)
C3—C2—C7109.5 (5)C16—C17—H17123.7
C4—C3—C2117.5 (6)N5—C17—H17123.7
C4—C3—C1135.0 (6)N7—C18—S1177.9 (6)
C2—C3—C1107.5 (6)N8—C19—S2178.7 (5)
N7—Co1—N1—C2−83.4 (4)C7—C2—C3—C10.1 (6)
N8—Co1—N1—C291.1 (4)O1—C1—C3—C4−0.2 (12)
N3—Co1—N1—C2−176.9 (4)C8—C1—C3—C4178.7 (7)
N2—Co1—N1—C22.3 (4)O1—C1—C3—C2−178.1 (6)
N7—Co1—N1—C695.8 (6)C8—C1—C3—C20.8 (6)
N8—Co1—N1—C6−89.7 (6)C2—C3—C4—C5−2.0 (9)
N3—Co1—N1—C62.3 (6)C1—C3—C4—C5−179.7 (6)
N2—Co1—N1—C6−178.5 (6)C3—C4—C5—C62.1 (10)
N7—Co1—N2—C786.0 (4)C2—N1—C6—C50.4 (9)
N8—Co1—N2—C7−91.1 (4)Co1—N1—C6—C5−178.7 (4)
N5—Co1—N2—C7176.1 (4)C4—C5—C6—N1−1.4 (11)
N1—Co1—N2—C7−2.8 (3)C11—N2—C7—C81.4 (8)
N7—Co1—N2—C11−92.8 (6)Co1—N2—C7—C8−177.7 (5)
N8—Co1—N2—C1190.2 (6)C11—N2—C7—C2−177.9 (5)
N5—Co1—N2—C11−2.7 (6)Co1—N2—C7—C23.0 (6)
N1—Co1—N2—C11178.5 (6)N1—C2—C7—N2−1.1 (9)
N7—Co1—N3—C12151.9 (5)C3—C2—C7—N2178.3 (5)
N8—Co1—N3—C12−32.0 (6)N1—C2—C7—C8179.5 (5)
N5—Co1—N3—C1261.2 (6)C3—C2—C7—C8−1.1 (7)
N1—Co1—N3—C12−120.1 (5)N2—C7—C8—C90.6 (9)
N7—Co1—N3—C14−27.4 (6)C2—C7—C8—C9−180.0 (5)
N8—Co1—N3—C14148.7 (5)N2—C7—C8—C1−177.8 (5)
N5—Co1—N3—C14−118.1 (5)C2—C7—C8—C11.6 (6)
N1—Co1—N3—C1460.6 (5)O1—C1—C8—C9−0.6 (12)
N7—Co1—N5—C15−141.3 (7)C3—C1—C8—C9−179.5 (7)
N8—Co1—N5—C1544.9 (7)O1—C1—C8—C7177.4 (6)
N3—Co1—N5—C15−47.6 (7)C3—C1—C8—C7−1.5 (6)
N2—Co1—N5—C15133.3 (7)C7—C8—C9—C10−1.3 (9)
N7—Co1—N5—C1735.0 (6)C1—C8—C9—C10176.6 (6)
N8—Co1—N5—C17−138.8 (6)C8—C9—C10—C11−0.2 (10)
N3—Co1—N5—C17128.7 (6)C7—N2—C11—C10−2.9 (8)
N2—Co1—N5—C17−50.4 (6)Co1—N2—C11—C10175.8 (4)
N3—Co1—N7—C18−84.9 (19)C9—C10—C11—N22.5 (10)
N5—Co1—N7—C1812.5 (19)C14—N3—C12—N40.3 (8)
N1—Co1—N7—C18−176.6 (19)Co1—N3—C12—N4−179.2 (4)
N2—Co1—N7—C18104.3 (19)C13—N4—C12—N3−0.9 (9)
N3—Co1—N8—C19−110 (2)C12—N4—C13—C141.1 (9)
N5—Co1—N8—C19153 (2)N4—C13—C14—N3−1.0 (9)
N1—Co1—N8—C19−18 (2)C12—N3—C14—C130.5 (8)
N2—Co1—N8—C1961 (2)Co1—N3—C14—C13179.9 (5)
C6—N1—C2—C3−0.4 (8)C17—N5—C15—N60.5 (10)
Co1—N1—C2—C3179.0 (5)Co1—N5—C15—N6177.5 (6)
C6—N1—C2—C7178.9 (5)C16—N6—C15—N50.9 (12)
Co1—N1—C2—C7−1.7 (6)C15—N6—C16—C17−1.9 (11)
N1—C2—C3—C41.2 (9)N6—C16—C17—N52.3 (10)
C7—C2—C3—C4−178.2 (5)C15—N5—C17—C16−1.8 (9)
N1—C2—C3—C1179.5 (5)Co1—N5—C17—C16−178.9 (5)
D—H···AD—HH···AD···AD—H···A
N6—H6···O1i0.862.472.980 (10)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6⋯O1i0.862.472.980 (10)119

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dichlorido(4,5-diaza-fluoren-9-one-κN,N')palladium(II).

Authors:  Zhi-Guang Xu; Hai-Yang Liu; Qing-Guang Zhan; Jian Chen; Min-Jian Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05

3.  (4,5-Diaza-fluoren-9-one-κN,N')bis-(thio-cyanato-κS)mercury(II).

Authors:  Behrouz Notash; Nasser Safari; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09
  3 in total
  1 in total

1.  Structurally Diverse Diazafluorene-Ligated Palladium(II) Complexes and Their Implications for Aerobic Oxidation Reactions.

Authors:  Paul B White; Jonathan N Jaworski; Charles G Fry; Brian S Dolinar; Ilia A Guzei; Shannon S Stahl
Journal:  J Am Chem Soc       Date:  2016-04-05       Impact factor: 15.419

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