Literature DB >> 22058816

9-Hy-droxy-4,8-dimethyl-12-(piperidin-1-ylmeth-yl)-3,14-dioxatricyclo-[9.3.0.0]tetra-dec-7-en-13-one.

Mohamed Moumou, Ahmed Benharref, Jean-Claude Daran, Ahmed Elhakmaoui, Moha Berraho.   

Abstract

The title compound, C(20)H(31)NO(4), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxa-tricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from fused five-and ten-membered rings with the pipyridin-1-yl-methyl group as a substituent. The ten-membered ring adopts an approximate chair-chair conformation, while the six-membered ring display a chair conformation and the five-membered ring an envelope conformation with the C(H)-C-C(H) atom at the flap. The dihedral angle between the ten-membered ring and the lactone ring is 21.7 (4)°. The mol-ecular conformation is stabilized by an O-H⋯N hydrogen bond and the crystal structure is stabilized by weak inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 22058816      PMCID: PMC3201218          DOI: 10.1107/S1600536811038803

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); Bellakhdar (1997 ▶); El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the typical conformation of sesquiterpene lactones, see: Watson & Zabel (1982 ▶). For reactivity of this sesquiterpene, see: Hwang et al. (2006 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H31NO4 M = 349.46 Monoclinic, a = 11.8390 (6) Å b = 6.7053 (3) Å c = 12.0875 (6) Å β = 101.399 (5)° V = 940.63 (8) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 180 K 0.44 × 0.13 × 0.11 mm

Data collection

Agilent Xcalibur Sapphire1 long nozzle diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.858, T max = 1.000 10503 measured reflections 2096 independent reflections 1996 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.071 S = 1.05 2096 reflections 229 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811038803/bt5649sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038803/bt5649Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811038803/bt5649Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H31NO4F(000) = 380
Mr = 349.46Dx = 1.234 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 10503 reflections
a = 11.8390 (6) Åθ = 3.4–26.4°
b = 6.7053 (3) ŵ = 0.09 mm1
c = 12.0875 (6) ÅT = 180 K
β = 101.399 (5)°Box, colorless
V = 940.63 (8) Å30.44 × 0.13 × 0.11 mm
Z = 2
Agilent Xcalibur Sapphire1 long nozzle diffractometer2096 independent reflections
Radiation source: fine-focus sealed tube1996 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 8.2632 pixels mm-1θmax = 26.4°, θmin = 3.4°
ω scanh = −14→14
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −8→8
Tmin = 0.858, Tmax = 1.000l = −15→15
10503 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0473P)2 + 0.0809P] where P = (Fo2 + 2Fc2)/3
2096 reflections(Δ/σ)max < 0.001
229 parametersΔρmax = 0.16 e Å3
1 restraintΔρmin = −0.16 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.71467 (12)0.2598 (2)0.66934 (12)0.0185 (3)
H10.76780.18670.73060.022*
C20.78094 (12)0.3815 (2)0.60123 (12)0.0204 (3)
H20.73290.48080.55100.024*
C30.90205 (13)0.4403 (3)0.63599 (14)0.0242 (3)
C40.93406 (14)0.6394 (3)0.59414 (15)0.0320 (4)
H4A0.88320.66880.52060.038*
H4B1.01440.63410.58230.038*
C50.92313 (15)0.8072 (3)0.67800 (17)0.0341 (4)
H5A0.99050.80400.74130.041*
H5B0.92260.93790.63970.041*
C60.81409 (13)0.7844 (2)0.72347 (14)0.0265 (3)
H60.74400.79970.67030.032*
C70.80412 (13)0.7456 (3)0.82848 (14)0.0264 (3)
C80.68939 (14)0.6851 (2)0.85621 (13)0.0237 (3)
H80.69200.71710.93750.028*
C90.67106 (13)0.4587 (2)0.84106 (12)0.0202 (3)
H9A0.74480.39060.87200.024*
H9B0.61430.41570.88640.024*
C100.62893 (11)0.3886 (2)0.71874 (11)0.0172 (3)
H100.61030.50930.67000.021*
C110.52119 (12)0.2569 (2)0.70277 (11)0.0186 (3)
H110.52050.18080.77380.022*
C120.53608 (12)0.1144 (2)0.61067 (12)0.0207 (3)
C130.40794 (12)0.3691 (3)0.66791 (12)0.0216 (3)
H13A0.40400.42560.59160.026*
H13B0.34340.27370.66360.026*
C140.90140 (16)0.7399 (4)0.93004 (17)0.0431 (5)
H14A0.97450.76630.90630.065*
H14B0.90440.60790.96540.065*
H14C0.88860.84170.98440.065*
C150.97876 (14)0.3631 (3)0.74176 (16)0.0336 (4)
H15A1.05730.34660.72860.050*
H15B0.94970.23420.76210.050*
H15C0.97930.45830.80340.050*
C160.36161 (14)0.4537 (3)0.84869 (13)0.0241 (3)
H16A0.42190.36040.88640.029*
H16B0.28820.37910.82910.029*
C170.30269 (13)0.6655 (3)0.68699 (13)0.0258 (3)
H17A0.22980.59030.66490.031*
H17B0.32480.71640.61740.031*
C180.28408 (15)0.8390 (3)0.76082 (15)0.0316 (4)
H18A0.21960.92190.72070.038*
H18B0.35430.92280.77600.038*
C190.34845 (15)0.6219 (3)0.92854 (13)0.0315 (4)
H19A0.42290.69240.95130.038*
H19B0.32660.56680.99740.038*
C200.25678 (15)0.7677 (3)0.87217 (14)0.0341 (4)
H20A0.25390.88330.92250.041*
H20B0.18040.70190.85830.041*
N0.39312 (10)0.5309 (2)0.74545 (10)0.0202 (3)
O10.46527 (10)0.00689 (19)0.55635 (10)0.0299 (3)
O20.64460 (9)0.12085 (16)0.59253 (9)0.0211 (2)
O30.86868 (9)0.2885 (2)0.55096 (10)0.0295 (3)
O40.59735 (10)0.79420 (18)0.79140 (10)0.0297 (3)
H40.53760.72350.77950.045*
U11U22U33U12U13U23
C10.0182 (6)0.0179 (7)0.0187 (6)−0.0003 (6)0.0017 (5)−0.0029 (6)
C20.0194 (7)0.0215 (7)0.0212 (7)0.0018 (6)0.0065 (6)−0.0019 (6)
C30.0180 (7)0.0247 (8)0.0314 (8)−0.0006 (6)0.0081 (6)−0.0036 (7)
C40.0246 (8)0.0331 (10)0.0415 (9)−0.0051 (7)0.0143 (7)0.0047 (8)
C50.0301 (8)0.0225 (8)0.0514 (11)−0.0055 (7)0.0119 (8)0.0035 (8)
C60.0237 (7)0.0155 (7)0.0401 (9)0.0000 (6)0.0060 (6)0.0004 (7)
C70.0242 (7)0.0188 (7)0.0344 (8)−0.0023 (6)0.0015 (6)−0.0065 (6)
C80.0251 (7)0.0208 (7)0.0240 (7)0.0002 (6)0.0022 (6)−0.0054 (6)
C90.0217 (7)0.0215 (7)0.0169 (7)−0.0015 (6)0.0024 (5)−0.0015 (6)
C100.0171 (6)0.0175 (7)0.0169 (7)−0.0008 (5)0.0033 (5)−0.0007 (5)
C110.0192 (6)0.0200 (7)0.0167 (6)−0.0033 (6)0.0041 (5)0.0000 (6)
C120.0211 (7)0.0215 (7)0.0198 (6)−0.0024 (6)0.0047 (5)−0.0004 (6)
C130.0188 (7)0.0284 (8)0.0178 (7)−0.0012 (6)0.0041 (5)−0.0021 (6)
C140.0302 (9)0.0549 (13)0.0404 (10)−0.0072 (9)−0.0021 (7)−0.0102 (10)
C150.0217 (7)0.0288 (9)0.0470 (10)0.0011 (7)−0.0012 (7)−0.0003 (8)
C160.0269 (7)0.0272 (8)0.0199 (7)0.0002 (7)0.0089 (6)0.0032 (6)
C170.0235 (7)0.0325 (9)0.0221 (7)0.0055 (7)0.0057 (6)0.0052 (7)
C180.0319 (8)0.0283 (9)0.0342 (9)0.0086 (7)0.0058 (7)0.0037 (7)
C190.0377 (9)0.0373 (10)0.0202 (7)0.0049 (8)0.0078 (6)−0.0008 (7)
C200.0344 (9)0.0408 (10)0.0290 (8)0.0092 (9)0.0108 (7)−0.0049 (8)
N0.0188 (6)0.0247 (6)0.0178 (6)0.0011 (5)0.0057 (4)0.0031 (5)
O10.0277 (6)0.0321 (7)0.0293 (6)−0.0091 (5)0.0041 (5)−0.0100 (5)
O20.0207 (5)0.0207 (5)0.0226 (5)−0.0025 (4)0.0058 (4)−0.0058 (4)
O30.0236 (5)0.0338 (6)0.0346 (6)−0.0012 (5)0.0145 (5)−0.0100 (6)
O40.0244 (5)0.0211 (6)0.0431 (6)0.0033 (5)0.0051 (5)−0.0017 (6)
C1—O21.4541 (17)C11—H111.0000
C1—C21.488 (2)C12—O11.1982 (19)
C1—C101.5401 (19)C12—O21.3461 (17)
C1—H11.0000C13—N1.466 (2)
C2—O31.4444 (17)C13—H13A0.9900
C2—C31.466 (2)C13—H13B0.9900
C2—H21.0000C14—H14A0.9800
C3—O31.445 (2)C14—H14B0.9800
C3—C41.503 (2)C14—H14C0.9800
C3—C151.506 (2)C15—H15A0.9800
C4—C51.537 (3)C15—H15B0.9800
C4—H4A0.9900C15—H15C0.9800
C4—H4B0.9900C16—N1.4658 (19)
C5—C61.508 (2)C16—C191.512 (2)
C5—H5A0.9900C16—H16A0.9900
C5—H5B0.9900C16—H16B0.9900
C6—C71.324 (2)C17—N1.4699 (19)
C6—H60.9500C17—C181.509 (2)
C7—C141.509 (2)C17—H17A0.9900
C7—C81.517 (2)C17—H17B0.9900
C8—O41.4136 (19)C18—C201.522 (2)
C8—C91.540 (2)C18—H18A0.9900
C8—H81.0000C18—H18B0.9900
C9—C101.5375 (19)C19—C201.518 (3)
C9—H9A0.9900C19—H19A0.9900
C9—H9B0.9900C19—H19B0.9900
C10—C111.5320 (19)C20—H20A0.9900
C10—H101.0000C20—H20B0.9900
C11—C121.504 (2)O4—H40.8400
C11—C131.523 (2)
O2—C1—C2107.15 (11)C10—C11—H11109.5
O2—C1—C10105.68 (10)O1—C12—O2121.14 (14)
C2—C1—C10111.55 (12)O1—C12—C11128.04 (14)
O2—C1—H1110.8O2—C12—C11110.82 (12)
C2—C1—H1110.8N—C13—C11113.50 (11)
C10—C1—H1110.8N—C13—H13A108.9
O3—C2—C359.52 (9)C11—C13—H13A108.9
O3—C2—C1119.86 (13)N—C13—H13B108.9
C3—C2—C1125.56 (13)C11—C13—H13B108.9
O3—C2—H2113.7H13A—C13—H13B107.7
C3—C2—H2113.7C7—C14—H14A109.5
C1—C2—H2113.7C7—C14—H14B109.5
O3—C3—C259.49 (9)H14A—C14—H14B109.5
O3—C3—C4115.98 (14)C7—C14—H14C109.5
C2—C3—C4116.10 (14)H14A—C14—H14C109.5
O3—C3—C15113.34 (14)H14B—C14—H14C109.5
C2—C3—C15122.85 (14)C3—C15—H15A109.5
C4—C3—C15116.18 (14)C3—C15—H15B109.5
C3—C4—C5111.64 (14)H15A—C15—H15B109.5
C3—C4—H4A109.3C3—C15—H15C109.5
C5—C4—H4A109.3H15A—C15—H15C109.5
C3—C4—H4B109.3H15B—C15—H15C109.5
C5—C4—H4B109.3N—C16—C19110.83 (14)
H4A—C4—H4B108.0N—C16—H16A109.5
C6—C5—C4110.84 (14)C19—C16—H16A109.5
C6—C5—H5A109.5N—C16—H16B109.5
C4—C5—H5A109.5C19—C16—H16B109.5
C6—C5—H5B109.5H16A—C16—H16B108.1
C4—C5—H5B109.5N—C17—C18111.51 (12)
H5A—C5—H5B108.1N—C17—H17A109.3
C7—C6—C5127.93 (16)C18—C17—H17A109.3
C7—C6—H6116.0N—C17—H17B109.3
C5—C6—H6116.0C18—C17—H17B109.3
C6—C7—C14125.94 (16)H17A—C17—H17B108.0
C6—C7—C8121.18 (14)C17—C18—C20111.23 (15)
C14—C7—C8112.72 (15)C17—C18—H18A109.4
O4—C8—C7111.41 (13)C20—C18—H18A109.4
O4—C8—C9111.66 (12)C17—C18—H18B109.4
C7—C8—C9110.39 (13)C20—C18—H18B109.4
O4—C8—H8107.7H18A—C18—H18B108.0
C7—C8—H8107.7C16—C19—C20110.39 (13)
C9—C8—H8107.7C16—C19—H19A109.6
C10—C9—C8115.28 (13)C20—C19—H19A109.6
C10—C9—H9A108.5C16—C19—H19B109.6
C8—C9—H9A108.5C20—C19—H19B109.6
C10—C9—H9B108.5H19A—C19—H19B108.1
C8—C9—H9B108.5C19—C20—C18109.95 (14)
H9A—C9—H9B107.5C19—C20—H20A109.7
C11—C10—C9113.65 (11)C18—C20—H20A109.7
C11—C10—C1102.95 (12)C19—C20—H20B109.7
C9—C10—C1115.52 (12)C18—C20—H20B109.7
C11—C10—H10108.1H20A—C20—H20B108.2
C9—C10—H10108.1C16—N—C13111.44 (13)
C1—C10—H10108.1C16—N—C17110.02 (12)
C12—C11—C13109.57 (11)C13—N—C17108.34 (11)
C12—C11—C10104.07 (11)C12—O2—C1111.05 (11)
C13—C11—C10114.55 (13)C2—O3—C360.99 (9)
C12—C11—H11109.5C8—O4—H4109.5
C13—C11—H11109.5
D—H···AD—HH···AD···AD—H···A
O4—H4···N0.842.122.9564 (14)176
C2—H2···O1i1.002.453.2622 (15)138
C4—H4B···O3ii0.992.543.3387 (16)137
C6—H6···O2iii0.952.543.2206 (15)128
C13—H13A···O2i0.992.553.5178 (15)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯N0.842.122.9564 (14)176
C2—H2⋯O1i1.002.453.2622 (15)138
C4—H4B⋯O3ii0.992.543.3387 (16)137
C6—H6⋯O2iii0.952.543.2206 (15)128
C13—H13A⋯O2i0.992.553.5178 (15)166

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

4.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

5.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Comparison of the effects of alcoholic extract of aerial parts of Anvillea garcinii and atorvastatin on the lipid profile and thyroid hormones in hypercholesterolemic rats.

Authors:  Fatemeh Rasekh; Zohre Atashi-Nodoshan; Ali Zarei; Amir Abbas Minaeifar; Saeed Changizi-Ashtiyani; Zahra Afrasyabi
Journal:  Avicenna J Phytomed       Date:  2022 Mar-Apr
  1 in total

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