| Literature DB >> 22058815 |
C John McAdam1, Stephen C Moratti, Jim Simpson, Zheng Shi.
Abstract
In the title mol-ecule, C(16)H(14)O(4)S, the dihydro-cyclo-penta-thio-phenone ring system is almost planar, with an r.m.s. deviation of 0.060 Å from the best fit plane through all nine non-H atoms. The cyclo-penta-none ring adopts a severely flattened envelope conformation with the C atom carrying the OH and ethylcarboxylate substituents at the flap. This atom lies only 0.185 (3) Å from the plane through the other four C atoms. The phenyl substituent is inclined at 43.37 (5)° to the dihydro-cyclo-penta-thio-phenone mean plane. In the crystal, mol-ecules are linked by pairs of O-H⋯O hydrogen bonds, forming inversion dimers with R(2) (2)(10) ring motifs. Weak C-H⋯O hydrogen bonds also link mol-ecules into chains along c, while an approximately orthogonal set of C-H⋯O contacts form chains along b, resulting in layers lying parallel to (100). Inversion dimers also form through weaker R(2) (2)(12) C-H⋯S contacts, which combine with C-H⋯O contacts to form stacks along b.Entities:
Year: 2011 PMID: 22058815 PMCID: PMC3201281 DOI: 10.1107/S1600536811037032
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H14O4S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4122 reflections | |
| θ = 2.7–24.9° | |
| µ = 0.24 mm−1 | |
| α = 84.840 (3)° | |
| β = 80.929 (3)° | Block, colourless |
| γ = 88.086 (3)° | 0.45 × 0.35 × 0.25 mm |
| Bruker APEXII CCD area-detector diffractometer | 2584 independent reflections |
| Radiation source: fine-focus sealed tube | 2233 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.2°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 13007 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2584 reflections | (Δ/σ)max < 0.001 |
| 194 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Experimental. Spectroscopic data for the title compound:
1H NMR (δ p.p.m., CDCl3, 400 MHz): 8.08 (1 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.31491 (5) | 0.47012 (4) | 0.41577 (4) | 0.01868 (13) | |
| C1 | 0.2877 (2) | 0.33654 (18) | 0.54308 (16) | 0.0206 (4) | |
| H1 | 0.3238 | 0.2366 | 0.5349 | 0.025* | |
| C2 | 0.2095 (2) | 0.38688 (18) | 0.65715 (16) | 0.0185 (4) | |
| H2 | 0.1850 | 0.3271 | 0.7365 | 0.022* | |
| C3 | 0.1697 (2) | 0.53999 (17) | 0.64162 (15) | 0.0149 (3) | |
| C4 | 0.2184 (2) | 0.59827 (17) | 0.51632 (15) | 0.0155 (3) | |
| C5 | 0.1669 (2) | 0.75165 (17) | 0.49802 (15) | 0.0154 (3) | |
| O5 | 0.17464 (15) | 0.83394 (12) | 0.39918 (10) | 0.0204 (3) | |
| C6 | 0.0911 (2) | 0.79820 (17) | 0.63548 (15) | 0.0152 (3) | |
| O6 | −0.07237 (14) | 0.86931 (13) | 0.63575 (12) | 0.0203 (3) | |
| H6 | −0.064 (3) | 0.959 (2) | 0.6268 (19) | 0.030* | |
| C7 | 0.0721 (2) | 0.65116 (17) | 0.72591 (15) | 0.0158 (3) | |
| H7 | −0.0542 | 0.6251 | 0.7382 | 0.019* | |
| C8 | 0.1173 (2) | 0.66251 (18) | 0.86036 (15) | 0.0174 (4) | |
| C9 | 0.2418 (2) | 0.57266 (19) | 0.91240 (16) | 0.0228 (4) | |
| H9 | 0.3044 | 0.5001 | 0.8629 | 0.027* | |
| C10 | 0.2752 (3) | 0.5886 (2) | 1.03705 (17) | 0.0293 (4) | |
| H10 | 0.3582 | 0.5247 | 1.0728 | 0.035* | |
| C11 | 0.1892 (3) | 0.6958 (2) | 1.10879 (17) | 0.0292 (4) | |
| H11 | 0.2145 | 0.7074 | 1.1929 | 0.035* | |
| C12 | 0.0658 (3) | 0.78667 (19) | 1.05765 (17) | 0.0272 (4) | |
| H12 | 0.0067 | 0.8614 | 1.1064 | 0.033* | |
| C13 | 0.0281 (2) | 0.76864 (18) | 0.93510 (16) | 0.0216 (4) | |
| H13 | −0.0595 | 0.8293 | 0.9017 | 0.026* | |
| C14 | 0.2214 (2) | 0.90456 (17) | 0.67132 (14) | 0.0147 (3) | |
| O14 | 0.18207 (15) | 1.02944 (12) | 0.69500 (11) | 0.0212 (3) | |
| O15 | 0.38114 (14) | 0.84388 (12) | 0.66685 (11) | 0.0200 (3) | |
| C15 | 0.5156 (2) | 0.9380 (2) | 0.69937 (17) | 0.0245 (4) | |
| H15A | 0.4980 | 1.0404 | 0.6625 | 0.029* | |
| H15B | 0.6326 | 0.9028 | 0.6600 | 0.029* | |
| C16 | 0.5090 (3) | 0.9368 (3) | 0.8421 (2) | 0.0471 (6) | |
| H16A | 0.3957 | 0.9768 | 0.8807 | 0.071* | |
| H16B | 0.6030 | 0.9975 | 0.8603 | 0.071* | |
| H16C | 0.5241 | 0.8353 | 0.8790 | 0.071* |
| S1 | 0.0229 (2) | 0.0171 (2) | 0.0166 (2) | 0.00254 (17) | −0.00388 (17) | −0.00395 (16) |
| C1 | 0.0247 (9) | 0.0143 (8) | 0.0237 (9) | 0.0026 (7) | −0.0072 (7) | −0.0022 (7) |
| C2 | 0.0210 (9) | 0.0167 (8) | 0.0179 (8) | −0.0010 (7) | −0.0032 (7) | −0.0007 (7) |
| C3 | 0.0122 (8) | 0.0167 (8) | 0.0168 (8) | −0.0012 (6) | −0.0044 (6) | −0.0021 (6) |
| C4 | 0.0142 (8) | 0.0158 (8) | 0.0177 (8) | 0.0005 (6) | −0.0046 (6) | −0.0038 (7) |
| C5 | 0.0120 (8) | 0.0167 (8) | 0.0185 (9) | −0.0017 (6) | −0.0051 (6) | −0.0023 (7) |
| O5 | 0.0252 (7) | 0.0177 (6) | 0.0184 (6) | 0.0006 (5) | −0.0062 (5) | 0.0014 (5) |
| C6 | 0.0115 (8) | 0.0155 (8) | 0.0189 (8) | 0.0029 (6) | −0.0031 (6) | −0.0027 (7) |
| O6 | 0.0136 (6) | 0.0150 (6) | 0.0327 (7) | 0.0042 (5) | −0.0057 (5) | −0.0029 (5) |
| C7 | 0.0128 (8) | 0.0148 (8) | 0.0198 (9) | −0.0012 (6) | −0.0022 (6) | −0.0008 (7) |
| C8 | 0.0174 (9) | 0.0167 (8) | 0.0169 (8) | −0.0037 (7) | 0.0015 (7) | −0.0009 (7) |
| C9 | 0.0246 (9) | 0.0243 (9) | 0.0194 (9) | 0.0031 (7) | −0.0023 (7) | −0.0050 (7) |
| C10 | 0.0317 (11) | 0.0351 (11) | 0.0220 (10) | 0.0013 (9) | −0.0086 (8) | −0.0006 (8) |
| C11 | 0.0407 (11) | 0.0329 (11) | 0.0146 (9) | −0.0079 (9) | −0.0034 (8) | −0.0034 (8) |
| C12 | 0.0385 (11) | 0.0207 (9) | 0.0199 (9) | −0.0036 (8) | 0.0070 (8) | −0.0066 (7) |
| C13 | 0.0234 (9) | 0.0185 (9) | 0.0212 (9) | −0.0008 (7) | 0.0014 (7) | 0.0001 (7) |
| C14 | 0.0163 (8) | 0.0157 (8) | 0.0116 (8) | −0.0006 (7) | −0.0003 (6) | −0.0006 (6) |
| O14 | 0.0220 (6) | 0.0149 (6) | 0.0270 (7) | 0.0009 (5) | −0.0047 (5) | −0.0034 (5) |
| O15 | 0.0118 (6) | 0.0222 (6) | 0.0278 (7) | 0.0012 (5) | −0.0050 (5) | −0.0098 (5) |
| C15 | 0.0139 (9) | 0.0281 (10) | 0.0334 (10) | −0.0044 (7) | −0.0040 (7) | −0.0113 (8) |
| C16 | 0.0419 (13) | 0.0704 (16) | 0.0341 (12) | −0.0203 (12) | −0.0160 (10) | −0.0069 (11) |
| S1—C1 | 1.7164 (17) | C9—C10 | 1.395 (2) |
| S1—C4 | 1.7171 (16) | C9—H9 | 0.9500 |
| C1—C2 | 1.365 (2) | C10—C11 | 1.376 (3) |
| C1—H1 | 0.9500 | C10—H10 | 0.9500 |
| C2—C3 | 1.417 (2) | C11—C12 | 1.384 (3) |
| C2—H2 | 0.9500 | C11—H11 | 0.9500 |
| C3—C4 | 1.374 (2) | C12—C13 | 1.389 (2) |
| C3—C7 | 1.509 (2) | C12—H12 | 0.9500 |
| C4—C5 | 1.443 (2) | C13—H13 | 0.9500 |
| C5—O5 | 1.2190 (19) | C14—O14 | 1.2041 (19) |
| C5—C6 | 1.560 (2) | C14—O15 | 1.3332 (19) |
| C6—O6 | 1.4018 (18) | O15—C15 | 1.4689 (19) |
| C6—C14 | 1.531 (2) | C15—C16 | 1.491 (3) |
| C6—C7 | 1.567 (2) | C15—H15A | 0.9900 |
| O6—H6 | 0.82 (2) | C15—H15B | 0.9900 |
| C7—C8 | 1.520 (2) | C16—H16A | 0.9800 |
| C7—H7 | 1.0000 | C16—H16B | 0.9800 |
| C8—C9 | 1.389 (2) | C16—H16C | 0.9800 |
| C8—C13 | 1.395 (2) | ||
| C1—S1—C4 | 89.88 (8) | C8—C9—C10 | 120.27 (16) |
| C2—C1—S1 | 113.94 (13) | C8—C9—H9 | 119.9 |
| C2—C1—H1 | 123.0 | C10—C9—H9 | 119.9 |
| S1—C1—H1 | 123.0 | C11—C10—C9 | 120.64 (17) |
| C1—C2—C3 | 111.12 (15) | C11—C10—H10 | 119.7 |
| C1—C2—H2 | 124.4 | C9—C10—H10 | 119.7 |
| C3—C2—H2 | 124.4 | C10—C11—C12 | 119.60 (16) |
| C4—C3—C2 | 112.06 (14) | C10—C11—H11 | 120.2 |
| C4—C3—C7 | 112.16 (14) | C12—C11—H11 | 120.2 |
| C2—C3—C7 | 135.47 (15) | C11—C12—C13 | 120.06 (16) |
| C3—C4—C5 | 112.25 (14) | C11—C12—H12 | 120.0 |
| C3—C4—S1 | 112.99 (12) | C13—C12—H12 | 120.0 |
| C5—C4—S1 | 134.64 (13) | C12—C13—C8 | 120.82 (17) |
| O5—C5—C4 | 130.13 (15) | C12—C13—H13 | 119.6 |
| O5—C5—C6 | 124.00 (14) | C8—C13—H13 | 119.6 |
| C4—C5—C6 | 105.87 (13) | O14—C14—O15 | 125.38 (15) |
| O6—C6—C14 | 109.60 (13) | O14—C14—C6 | 122.73 (14) |
| O6—C6—C5 | 111.05 (12) | O15—C14—C6 | 111.83 (13) |
| C14—C6—C5 | 106.85 (12) | C14—O15—C15 | 115.81 (12) |
| O6—C6—C7 | 110.20 (12) | O15—C15—C16 | 111.60 (15) |
| C14—C6—C7 | 113.48 (12) | O15—C15—H15A | 109.3 |
| C5—C6—C7 | 105.56 (12) | C16—C15—H15A | 109.3 |
| C6—O6—H6 | 111.8 (14) | O15—C15—H15B | 109.3 |
| C3—C7—C8 | 119.14 (13) | C16—C15—H15B | 109.3 |
| C3—C7—C6 | 102.88 (12) | H15A—C15—H15B | 108.0 |
| C8—C7—C6 | 114.66 (13) | C15—C16—H16A | 109.5 |
| C3—C7—H7 | 106.4 | C15—C16—H16B | 109.5 |
| C8—C7—H7 | 106.4 | H16A—C16—H16B | 109.5 |
| C6—C7—H7 | 106.4 | C15—C16—H16C | 109.5 |
| C9—C8—C13 | 118.56 (15) | H16A—C16—H16C | 109.5 |
| C9—C8—C7 | 123.45 (14) | H16B—C16—H16C | 109.5 |
| C13—C8—C7 | 117.99 (15) |
| H··· | ||||
| O6—H6···O14 | 0.82 (2) | 2.27 (2) | 2.6705 (16) | 110.8 (16) |
| O6—H6···O5i | 0.82 (2) | 2.06 (2) | 2.7973 (16) | 150.5 (19) |
| C1—H1···O14ii | 0.95 | 2.56 | 3.157 (2) | 121 |
| C11—H11···O5iii | 0.95 | 2.52 | 3.386 (2) | 152 |
| C15—H15B···O6iv | 0.99 | 2.27 | 3.206 (2) | 157 |
| C7—H7···S1v | 1.00 | 2.97 | 3.7855 (16) | 139 |
| C12—H12···O14vi | 0.95 | 2.61 | 3.497 (2) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O6—H6⋯O14 | 0.82 (2) | 2.27 (2) | 2.6705 (16) | 110.8 (16) |
| O6—H6⋯O5i | 0.82 (2) | 2.06 (2) | 2.7973 (16) | 150.5 (19) |
| C1—H1⋯O14ii | 0.95 | 2.56 | 3.157 (2) | 121 |
| C11—H11⋯O5iii | 0.95 | 2.52 | 3.386 (2) | 152 |
| C15—H15 | 0.99 | 2.27 | 3.206 (2) | 157 |
| C7—H7⋯S1v | 1.00 | 2.97 | 3.7855 (16) | 139 |
| C12—H12⋯O14vi | 0.95 | 2.61 | 3.497 (2) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .