| Literature DB >> 22058793 |
Rasool Kheyrabadi, Zohreh Habibi, Seik Weng Ng.
Abstract
The eudesmane-type terpenoid, C(20)H(30)O(5), isolated from Sclerorhachis platyrachis, has a deca-lin skeleton whose six-membered rings adopt chair conformations. The two methyl substituents occupy axial positions, whereas the other three substituents occupy equatorial positions. The hy-droxy group is an intra-molecular hydrogen-bond donor to the single-bond ester O atom; adjacent mol-ecules are linked through the carb-oxy-lic acid interacting with the hydroxyl group, forming a hydrogen-bonded chain running along the c axis.Entities:
Year: 2011 PMID: 22058793 PMCID: PMC3201322 DOI: 10.1107/S1600536811037640
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H30O5 | |
| Monoclinic, | Cu |
| Hall symbol: P 2yb | Cell parameters from 4968 reflections |
| θ = 5.6–74.1° | |
| µ = 0.71 mm−1 | |
| β = 110.184 (2)° | Prism, colourless |
| 0.20 × 0.20 × 0.20 mm | |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 3663 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 3635 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 74.2°, θmin = 5.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5962 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3663 reflections | Δρmax = 0.19 e Å−3 |
| 238 parameters | Δρmin = −0.13 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1705 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.08 (11) |
| O1 | 0.94364 (17) | 0.50094 (5) | 0.32350 (12) | 0.0229 (2) | |
| O2 | 1.0317 (2) | 0.39226 (6) | 0.42340 (14) | 0.0337 (2) | |
| O3 | 0.88724 (14) | 0.44178 (4) | −0.13924 (11) | 0.01664 (18) | |
| O4 | 0.64080 (17) | 0.41443 (5) | −0.00727 (13) | 0.0264 (2) | |
| O5 | 0.76555 (15) | 0.51072 (5) | −0.43525 (11) | 0.01914 (19) | |
| C1 | 1.0458 (2) | 0.43922 (7) | 0.33077 (16) | 0.0212 (3) | |
| C2 | 1.1838 (2) | 0.43410 (7) | 0.21712 (15) | 0.0190 (2) | |
| C3 | 1.3138 (3) | 0.37790 (8) | 0.2342 (2) | 0.0305 (3) | |
| H3A | 1.3167 | 0.3431 | 0.3155 | 0.037* | |
| H3B | 1.4042 | 0.3723 | 0.1651 | 0.037* | |
| C4 | 1.1868 (2) | 0.49268 (6) | 0.09608 (15) | 0.0170 (2) | |
| H4 | 1.2901 | 0.4766 | 0.0358 | 0.020* | |
| C5 | 1.2922 (2) | 0.56070 (7) | 0.19001 (15) | 0.0200 (3) | |
| H5A | 1.2069 | 0.5752 | 0.2636 | 0.024* | |
| H5B | 1.4512 | 0.5514 | 0.2626 | 0.024* | |
| C6 | 1.2884 (2) | 0.62031 (7) | 0.06860 (16) | 0.0199 (3) | |
| H6A | 1.3928 | 0.6086 | 0.0073 | 0.024* | |
| H6B | 1.3454 | 0.6637 | 0.1342 | 0.024* | |
| C7 | 1.0501 (2) | 0.63443 (6) | −0.06021 (15) | 0.0167 (2) | |
| C8 | 0.8926 (2) | 0.65941 (7) | 0.03410 (16) | 0.0205 (3) | |
| H8A | 0.9591 | 0.7008 | 0.1024 | 0.031* | |
| H8B | 0.8751 | 0.6217 | 0.1075 | 0.031* | |
| H8C | 0.7435 | 0.6717 | −0.0477 | 0.031* | |
| C9 | 1.0683 (2) | 0.69343 (7) | −0.17927 (17) | 0.0198 (3) | |
| H9A | 1.1013 | 0.7383 | −0.1162 | 0.024* | |
| H9B | 1.1968 | 0.6832 | −0.2182 | 0.024* | |
| C10 | 0.8522 (2) | 0.70175 (7) | −0.33205 (16) | 0.0205 (3) | |
| H10A | 0.7238 | 0.7141 | −0.2946 | 0.025* | |
| H10B | 0.8720 | 0.7402 | −0.4047 | 0.025* | |
| C11 | 0.8004 (2) | 0.63328 (7) | −0.43153 (15) | 0.0196 (3) | |
| H11A | 0.9268 | 0.6226 | −0.4726 | 0.023* | |
| H11B | 0.6611 | 0.6396 | −0.5313 | 0.023* | |
| C12 | 0.7668 (2) | 0.57076 (7) | −0.32876 (14) | 0.0165 (2) | |
| C13 | 0.5355 (2) | 0.57294 (7) | −0.30647 (15) | 0.0210 (3) | |
| H13A | 0.5234 | 0.5336 | −0.2353 | 0.031* | |
| H13B | 0.4151 | 0.5693 | −0.4169 | 0.031* | |
| H13C | 0.5196 | 0.6173 | −0.2529 | 0.031* | |
| C14 | 0.97307 (19) | 0.56460 (6) | −0.16172 (14) | 0.0150 (2) | |
| H14 | 1.1038 | 0.5505 | −0.1968 | 0.018* | |
| C15 | 0.95518 (19) | 0.50674 (6) | −0.04079 (14) | 0.0144 (2) | |
| H15 | 0.8402 | 0.5198 | 0.0118 | 0.017* | |
| C16 | 0.7264 (2) | 0.40082 (6) | −0.11125 (15) | 0.0178 (2) | |
| C17 | 0.6621 (2) | 0.33936 (6) | −0.22701 (15) | 0.0172 (2) | |
| C18 | 0.7910 (2) | 0.32087 (7) | −0.31761 (16) | 0.0196 (3) | |
| H18 | 0.9227 | 0.3486 | −0.3021 | 0.024* | |
| C19 | 0.7516 (2) | 0.26166 (7) | −0.44010 (17) | 0.0249 (3) | |
| H19A | 0.8832 | 0.2301 | −0.4053 | 0.037* | |
| H19B | 0.7301 | 0.2804 | −0.5526 | 0.037* | |
| H19C | 0.6156 | 0.2356 | −0.4429 | 0.037* | |
| C20 | 0.4449 (2) | 0.30420 (7) | −0.23055 (18) | 0.0249 (3) | |
| H20A | 0.4210 | 0.2614 | −0.2990 | 0.037* | |
| H20B | 0.3170 | 0.3364 | −0.2795 | 0.037* | |
| H20C | 0.4556 | 0.2920 | −0.1154 | 0.037* | |
| H1 | 0.881 (4) | 0.5016 (12) | 0.399 (3) | 0.053 (6)* | |
| H5 | 0.787 (4) | 0.4729 (12) | −0.379 (3) | 0.041 (5)* |
| O1 | 0.0310 (5) | 0.0223 (5) | 0.0201 (4) | 0.0048 (4) | 0.0150 (4) | 0.0010 (4) |
| O2 | 0.0468 (6) | 0.0291 (5) | 0.0353 (6) | 0.0089 (5) | 0.0270 (5) | 0.0130 (5) |
| O3 | 0.0187 (4) | 0.0162 (4) | 0.0172 (4) | −0.0033 (3) | 0.0090 (3) | −0.0039 (3) |
| O4 | 0.0302 (5) | 0.0262 (5) | 0.0305 (5) | −0.0080 (4) | 0.0205 (4) | −0.0073 (4) |
| O5 | 0.0248 (5) | 0.0190 (5) | 0.0144 (4) | 0.0004 (4) | 0.0078 (3) | −0.0025 (4) |
| C1 | 0.0245 (6) | 0.0220 (6) | 0.0178 (6) | 0.0016 (5) | 0.0082 (5) | 0.0016 (5) |
| C2 | 0.0211 (5) | 0.0192 (6) | 0.0170 (5) | −0.0002 (5) | 0.0069 (4) | 0.0022 (5) |
| C3 | 0.0377 (8) | 0.0240 (7) | 0.0382 (8) | 0.0084 (6) | 0.0238 (7) | 0.0095 (6) |
| C4 | 0.0175 (6) | 0.0182 (6) | 0.0162 (5) | −0.0002 (4) | 0.0069 (5) | 0.0005 (5) |
| C5 | 0.0199 (6) | 0.0217 (7) | 0.0153 (5) | −0.0035 (5) | 0.0019 (4) | 0.0003 (5) |
| C6 | 0.0185 (6) | 0.0209 (6) | 0.0194 (6) | −0.0042 (5) | 0.0053 (5) | 0.0000 (5) |
| C7 | 0.0186 (6) | 0.0156 (6) | 0.0159 (5) | −0.0025 (4) | 0.0058 (5) | −0.0017 (4) |
| C8 | 0.0244 (6) | 0.0189 (6) | 0.0193 (6) | −0.0004 (5) | 0.0090 (5) | −0.0041 (5) |
| C9 | 0.0218 (6) | 0.0169 (6) | 0.0214 (6) | −0.0017 (4) | 0.0083 (5) | 0.0003 (4) |
| C10 | 0.0252 (6) | 0.0161 (6) | 0.0207 (6) | 0.0034 (5) | 0.0084 (5) | 0.0027 (5) |
| C11 | 0.0220 (6) | 0.0212 (6) | 0.0150 (6) | 0.0017 (5) | 0.0057 (5) | 0.0010 (5) |
| C12 | 0.0184 (6) | 0.0170 (6) | 0.0147 (5) | 0.0011 (5) | 0.0063 (4) | −0.0024 (5) |
| C13 | 0.0166 (6) | 0.0269 (7) | 0.0189 (6) | 0.0014 (5) | 0.0054 (5) | −0.0025 (5) |
| C14 | 0.0147 (5) | 0.0168 (6) | 0.0147 (5) | −0.0004 (4) | 0.0067 (4) | −0.0020 (5) |
| C15 | 0.0167 (6) | 0.0133 (5) | 0.0141 (5) | −0.0008 (4) | 0.0065 (4) | −0.0027 (4) |
| C16 | 0.0161 (5) | 0.0196 (6) | 0.0186 (6) | −0.0007 (4) | 0.0072 (4) | 0.0017 (5) |
| C17 | 0.0166 (5) | 0.0157 (6) | 0.0182 (5) | −0.0002 (4) | 0.0045 (4) | 0.0013 (4) |
| C18 | 0.0186 (6) | 0.0196 (6) | 0.0197 (6) | −0.0010 (5) | 0.0054 (5) | −0.0006 (5) |
| C19 | 0.0265 (6) | 0.0251 (7) | 0.0232 (7) | −0.0012 (5) | 0.0088 (5) | −0.0056 (5) |
| C20 | 0.0199 (6) | 0.0232 (7) | 0.0333 (7) | −0.0044 (5) | 0.0113 (5) | −0.0041 (5) |
| O1—C1 | 1.3290 (16) | C9—C10 | 1.5236 (18) |
| O1—H1 | 0.85 (2) | C9—H9A | 0.9900 |
| O2—C1 | 1.2113 (16) | C9—H9B | 0.9900 |
| O3—C16 | 1.3586 (15) | C10—C11 | 1.5237 (18) |
| O3—C15 | 1.4689 (13) | C10—H10A | 0.9900 |
| O4—C16 | 1.2056 (16) | C10—H10B | 0.9900 |
| O5—C12 | 1.4530 (14) | C11—C12 | 1.5297 (17) |
| O5—H5 | 0.85 (2) | C11—H11A | 0.9900 |
| C1—C2 | 1.5021 (17) | C11—H11B | 0.9900 |
| C2—C3 | 1.322 (2) | C12—C13 | 1.5265 (16) |
| C2—C4 | 1.5175 (16) | C12—C14 | 1.5559 (15) |
| C3—H3A | 0.9500 | C13—H13A | 0.9800 |
| C3—H3B | 0.9500 | C13—H13B | 0.9800 |
| C4—C15 | 1.5365 (15) | C13—H13C | 0.9800 |
| C4—C5 | 1.5429 (17) | C14—C15 | 1.5325 (16) |
| C4—H4 | 1.0000 | C14—H14 | 1.0000 |
| C5—C6 | 1.5245 (17) | C15—H15 | 1.0000 |
| C5—H5A | 0.9900 | C16—C17 | 1.4885 (16) |
| C5—H5B | 0.9900 | C17—C18 | 1.3388 (18) |
| C6—C7 | 1.5394 (17) | C17—C20 | 1.5083 (17) |
| C6—H6A | 0.9900 | C18—C19 | 1.4920 (17) |
| C6—H6B | 0.9900 | C18—H18 | 0.9500 |
| C7—C9 | 1.5380 (17) | C19—H19A | 0.9800 |
| C7—C8 | 1.5428 (17) | C19—H19B | 0.9800 |
| C7—C14 | 1.5650 (16) | C19—H19C | 0.9800 |
| C8—H8A | 0.9800 | C20—H20A | 0.9800 |
| C8—H8B | 0.9800 | C20—H20B | 0.9800 |
| C8—H8C | 0.9800 | C20—H20C | 0.9800 |
| C1—O1—H1 | 108.4 (15) | H10A—C10—H10B | 108.2 |
| C16—O3—C15 | 118.15 (9) | C10—C11—C12 | 113.36 (10) |
| C12—O5—H5 | 110.5 (14) | C10—C11—H11A | 108.9 |
| O2—C1—O1 | 122.71 (12) | C12—C11—H11A | 108.9 |
| O2—C1—C2 | 123.53 (12) | C10—C11—H11B | 108.9 |
| O1—C1—C2 | 113.74 (11) | C12—C11—H11B | 108.9 |
| C3—C2—C1 | 116.90 (12) | H11A—C11—H11B | 107.7 |
| C3—C2—C4 | 121.14 (12) | O5—C12—C13 | 107.20 (10) |
| C1—C2—C4 | 121.84 (11) | O5—C12—C11 | 103.42 (9) |
| C2—C3—H3A | 120.0 | C13—C12—C11 | 111.83 (11) |
| C2—C3—H3B | 120.0 | O5—C12—C14 | 109.15 (9) |
| H3A—C3—H3B | 120.0 | C13—C12—C14 | 114.71 (9) |
| C2—C4—C15 | 114.03 (10) | C11—C12—C14 | 109.86 (10) |
| C2—C4—C5 | 111.84 (10) | C12—C13—H13A | 109.5 |
| C15—C4—C5 | 111.54 (10) | C12—C13—H13B | 109.5 |
| C2—C4—H4 | 106.3 | H13A—C13—H13B | 109.5 |
| C15—C4—H4 | 106.3 | C12—C13—H13C | 109.5 |
| C5—C4—H4 | 106.3 | H13A—C13—H13C | 109.5 |
| C6—C5—C4 | 111.93 (10) | H13B—C13—H13C | 109.5 |
| C6—C5—H5A | 109.2 | C15—C14—C12 | 115.48 (9) |
| C4—C5—H5A | 109.2 | C15—C14—C7 | 108.91 (9) |
| C6—C5—H5B | 109.2 | C12—C14—C7 | 115.86 (10) |
| C4—C5—H5B | 109.2 | C15—C14—H14 | 105.1 |
| H5A—C5—H5B | 107.9 | C12—C14—H14 | 105.1 |
| C5—C6—C7 | 113.06 (10) | C7—C14—H14 | 105.1 |
| C5—C6—H6A | 109.0 | O3—C15—C14 | 107.48 (8) |
| C7—C6—H6A | 109.0 | O3—C15—C4 | 107.10 (9) |
| C5—C6—H6B | 109.0 | C14—C15—C4 | 111.08 (9) |
| C7—C6—H6B | 109.0 | O3—C15—H15 | 110.4 |
| H6A—C6—H6B | 107.8 | C14—C15—H15 | 110.4 |
| C6—C7—C9 | 108.48 (10) | C4—C15—H15 | 110.4 |
| C6—C7—C8 | 109.08 (10) | O4—C16—O3 | 123.23 (11) |
| C9—C7—C8 | 108.57 (10) | O4—C16—C17 | 124.06 (11) |
| C6—C7—C14 | 106.28 (10) | O3—C16—C17 | 112.67 (10) |
| C9—C7—C14 | 109.85 (9) | C18—C17—C16 | 120.16 (11) |
| C8—C7—C14 | 114.42 (10) | C18—C17—C20 | 126.28 (12) |
| C7—C8—H8A | 109.5 | C16—C17—C20 | 113.55 (11) |
| C7—C8—H8B | 109.5 | C17—C18—C19 | 127.40 (12) |
| H8A—C8—H8B | 109.5 | C17—C18—H18 | 116.3 |
| C7—C8—H8C | 109.5 | C19—C18—H18 | 116.3 |
| H8A—C8—H8C | 109.5 | C18—C19—H19A | 109.5 |
| H8B—C8—H8C | 109.5 | C18—C19—H19B | 109.5 |
| C10—C9—C7 | 112.67 (10) | H19A—C19—H19B | 109.5 |
| C10—C9—H9A | 109.1 | C18—C19—H19C | 109.5 |
| C7—C9—H9A | 109.1 | H19A—C19—H19C | 109.5 |
| C10—C9—H9B | 109.1 | H19B—C19—H19C | 109.5 |
| C7—C9—H9B | 109.1 | C17—C20—H20A | 109.5 |
| H9A—C9—H9B | 107.8 | C17—C20—H20B | 109.5 |
| C11—C10—C9 | 109.70 (10) | H20A—C20—H20B | 109.5 |
| C11—C10—H10A | 109.7 | C17—C20—H20C | 109.5 |
| C9—C10—H10A | 109.7 | H20A—C20—H20C | 109.5 |
| C11—C10—H10B | 109.7 | H20B—C20—H20C | 109.5 |
| C9—C10—H10B | 109.7 | ||
| O2—C1—C2—C3 | −7.2 (2) | C13—C12—C14—C7 | −79.68 (14) |
| O1—C1—C2—C3 | 171.30 (13) | C11—C12—C14—C7 | 47.30 (13) |
| O2—C1—C2—C4 | 176.65 (13) | C6—C7—C14—C15 | 63.08 (12) |
| O1—C1—C2—C4 | −4.81 (17) | C9—C7—C14—C15 | −179.76 (9) |
| C3—C2—C4—C15 | 120.75 (14) | C8—C7—C14—C15 | −57.36 (13) |
| C1—C2—C4—C15 | −63.31 (15) | C6—C7—C14—C12 | −164.75 (10) |
| C3—C2—C4—C5 | −111.53 (15) | C9—C7—C14—C12 | −47.59 (13) |
| C1—C2—C4—C5 | 64.41 (15) | C8—C7—C14—C12 | 74.81 (13) |
| C2—C4—C5—C6 | −178.17 (10) | C16—O3—C15—C14 | −137.12 (10) |
| C15—C4—C5—C6 | −49.13 (14) | C16—O3—C15—C4 | 103.46 (11) |
| C4—C5—C6—C7 | 53.90 (14) | C12—C14—C15—O3 | 48.75 (12) |
| C5—C6—C7—C9 | −178.02 (10) | C7—C14—C15—O3 | −178.88 (8) |
| C5—C6—C7—C8 | 63.89 (13) | C12—C14—C15—C4 | 165.60 (9) |
| C5—C6—C7—C14 | −59.95 (13) | C7—C14—C15—C4 | −62.02 (12) |
| C6—C7—C9—C10 | 168.69 (10) | C2—C4—C15—O3 | −60.90 (12) |
| C8—C7—C9—C10 | −72.89 (13) | C5—C4—C15—O3 | 171.23 (9) |
| C14—C7—C9—C10 | 52.92 (13) | C2—C4—C15—C14 | −177.99 (10) |
| C7—C9—C10—C11 | −59.35 (14) | C5—C4—C15—C14 | 54.14 (12) |
| C9—C10—C11—C12 | 59.45 (14) | C15—O3—C16—O4 | −1.68 (17) |
| C10—C11—C12—O5 | −169.09 (10) | C15—O3—C16—C17 | 176.10 (9) |
| C10—C11—C12—C13 | 75.89 (13) | O4—C16—C17—C18 | −168.19 (13) |
| C10—C11—C12—C14 | −52.68 (13) | O3—C16—C17—C18 | 14.06 (16) |
| O5—C12—C14—C15 | −70.92 (12) | O4—C16—C17—C20 | 12.88 (18) |
| C13—C12—C14—C15 | 49.37 (14) | O3—C16—C17—C20 | −164.88 (11) |
| C11—C12—C14—C15 | 176.34 (9) | C16—C17—C18—C19 | −179.39 (12) |
| O5—C12—C14—C7 | 160.04 (9) | C20—C17—C18—C19 | −0.6 (2) |
| H··· | ||||
| O1—H1···O5i | 0.85 (2) | 1.80 (2) | 2.648 (1) | 174 (2) |
| O5—H5···O3 | 0.85 (2) | 1.99 (2) | 2.692 (1) | 139 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O5i | 0.85 (2) | 1.80 (2) | 2.648 (1) | 174 (2) |
| O5—H5⋯O3 | 0.85 (2) | 1.99 (2) | 2.692 (1) | 139 (2) |
Symmetry code: (i) .