Literature DB >> 22058783

rac-3,9-Bis(3-chloro-phen-yl)-2,4,8,10-tetra-oxaspiro-[5.5]undeca-ne.

Zhengyi Li1, Beibei Zhou, Liang Chen, Ling Ge, Xiaoqiang Sun.   

Abstract

In the title compound, C(19)H(18)Cl(2)O(4), the two non-planar six-membered heterocycles passing through the spiro-C atom both adopt chair conformations, and the dihedral angle between the two benzene rings is 7.2 (1)°. In the crystal, the enanti-omers with R and S configurations are generated by the symmetry elements of the centrosymmetric space group, forming a racemic crystal. Inter-molecular C-H⋯π and weak C-H⋯O inter-actions link the mol-ecules in the crystal structure.

Entities:  

Year:  2011        PMID: 22058783      PMCID: PMC3201504          DOI: 10.1107/S1600536811037172

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to spiranes, see: Cismaş et al. (2005 ▶); Mihiş et al. (2008 ▶); Sun et al. (2010 ▶).

Experimental

Crystal data

C19H18Cl2O4 M = 381.23 Monoclinic, a = 13.0924 (13) Å b = 5.8473 (6) Å c = 23.061 (2) Å β = 92.865 (2)° V = 1763.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.39 mm−1 T = 296 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.892, T max = 0.926 9216 measured reflections 3083 independent reflections 2669 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.091 S = 1.01 3083 reflections 227 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811037172/kp2345sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037172/kp2345Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037172/kp2345Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18Cl2O4F(000) = 792
Mr = 381.23Dx = 1.436 Mg m3
Monoclinic, P21/cMelting point: 397 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 13.0924 (13) ÅCell parameters from 5568 reflections
b = 5.8473 (6) Åθ = 2.4–30.2°
c = 23.061 (2) ŵ = 0.39 mm1
β = 92.865 (2)°T = 296 K
V = 1763.2 (3) Å3PRISM, colourless
Z = 40.30 × 0.20 × 0.20 mm
Bruker APEXII CCD diffractometer3083 independent reflections
Radiation source: fine-focus sealed tube2669 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −15→15
Tmin = 0.892, Tmax = 0.926k = −6→6
9216 measured reflectionsl = −27→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.045P)2 + 0.585P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
3083 reflectionsΔρmax = 0.23 e Å3
227 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0101 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.44666 (4)−0.09142 (9)0.42374 (2)0.06281 (18)
Cl20.60790 (4)0.03575 (11)0.87193 (2)0.0707 (2)
C101.00108 (11)−0.0663 (3)0.63687 (6)0.0355 (3)
C71.18050 (11)0.0270 (3)0.57866 (6)0.0381 (4)
H71.2282−0.06460.60320.046*
C130.81522 (11)0.0410 (3)0.68608 (6)0.0367 (3)
H130.7765−0.07900.66500.044*
C140.74431 (11)0.1662 (3)0.72470 (6)0.0365 (3)
C61.23665 (11)0.1316 (3)0.52994 (6)0.0360 (3)
C91.08461 (12)0.0975 (3)0.65948 (7)0.0437 (4)
H9A1.05440.21770.68200.052*
H9B1.13330.01540.68480.052*
C120.91461 (12)0.0658 (3)0.60524 (6)0.0426 (4)
H12A0.94310.17150.57790.051*
H12B0.8704−0.04010.58350.051*
C190.71569 (12)0.0629 (3)0.77554 (7)0.0407 (4)
H190.7439−0.07670.78710.049*
C180.64487 (12)0.1693 (3)0.80883 (7)0.0452 (4)
C11.31014 (11)−0.0007 (3)0.50473 (7)0.0383 (3)
H11.3269−0.14420.51980.046*
C110.95635 (13)−0.2022 (3)0.68599 (7)0.0466 (4)
H11A0.9156−0.32740.66970.056*
H11B1.0116−0.26700.71030.056*
C150.70256 (13)0.3758 (3)0.70861 (8)0.0475 (4)
H150.72170.44650.67470.057*
C21.35834 (12)0.0819 (3)0.45714 (7)0.0413 (4)
C81.04953 (14)−0.2341 (3)0.59572 (8)0.0479 (4)
H8A1.0958−0.33460.61780.057*
H8B0.9965−0.32760.57680.057*
C31.33736 (13)0.2967 (3)0.43493 (7)0.0471 (4)
H31.37160.35200.40350.057*
C51.21370 (13)0.3469 (3)0.50771 (7)0.0451 (4)
H51.16450.43680.52440.054*
C170.60229 (13)0.3780 (3)0.79319 (8)0.0533 (5)
H170.55460.44770.81600.064*
C41.26424 (14)0.4277 (3)0.46054 (8)0.0505 (4)
H41.24870.57240.44590.061*
C160.63242 (14)0.4803 (3)0.74285 (9)0.0567 (5)
H160.60520.62160.73180.068*
O30.89369 (8)−0.06191 (19)0.72093 (4)0.0415 (3)
O11.10447 (8)−0.11743 (19)0.55266 (5)0.0421 (3)
O40.85569 (8)0.1908 (2)0.64567 (4)0.0429 (3)
O21.13674 (8)0.19688 (19)0.61245 (5)0.0441 (3)
U11U22U33U12U13U23
Cl10.0534 (3)0.0747 (4)0.0629 (3)0.0064 (2)0.0281 (2)−0.0002 (2)
Cl20.0728 (3)0.0869 (4)0.0552 (3)−0.0017 (3)0.0312 (2)0.0047 (3)
C100.0400 (8)0.0339 (8)0.0332 (7)0.0029 (6)0.0077 (6)−0.0012 (6)
C70.0375 (8)0.0435 (9)0.0333 (8)0.0046 (7)0.0032 (6)−0.0027 (6)
C130.0374 (8)0.0396 (8)0.0333 (8)−0.0012 (6)0.0030 (6)−0.0001 (6)
C140.0320 (7)0.0410 (8)0.0365 (8)−0.0008 (6)0.0015 (6)−0.0031 (6)
C60.0364 (8)0.0403 (8)0.0314 (7)−0.0037 (6)0.0015 (6)−0.0043 (6)
C90.0440 (8)0.0575 (10)0.0301 (8)−0.0008 (8)0.0061 (6)−0.0084 (7)
C120.0412 (8)0.0578 (10)0.0293 (7)0.0037 (7)0.0056 (6)0.0027 (7)
C190.0395 (8)0.0414 (9)0.0415 (8)−0.0005 (7)0.0050 (7)−0.0017 (7)
C180.0392 (8)0.0554 (10)0.0417 (9)−0.0061 (8)0.0099 (7)−0.0063 (7)
C10.0373 (8)0.0393 (8)0.0384 (8)−0.0006 (7)0.0029 (6)0.0014 (6)
C110.0546 (10)0.0402 (9)0.0467 (9)0.0128 (8)0.0180 (7)0.0077 (7)
C150.0473 (9)0.0479 (10)0.0478 (9)0.0060 (8)0.0067 (7)0.0053 (8)
C20.0353 (8)0.0496 (9)0.0394 (8)−0.0052 (7)0.0057 (6)−0.0027 (7)
C80.0592 (10)0.0354 (9)0.0511 (9)−0.0028 (8)0.0229 (8)−0.0051 (7)
C30.0516 (9)0.0505 (10)0.0395 (8)−0.0119 (8)0.0049 (7)0.0046 (7)
C50.0533 (9)0.0393 (9)0.0426 (9)0.0041 (7)0.0032 (7)−0.0061 (7)
C170.0423 (9)0.0600 (11)0.0587 (11)0.0058 (8)0.0130 (8)−0.0143 (9)
C40.0662 (11)0.0379 (9)0.0471 (9)−0.0035 (8)0.0004 (8)0.0042 (7)
C160.0528 (10)0.0491 (10)0.0686 (12)0.0148 (9)0.0065 (9)−0.0016 (9)
O30.0461 (6)0.0455 (6)0.0338 (5)0.0124 (5)0.0106 (5)0.0071 (5)
O10.0510 (6)0.0384 (6)0.0382 (6)−0.0059 (5)0.0149 (5)−0.0094 (5)
O40.0453 (6)0.0475 (6)0.0369 (6)0.0117 (5)0.0112 (5)0.0103 (5)
O20.0475 (6)0.0464 (6)0.0395 (6)−0.0082 (5)0.0139 (5)−0.0138 (5)
Cl1—C21.7456 (16)C12—H12B0.9700
Cl2—C181.7413 (17)C19—C181.381 (2)
C10—C111.524 (2)C19—H190.9300
C10—C81.525 (2)C18—C171.382 (3)
C10—C91.526 (2)C1—C21.380 (2)
C10—C121.526 (2)C1—H10.9300
C7—O21.4026 (18)C11—O31.4356 (18)
C7—O11.4153 (19)C11—H11A0.9700
C7—C61.503 (2)C11—H11B0.9700
C7—H70.9800C15—C161.383 (2)
C13—O41.4019 (18)C15—H150.9300
C13—O31.4074 (18)C2—C31.379 (2)
C13—C141.508 (2)C8—O11.4285 (19)
C13—H130.9800C8—H8A0.9700
C14—C151.385 (2)C8—H8B0.9700
C14—C191.387 (2)C3—C41.382 (2)
C6—C11.385 (2)C3—H30.9300
C6—C51.387 (2)C5—C41.384 (2)
C9—O21.4332 (19)C5—H50.9300
C9—H9A0.9700C17—C161.381 (3)
C9—H9B0.9700C17—H170.9300
C12—O41.4388 (18)C4—H40.9300
C12—H12A0.9700C16—H160.9300
C11—C10—C8108.33 (13)C17—C18—Cl2119.26 (13)
C11—C10—C9111.63 (14)C2—C1—C6119.55 (15)
C8—C10—C9107.65 (13)C2—C1—H1120.2
C11—C10—C12108.41 (13)C6—C1—H1120.2
C8—C10—C12110.49 (13)O3—C11—C10111.77 (12)
C9—C10—C12110.32 (14)O3—C11—H11A109.3
O2—C7—O1111.08 (12)C10—C11—H11A109.3
O2—C7—C6110.82 (13)O3—C11—H11B109.3
O1—C7—C6106.63 (12)C10—C11—H11B109.3
O2—C7—H7109.4H11A—C11—H11B107.9
O1—C7—H7109.4C16—C15—C14120.17 (16)
C6—C7—H7109.4C16—C15—H15119.9
O4—C13—O3110.93 (12)C14—C15—H15119.9
O4—C13—C14110.70 (12)C3—C2—C1121.58 (15)
O3—C13—C14108.89 (12)C3—C2—Cl1119.28 (12)
O4—C13—H13108.8C1—C2—Cl1119.14 (13)
O3—C13—H13108.8O1—C8—C10111.40 (13)
C14—C13—H13108.8O1—C8—H8A109.3
C15—C14—C19119.48 (15)C10—C8—H8A109.3
C15—C14—C13121.20 (14)O1—C8—H8B109.3
C19—C14—C13119.21 (14)C10—C8—H8B109.3
C1—C6—C5119.62 (14)H8A—C8—H8B108.0
C1—C6—C7117.54 (14)C2—C3—C4118.41 (15)
C5—C6—C7122.74 (14)C2—C3—H3120.8
O2—C9—C10110.88 (12)C4—C3—H3120.8
O2—C9—H9A109.5C4—C5—C6119.81 (16)
C10—C9—H9A109.5C4—C5—H5120.1
O2—C9—H9B109.5C6—C5—H5120.1
C10—C9—H9B109.5C16—C17—C18118.26 (16)
H9A—C9—H9B108.1C16—C17—H17120.9
O4—C12—C10110.87 (12)C18—C17—H17120.9
O4—C12—H12A109.5C3—C4—C5121.02 (16)
C10—C12—H12A109.5C3—C4—H4119.5
O4—C12—H12B109.5C5—C4—H4119.5
C10—C12—H12B109.5C17—C16—C15120.94 (17)
H12A—C12—H12B108.1C17—C16—H16119.5
C18—C19—C14119.40 (15)C15—C16—H16119.5
C18—C19—H19120.3C13—O3—C11110.19 (12)
C14—C19—H19120.3C7—O1—C8111.00 (12)
C19—C18—C17121.73 (16)C13—O4—C12110.26 (12)
C19—C18—Cl2119.00 (14)C7—O2—C9110.87 (12)
O4—C13—C14—C1519.0 (2)C6—C1—C2—Cl1−177.16 (11)
O3—C13—C14—C15141.19 (15)C11—C10—C8—O1−172.53 (14)
O4—C13—C14—C19−164.95 (13)C9—C10—C8—O1−51.68 (18)
O3—C13—C14—C19−42.74 (18)C12—C10—C8—O168.85 (18)
O2—C7—C6—C1159.48 (13)C1—C2—C3—C4−1.7 (2)
O1—C7—C6—C1−79.51 (16)Cl1—C2—C3—C4177.45 (13)
O2—C7—C6—C5−24.2 (2)C1—C6—C5—C40.1 (2)
O1—C7—C6—C596.80 (17)C7—C6—C5—C4−176.16 (15)
C11—C10—C9—O2170.89 (12)C19—C18—C17—C16−0.1 (3)
C8—C10—C9—O252.13 (17)Cl2—C18—C17—C16−179.73 (15)
C12—C10—C9—O2−68.50 (16)C2—C3—C4—C50.6 (3)
C11—C10—C12—O450.16 (18)C6—C5—C4—C30.2 (3)
C8—C10—C12—O4168.73 (13)C18—C17—C16—C150.7 (3)
C9—C10—C12—O4−72.36 (16)C14—C15—C16—C17−0.4 (3)
C15—C14—C19—C180.9 (2)O4—C13—O3—C11−63.94 (16)
C13—C14—C19—C18−175.20 (14)C14—C13—O3—C11173.99 (12)
C14—C19—C18—C17−0.7 (2)C10—C11—O3—C1356.69 (18)
C14—C19—C18—Cl2178.92 (12)O2—C7—O1—C8−61.88 (16)
C5—C6—C1—C2−1.1 (2)C6—C7—O1—C8177.28 (12)
C7—C6—C1—C2175.31 (14)C10—C8—O1—C757.07 (18)
C8—C10—C11—O3−169.67 (13)O3—C13—O4—C1264.98 (15)
C9—C10—C11—O371.97 (18)C14—C13—O4—C12−174.01 (11)
C12—C10—C11—O3−49.75 (18)C10—C12—O4—C13−58.23 (16)
C19—C14—C15—C16−0.4 (3)O1—C7—O2—C962.62 (16)
C13—C14—C15—C16175.67 (16)C6—C7—O2—C9−179.05 (12)
C6—C1—C2—C32.0 (2)C10—C9—O2—C7−58.53 (16)
Cg1 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
C12—H12B···Cg1i0.972.703.632 (2)162.
C9—H9A···O3ii0.972.643.402 (2)135.
C11—H11B···O3iii0.972.613.530 (2)158.
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12BCg1i0.972.703.632 (2)162
C9—H9A⋯O3ii0.972.643.402 (2)135
C11—H11B⋯O3iii0.972.613.530 (2)158

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and structure of new 3,3,9,9-tetrasubstituted-2,4,8,10-tetraoxaspiro[5.5]undecane derivatives.

Authors:  Alin Mihiş; Eric Condamine; Elena Bogdan; Anamaria Terec; Tibor Kurtán; Ion Grosu
Journal:  Molecules       Date:  2008-11-17       Impact factor: 4.411

  2 in total

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