Literature DB >> 22058781

(2E)-1-(5-Chloro-thio-phen-2-yl)-3-(2,3-dimeth-oxy-phen-yl)prop-2-en-1-one.

A N Prabhu, A Jayarama, Ravish Sankolli, T N Guru Row, V Upadhyaya.   

Abstract

In the title compound, C(15)H(13)ClO(3)S, the chloro-thio-phene and dimeth-oxy-phenyl groups are linked by a prop-2-en-1-one group. The C=C double bond exhibits an E conformation. The mol-ecule is non-planar, with a dihedral angle of 31.12 (5)° between the chloro-thio-phene and dimeth-oxy-phenyl rings. The meth-oxy group at position 3 is coplanar with the benzene ring to which it is attached, with a C-O-C-C torsion angle of -3.8 (3)°. The meth-oxy group attached at position 2 of the benzene ring is in a (+)synclinal conformation, as indicated by the C-O-C-C torsion angle of -73.6 (2)°. In the crystal, two different C-H⋯O inter-molecular inter-actions generate chains of mol-ecules extending along the b axis.

Entities:  

Year:  2011        PMID: 22058781      PMCID: PMC3201439          DOI: 10.1107/S1600536811037135

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to chalcones and their biological properties, see: Choudary et al. (1999 ▶); Tomazela et al. (2000 ▶). For a related structure, see: Benmekhbi et al. (2009 ▶).

Experimental

Crystal data

C15H13ClO3S M = 308.76 Monoclinic, a = 11.6139 (8) Å b = 8.5605 (5) Å c = 14.4174 (9) Å β = 99.907 (2)° V = 1412.02 (16) Å3 Z = 4 Mo Kα radiation μ = 0.42 mm−1 T = 296 K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.920, T max = 0.936 9286 measured reflections 3087 independent reflections 2348 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.102 S = 1.07 3087 reflections 183 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037135/pv2439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037135/pv2439Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037135/pv2439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13ClO3SF(000) = 640
Mr = 308.76Dx = 1.452 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3087 reflections
a = 11.6139 (8) Åθ = 1.8–27.0°
b = 8.5605 (5) ŵ = 0.42 mm1
c = 14.4174 (9) ÅT = 296 K
β = 99.907 (2)°Block, yellow
V = 1412.02 (16) Å30.20 × 0.18 × 0.16 mm
Z = 4
Bruker SMART APEX CCD detector diffractometer3087 independent reflections
Radiation source: fine-focus sealed tube2348 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −14→14
Tmin = 0.920, Tmax = 0.936k = −8→10
9286 measured reflectionsl = −18→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0494P)2 + 0.1854P] where P = (Fo2 + 2Fc2)/3
3087 reflections(Δ/σ)max = 0.001
183 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.22862 (5)0.40719 (7)1.17836 (4)0.06157 (19)
S10.33583 (4)0.57846 (6)1.03539 (3)0.04070 (15)
O10.46583 (12)0.75106 (18)0.91191 (10)0.0540 (4)
O20.80027 (11)0.99907 (15)0.81682 (8)0.0413 (3)
O30.97557 (11)1.20940 (17)0.83929 (10)0.0509 (4)
C10.33815 (16)0.5228 (2)1.14971 (13)0.0387 (4)
C20.43004 (17)0.5799 (2)1.21037 (13)0.0451 (5)
H20.44400.56081.27480.054*
C30.50212 (16)0.6722 (2)1.16311 (13)0.0427 (5)
H30.56970.72101.19360.051*
C40.46355 (14)0.6834 (2)1.06827 (12)0.0358 (4)
C50.51284 (15)0.7641 (2)0.99432 (13)0.0384 (4)
C60.61819 (15)0.8604 (2)1.02313 (13)0.0407 (4)
H60.64420.87911.08680.049*
C70.67724 (15)0.9214 (2)0.96006 (13)0.0382 (4)
H70.65090.89490.89750.046*
C80.77860 (15)1.0250 (2)0.97828 (12)0.0357 (4)
C90.82092 (16)1.0873 (2)1.06805 (13)0.0431 (5)
H90.78571.05921.11880.052*
C100.91330 (17)1.1886 (3)1.08140 (14)0.0485 (5)
H100.94061.22801.14130.058*
C110.96713 (16)1.2336 (2)1.00634 (14)0.0466 (5)
H111.02931.30361.01610.056*
C120.92801 (15)1.1742 (2)0.91742 (13)0.0396 (4)
C130.83426 (15)1.0682 (2)0.90333 (12)0.0347 (4)
C140.73927 (19)1.0981 (3)0.74504 (15)0.0540 (6)
H14C0.66141.11590.75660.081*
H14B0.73581.04880.68480.081*
H14A0.77961.19600.74540.081*
C151.0673 (2)1.3220 (3)0.84993 (18)0.0660 (7)
H15C1.04071.41740.87420.099*
H15A1.08961.34160.78990.099*
H15B1.13341.28290.89290.099*
U11U22U33U12U13U23
Cl10.0603 (3)0.0672 (4)0.0591 (4)−0.0213 (3)0.0158 (3)0.0057 (3)
S10.0417 (3)0.0445 (3)0.0344 (3)−0.00324 (19)0.00221 (18)0.0015 (2)
O10.0592 (8)0.0645 (10)0.0361 (8)−0.0086 (7)0.0025 (6)0.0093 (7)
O20.0537 (7)0.0392 (8)0.0328 (7)0.0012 (6)0.0124 (6)−0.0022 (6)
O30.0484 (8)0.0632 (10)0.0446 (8)−0.0134 (7)0.0174 (6)0.0012 (7)
C10.0436 (10)0.0360 (10)0.0382 (10)−0.0011 (8)0.0122 (8)0.0004 (8)
C20.0542 (11)0.0497 (13)0.0315 (9)−0.0044 (9)0.0074 (8)−0.0008 (9)
C30.0438 (10)0.0453 (12)0.0374 (10)−0.0059 (8)0.0026 (8)−0.0015 (9)
C40.0362 (9)0.0339 (10)0.0377 (10)0.0025 (7)0.0078 (7)−0.0004 (8)
C50.0405 (9)0.0382 (11)0.0370 (10)0.0060 (8)0.0084 (8)0.0046 (8)
C60.0443 (10)0.0441 (11)0.0343 (10)−0.0009 (8)0.0087 (8)0.0013 (8)
C70.0438 (10)0.0370 (11)0.0349 (9)0.0048 (8)0.0101 (8)0.0029 (8)
C80.0373 (9)0.0365 (10)0.0339 (9)0.0061 (7)0.0078 (7)0.0024 (8)
C90.0453 (10)0.0518 (13)0.0333 (9)0.0036 (9)0.0100 (8)0.0032 (9)
C100.0472 (11)0.0616 (14)0.0350 (10)0.0001 (10)0.0019 (8)−0.0040 (9)
C110.0388 (10)0.0536 (13)0.0462 (12)−0.0048 (8)0.0042 (8)−0.0020 (10)
C120.0374 (9)0.0438 (12)0.0394 (10)0.0033 (8)0.0116 (8)0.0039 (9)
C130.0381 (9)0.0337 (10)0.0332 (9)0.0049 (7)0.0083 (7)−0.0010 (8)
C140.0607 (13)0.0573 (14)0.0412 (11)0.0048 (10)0.0009 (9)0.0042 (10)
C150.0583 (13)0.0776 (18)0.0665 (16)−0.0211 (12)0.0230 (11)0.0056 (13)
Cl1—C11.7173 (19)C7—C81.461 (3)
S1—C11.7115 (19)C7—H70.9300
S1—C41.7292 (18)C8—C131.401 (2)
O1—C51.224 (2)C8—C91.408 (3)
O2—C131.376 (2)C9—C101.367 (3)
O2—C141.428 (2)C9—H90.9300
O3—C121.371 (2)C10—C111.394 (3)
O3—C151.425 (2)C10—H100.9300
C1—C21.350 (3)C11—C121.381 (3)
C2—C31.409 (3)C11—H110.9300
C2—H20.9300C12—C131.405 (3)
C3—C41.367 (2)C14—H14C0.9600
C3—H30.9300C14—H14B0.9600
C4—C51.467 (2)C14—H14A0.9600
C5—C61.474 (3)C15—H15C0.9600
C6—C71.336 (3)C15—H15A0.9600
C6—H60.9300C15—H15B0.9600
C1—S1—C490.57 (9)C10—C9—C8120.74 (18)
C13—O2—C14115.51 (15)C10—C9—H9119.6
C12—O3—C15117.37 (17)C8—C9—H9119.6
C2—C1—S1113.76 (14)C9—C10—C11120.79 (18)
C2—C1—Cl1126.07 (15)C9—C10—H10119.6
S1—C1—Cl1120.16 (11)C11—C10—H10119.6
C1—C2—C3111.04 (17)C12—C11—C10119.92 (19)
C1—C2—H2124.5C12—C11—H11120.0
C3—C2—H2124.5C10—C11—H11120.0
C4—C3—C2113.79 (17)O3—C12—C11124.53 (17)
C4—C3—H3123.1O3—C12—C13115.79 (16)
C2—C3—H3123.1C11—C12—C13119.67 (17)
C3—C4—C5131.18 (17)O2—C13—C8119.14 (16)
C3—C4—S1110.84 (14)O2—C13—C12120.23 (16)
C5—C4—S1117.97 (13)C8—C13—C12120.53 (17)
O1—C5—C4119.86 (17)O2—C14—H14C109.5
O1—C5—C6122.29 (18)O2—C14—H14B109.5
C4—C5—C6117.85 (16)H14C—C14—H14B109.5
C7—C6—C5121.68 (17)O2—C14—H14A109.5
C7—C6—H6119.2H14C—C14—H14A109.5
C5—C6—H6119.2H14B—C14—H14A109.5
C6—C7—C8127.37 (18)O3—C15—H15C109.5
C6—C7—H7116.3O3—C15—H15A109.5
C8—C7—H7116.3H15C—C15—H15A109.5
C13—C8—C9118.32 (17)O3—C15—H15B109.5
C13—C8—C7119.08 (16)H15C—C15—H15B109.5
C9—C8—C7122.57 (17)H15A—C15—H15B109.5
C4—S1—C1—C20.09 (17)C13—C8—C9—C100.6 (3)
C4—S1—C1—Cl1179.16 (12)C7—C8—C9—C10−177.48 (18)
S1—C1—C2—C3−0.1 (2)C8—C9—C10—C110.5 (3)
Cl1—C1—C2—C3−179.14 (15)C9—C10—C11—C12−0.8 (3)
C1—C2—C3—C40.1 (3)C15—O3—C12—C11−3.8 (3)
C2—C3—C4—C5−178.76 (19)C15—O3—C12—C13177.16 (18)
C2—C3—C4—S1−0.1 (2)C10—C11—C12—O3−179.22 (18)
C1—S1—C4—C3−0.02 (15)C10—C11—C12—C13−0.2 (3)
C1—S1—C4—C5178.87 (15)C14—O2—C13—C8109.94 (19)
C3—C4—C5—O1176.0 (2)C14—O2—C13—C12−73.6 (2)
S1—C4—C5—O1−2.6 (2)C9—C8—C13—O2174.84 (15)
C3—C4—C5—C6−4.6 (3)C7—C8—C13—O2−7.0 (2)
S1—C4—C5—C6176.79 (13)C9—C8—C13—C12−1.6 (3)
O1—C5—C6—C7−9.3 (3)C7—C8—C13—C12176.61 (16)
C4—C5—C6—C7171.31 (17)O3—C12—C13—O24.1 (3)
C5—C6—C7—C8176.47 (17)C11—C12—C13—O2−175.02 (16)
C6—C7—C8—C13175.42 (18)O3—C12—C13—C8−179.52 (16)
C6—C7—C8—C9−6.5 (3)C11—C12—C13—C81.4 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.932.533.209 (2)130
C15—H15A···O2ii0.962.553.423 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.932.533.209 (2)130
C15—H15A⋯O2ii0.962.553.423 (3)151

Symmetry codes: (i) ; (ii) .

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Authors:  D M Tomazela; M T Pupo; E A Passador; M F da Silva; P C Vieira; J B Fernandes; E R Fo; G Oliva; J R Pirani
Journal:  Phytochemistry       Date:  2000-11       Impact factor: 4.072

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-3-(2,6-Dichloro-phen-yl)-1-(4-methoxy-phen-yl)prop-2-en-1-one.

Authors:  Lotfi Benmekhbi; Ratiba Belhouas; Sofiane Bouacida; Salima Mosbah; Leila Bencharif
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06
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1.  The crystal structures of six (2E)-3-aryl-1-(5-halogeno-thio-phen-2-yl)prop-2-en-1-ones.

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-26
  1 in total

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