| Literature DB >> 22058768 |
Artur Korzański, Paweł Wagner, Maciej Kubicki.
Abstract
In the crystal structure of the title compound, C(11)H(9)ClN(4)O(3), pairs of N-H⋯N(imidazole) hydrogen bonds connect the mol-ecules into centrosymmetric dimers, which are further connected by N-H⋯O(carbamo-yl) hydrogen bonds into C(4) chains along [010]. Inter-play of these two kinds of hydrogen bonds connect the mol-ecules into layers perpendicular to [101]. The imidazole [maximum deviation 0.0069 (9) Å] and phenyl rings are inclined at a dihedral angle of 58.44 (6)°; the nitro group is almost coplanar [dihedral angle 5.8 (2)°] with the imidazole ring while the carbamoyl group is almost perpendicular [70.15 (13)°] to it.Entities:
Year: 2011 PMID: 22058768 PMCID: PMC3201265 DOI: 10.1107/S1600536811036609
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9ClN4O3 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 1970 reflections |
| θ = 2.6–27.8° | |
| µ = 0.32 mm−1 | |
| β = 108.680 (7)° | Plate, colourless |
| 0.25 × 0.2 × 0.08 mm | |
| Agilent Xcalibur Sapphire2 diffractometer | 2702 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2185 reflections with |
| graphite | |
| Detector resolution: 8.1929 pixels mm-1 | θmax = 27.9°, θmin = 2.8° |
| ω–scan | |
| Absorption correction: multi-scan ( | |
| 4943 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2702 reflections | (Δ/σ)max < 0.001 |
| 197 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.17359 (6) | 0.85257 (17) | 0.33362 (8) | 0.0271 (3) | |
| C11 | 0.12098 (7) | 0.8118 (2) | 0.25590 (9) | 0.0293 (3) | |
| C12 | 0.09423 (8) | 0.6397 (2) | 0.24501 (11) | 0.0332 (4) | |
| H12 | 0.1077 (9) | 0.552 (3) | 0.2894 (12) | 0.037 (5)* | |
| C13 | 0.04732 (8) | 0.6004 (2) | 0.16645 (11) | 0.0379 (4) | |
| Cl13 | 0.01602 (3) | 0.38209 (7) | 0.14854 (4) | 0.05910 (19) | |
| C14 | 0.02578 (10) | 0.7283 (3) | 0.10197 (12) | 0.0504 (5) | |
| H14 | −0.0065 (11) | 0.699 (3) | 0.0509 (15) | 0.064 (7)* | |
| C15 | 0.05307 (10) | 0.8993 (3) | 0.11556 (13) | 0.0560 (6) | |
| H15 | 0.0382 (12) | 0.991 (4) | 0.0733 (17) | 0.072 (7)* | |
| C16 | 0.10138 (9) | 0.9419 (3) | 0.19203 (12) | 0.0415 (4) | |
| H16 | 0.1217 (10) | 1.055 (3) | 0.2009 (13) | 0.046 (5)* | |
| C2 | 0.17800 (8) | 0.9965 (2) | 0.38931 (10) | 0.0305 (3) | |
| C21 | 0.12317 (10) | 1.1186 (3) | 0.38571 (14) | 0.0502 (5) | |
| H21A | 0.1342 | 1.1920 | 0.4372 | 0.075* | |
| H21B | 0.0856 | 1.0473 | 0.3821 | 0.075* | |
| H21C | 0.1142 | 1.1955 | 0.3355 | 0.075* | |
| N3 | 0.23569 (7) | 1.00575 (17) | 0.44768 (8) | 0.0310 (3) | |
| C4 | 0.26864 (7) | 0.8643 (2) | 0.42808 (9) | 0.0266 (3) | |
| N4 | 0.33550 (7) | 0.83535 (19) | 0.47546 (8) | 0.0339 (3) | |
| O41 | 0.36067 (7) | 0.9295 (2) | 0.53941 (9) | 0.0568 (4) | |
| O42 | 0.36375 (6) | 0.7157 (2) | 0.44992 (9) | 0.0543 (4) | |
| C5 | 0.23205 (7) | 0.76476 (19) | 0.35908 (9) | 0.0249 (3) | |
| C51 | 0.24424 (7) | 0.5998 (2) | 0.31274 (9) | 0.0267 (3) | |
| O51 | 0.24669 (7) | 0.61445 (15) | 0.23864 (7) | 0.0387 (3) | |
| N51 | 0.24967 (7) | 0.44533 (19) | 0.35555 (9) | 0.0342 (3) | |
| H51A | 0.2520 (9) | 0.444 (3) | 0.4089 (13) | 0.039 (5)* | |
| H51B | 0.2552 (9) | 0.346 (3) | 0.3297 (12) | 0.037 (5)* |
| N1 | 0.0274 (6) | 0.0263 (6) | 0.0261 (6) | 0.0018 (5) | 0.0067 (5) | −0.0005 (5) |
| C11 | 0.0257 (7) | 0.0328 (8) | 0.0273 (7) | 0.0001 (6) | 0.0054 (6) | −0.0001 (6) |
| C12 | 0.0332 (8) | 0.0334 (8) | 0.0308 (8) | −0.0010 (7) | 0.0071 (7) | 0.0005 (7) |
| C13 | 0.0336 (9) | 0.0394 (9) | 0.0379 (9) | −0.0081 (7) | 0.0073 (7) | −0.0065 (7) |
| Cl13 | 0.0610 (3) | 0.0487 (3) | 0.0575 (3) | −0.0197 (2) | 0.0048 (3) | −0.0114 (2) |
| C14 | 0.0399 (10) | 0.0630 (13) | 0.0362 (10) | −0.0071 (9) | −0.0046 (8) | 0.0027 (9) |
| C15 | 0.0496 (12) | 0.0587 (13) | 0.0426 (10) | −0.0043 (10) | −0.0093 (9) | 0.0181 (10) |
| C16 | 0.0367 (9) | 0.0388 (10) | 0.0409 (9) | −0.0040 (8) | 0.0012 (7) | 0.0092 (8) |
| C2 | 0.0370 (8) | 0.0255 (7) | 0.0299 (7) | 0.0026 (6) | 0.0118 (6) | −0.0003 (6) |
| C21 | 0.0482 (11) | 0.0447 (11) | 0.0579 (12) | 0.0155 (9) | 0.0174 (9) | −0.0052 (9) |
| N3 | 0.0387 (7) | 0.0269 (7) | 0.0272 (6) | 0.0012 (6) | 0.0103 (6) | −0.0035 (5) |
| C4 | 0.0303 (8) | 0.0266 (7) | 0.0215 (6) | 0.0000 (6) | 0.0066 (6) | 0.0000 (6) |
| N4 | 0.0332 (7) | 0.0368 (7) | 0.0279 (6) | −0.0020 (6) | 0.0045 (6) | −0.0023 (6) |
| O41 | 0.0461 (8) | 0.0674 (9) | 0.0430 (7) | −0.0046 (7) | −0.0050 (6) | −0.0219 (7) |
| O42 | 0.0351 (7) | 0.0607 (9) | 0.0597 (8) | 0.0109 (6) | 0.0049 (6) | −0.0182 (7) |
| C5 | 0.0278 (7) | 0.0243 (7) | 0.0219 (6) | 0.0008 (6) | 0.0071 (6) | 0.0016 (5) |
| C51 | 0.0283 (7) | 0.0257 (7) | 0.0245 (7) | 0.0003 (6) | 0.0062 (6) | −0.0027 (6) |
| O51 | 0.0627 (8) | 0.0305 (6) | 0.0268 (6) | 0.0056 (6) | 0.0196 (5) | 0.0008 (5) |
| N51 | 0.0530 (9) | 0.0239 (7) | 0.0266 (7) | 0.0029 (6) | 0.0142 (6) | −0.0014 (6) |
| N1—C5 | 1.3719 (19) | C2—C21 | 1.484 (2) |
| N1—C2 | 1.3774 (19) | C21—H21A | 0.9600 |
| N1—C11 | 1.4408 (19) | C21—H21B | 0.9600 |
| C11—C16 | 1.377 (2) | C21—H21C | 0.9600 |
| C11—C12 | 1.384 (2) | N3—C4 | 1.361 (2) |
| C12—C13 | 1.388 (2) | C4—C5 | 1.364 (2) |
| C12—H12 | 0.94 (2) | C4—N4 | 1.432 (2) |
| C13—C14 | 1.376 (3) | N4—O42 | 1.2228 (19) |
| C13—Cl13 | 1.7360 (18) | N4—O41 | 1.2236 (18) |
| C14—C15 | 1.381 (3) | C5—C51 | 1.498 (2) |
| C14—H14 | 0.93 (2) | C51—O51 | 1.2270 (18) |
| C15—C16 | 1.384 (3) | C51—N51 | 1.319 (2) |
| C15—H15 | 0.94 (3) | N51—H51A | 0.85 (2) |
| C16—H16 | 0.93 (2) | N51—H51B | 0.87 (2) |
| C2—N3 | 1.314 (2) | ||
| C5—N1—C2 | 107.62 (12) | N1—C2—C21 | 123.73 (15) |
| C5—N1—C11 | 124.74 (12) | C2—C21—H21A | 109.5 |
| C2—N1—C11 | 127.22 (13) | C2—C21—H21B | 109.5 |
| C16—C11—C12 | 121.72 (15) | H21A—C21—H21B | 109.5 |
| C16—C11—N1 | 118.89 (15) | C2—C21—H21C | 109.5 |
| C12—C11—N1 | 119.27 (14) | H21A—C21—H21C | 109.5 |
| C11—C12—C13 | 117.78 (15) | H21B—C21—H21C | 109.5 |
| C11—C12—H12 | 121.0 (11) | C2—N3—C4 | 104.35 (13) |
| C13—C12—H12 | 121.2 (11) | N3—C4—C5 | 112.95 (14) |
| C14—C13—C12 | 121.94 (17) | N3—C4—N4 | 120.85 (13) |
| C14—C13—Cl13 | 119.18 (14) | C5—C4—N4 | 126.15 (14) |
| C12—C13—Cl13 | 118.87 (14) | O42—N4—O41 | 123.99 (15) |
| C13—C14—C15 | 118.62 (17) | O42—N4—C4 | 117.62 (13) |
| C13—C14—H14 | 119.8 (15) | O41—N4—C4 | 118.38 (14) |
| C15—C14—H14 | 121.6 (15) | C4—C5—N1 | 103.76 (13) |
| C14—C15—C16 | 121.11 (18) | C4—C5—C51 | 134.27 (14) |
| C14—C15—H15 | 120.4 (15) | N1—C5—C51 | 121.97 (13) |
| C16—C15—H15 | 118.5 (15) | O51—C51—N51 | 124.64 (14) |
| C11—C16—C15 | 118.79 (18) | O51—C51—C5 | 119.48 (13) |
| C11—C16—H16 | 119.2 (13) | N51—C51—C5 | 115.84 (13) |
| C15—C16—H16 | 122.0 (12) | C51—N51—H51A | 121.0 (14) |
| N3—C2—N1 | 111.31 (14) | C51—N51—H51B | 118.4 (12) |
| N3—C2—C21 | 124.90 (15) | H51A—N51—H51B | 120.2 (19) |
| C5—N1—C11—C16 | −115.99 (18) | C21—C2—N3—C4 | 177.36 (16) |
| C2—N1—C11—C16 | 55.6 (2) | C2—N3—C4—C5 | −0.99 (17) |
| C5—N1—C11—C12 | 60.0 (2) | C2—N3—C4—N4 | 176.64 (14) |
| C2—N1—C11—C12 | −128.44 (17) | N3—C4—N4—O42 | −173.81 (15) |
| C16—C11—C12—C13 | 1.1 (3) | C5—C4—N4—O42 | 3.5 (2) |
| N1—C11—C12—C13 | −174.80 (15) | N3—C4—N4—O41 | 7.2 (2) |
| C11—C12—C13—C14 | −2.3 (3) | C5—C4—N4—O41 | −175.54 (15) |
| C11—C12—C13—Cl13 | 176.52 (12) | N3—C4—C5—N1 | 1.33 (17) |
| C12—C13—C14—C15 | 1.6 (3) | N4—C4—C5—N1 | −176.15 (14) |
| Cl13—C13—C14—C15 | −177.23 (17) | N3—C4—C5—C51 | −179.51 (15) |
| C13—C14—C15—C16 | 0.4 (3) | N4—C4—C5—C51 | 3.0 (3) |
| C12—C11—C16—C15 | 0.8 (3) | C2—N1—C5—C4 | −1.11 (15) |
| N1—C11—C16—C15 | 176.73 (17) | C11—N1—C5—C4 | 171.84 (13) |
| C14—C15—C16—C11 | −1.6 (3) | C2—N1—C5—C51 | 179.59 (13) |
| C5—N1—C2—N3 | 0.58 (17) | C11—N1—C5—C51 | −7.5 (2) |
| C11—N1—C2—N3 | −172.15 (14) | C4—C5—C51—O51 | −110.4 (2) |
| C5—N1—C2—C21 | −176.59 (16) | N1—C5—C51—O51 | 68.6 (2) |
| C11—N1—C2—C21 | 10.7 (2) | C4—C5—C51—N51 | 71.6 (2) |
| N1—C2—N3—C4 | 0.23 (17) | N1—C5—C51—N51 | −109.36 (17) |
| H··· | ||||
| N51—H51A···N3i | 0.85 (2) | 2.29 (2) | 3.130 (2) | 169.2 (18) |
| N51—H51B···O51ii | 0.87 (2) | 2.03 (2) | 2.8938 (19) | 171.3 (18) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N51—H51 | 0.85 (2) | 2.29 (2) | 3.130 (2) | 169.2 (18) |
| N51—H51 | 0.87 (2) | 2.03 (2) | 2.8938 (19) | 171.3 (18) |
Symmetry codes: (i) ; (ii) .