Literature DB >> 22058765

1-(2-Amino-eth-yl)-3-phenyl-thio-urea.

Pramod Pansuriya1, Holger B Friedrich, Glenn E M Maguire.   

Abstract

In the crystal structure of the title compound, C(9)H(13)N(3)S, mol-ecules are linked through N-H⋯S and N-H⋯N hydrogen bonds, forming hydrogen-bonded tapes along the b axis. The dihedral angle between the phenyl ring and the thiourea group is 44.9 (2)°.

Entities:  

Year:  2011        PMID: 22058765      PMCID: PMC3201383          DOI: 10.1107/S1600536811036476

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compund, see: Lee et al. (1985 ▶). For applications of thio­ureas, see: Tommasino et al. (1999 ▶, 2000 ▶); Leung et al. (2008 ▶). For similar structures, see: Guo (2007 ▶); Okino et al. (2005 ▶).

Experimental

Crystal data

C9H13N3S M = 195.28 Monoclinic, a = 8.5105 (2) Å b = 11.5644 (3) Å c = 9.9829 (3) Å β = 93.580 (1)° V = 980.59 (5) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.52 × 0.51 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer 11919 measured reflections 2365 independent reflections 1893 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.088 S = 1.05 2365 reflections 134 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811036476/fy2013sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036476/fy2013Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036476/fy2013Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H13N3SF(000) = 416
Mr = 195.28Dx = 1.323 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4309 reflections
a = 8.5105 (2) Åθ = 2.4–28.3°
b = 11.5644 (3) ŵ = 0.29 mm1
c = 9.9829 (3) ÅT = 173 K
β = 93.580 (1)°Plate, colourless
V = 980.59 (5) Å30.52 × 0.51 × 0.25 mm
Z = 4
Bruker APEXII CCD diffractometer1893 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.042
graphiteθmax = 28.0°, θmin = 2.4°
φ and ω scansh = −11→11
11919 measured reflectionsk = −15→15
2365 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0456P)2 + 0.1114P] where P = (Fo2 + 2Fc2)/3
2365 reflections(Δ/σ)max = 0.001
134 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.70454 (14)0.28612 (11)−0.12947 (13)0.0231 (3)
C20.67903 (16)0.18764 (12)−0.20730 (13)0.0276 (3)
H20.57810.1523−0.21390.033*
C30.80133 (18)0.14084 (13)−0.27550 (14)0.0337 (3)
H30.78420.0726−0.32730.040*
C40.94801 (17)0.19291 (15)−0.26863 (15)0.0384 (4)
H41.03110.1611−0.31620.046*
C50.97292 (15)0.29189 (15)−0.19184 (15)0.0349 (4)
H51.07340.3280−0.18720.042*
C60.85235 (14)0.33857 (13)−0.12171 (14)0.0279 (3)
H60.87040.4060−0.06860.033*
C70.46708 (13)0.29317 (11)0.00584 (13)0.0232 (3)
C80.35806 (15)0.12066 (11)0.11161 (14)0.0258 (3)
H8A0.32100.17450.18000.031*
H8B0.41090.05490.15930.031*
C90.21718 (15)0.07587 (12)0.02639 (14)0.0283 (3)
H9A0.14270.03790.08480.034*
H9B0.16200.1415−0.01960.034*
N10.58075 (12)0.34090 (10)−0.06492 (12)0.0252 (3)
N20.47210 (12)0.18047 (9)0.03209 (11)0.0235 (2)
S10.32346 (4)0.38159 (3)0.06009 (4)0.02980 (13)
N30.26714 (14)−0.00755 (11)−0.07427 (13)0.0323 (3)
H1N0.5828 (17)0.4185 (15)−0.0621 (15)0.031 (4)*
H2N0.5532 (17)0.1426 (13)0.0186 (15)0.027 (4)*
H3NA0.298 (2)0.0311 (17)−0.147 (2)0.056 (6)*
H3NB0.186 (2)−0.0499 (16)−0.1047 (18)0.049 (5)*
U11U22U33U12U13U23
C10.0229 (6)0.0241 (7)0.0226 (6)0.0037 (5)0.0050 (5)0.0048 (5)
C20.0300 (7)0.0281 (7)0.0253 (7)0.0017 (5)0.0051 (5)0.0027 (6)
C30.0454 (8)0.0328 (8)0.0237 (7)0.0089 (6)0.0090 (6)0.0002 (6)
C40.0348 (8)0.0516 (10)0.0301 (8)0.0151 (7)0.0128 (6)0.0063 (7)
C50.0222 (6)0.0520 (10)0.0310 (8)0.0032 (6)0.0065 (5)0.0080 (7)
C60.0246 (6)0.0333 (8)0.0260 (7)−0.0006 (5)0.0036 (5)0.0032 (6)
C70.0203 (6)0.0219 (7)0.0275 (7)−0.0019 (5)0.0028 (5)−0.0025 (5)
C80.0274 (6)0.0219 (7)0.0287 (7)−0.0015 (5)0.0075 (5)0.0018 (5)
C90.0235 (6)0.0244 (7)0.0373 (8)0.0010 (5)0.0047 (5)0.0031 (6)
N10.0227 (5)0.0176 (6)0.0362 (7)0.0001 (4)0.0095 (5)−0.0001 (5)
N20.0215 (5)0.0192 (6)0.0307 (6)0.0012 (4)0.0073 (4)0.0000 (5)
S10.02171 (17)0.0211 (2)0.0478 (2)0.00148 (12)0.01190 (14)−0.00020 (15)
N30.0303 (6)0.0302 (7)0.0362 (7)−0.0015 (5)−0.0006 (5)−0.0048 (6)
C1—C21.3881 (19)C7—N11.3509 (16)
C1—C61.3943 (17)C7—S11.7074 (12)
C1—N11.4181 (15)C8—N21.4651 (16)
C2—C31.3887 (19)C8—C91.5173 (19)
C2—H20.9500C8—H8A0.9900
C3—C41.384 (2)C8—H8B0.9900
C3—H30.9500C9—N31.4747 (18)
C4—C51.387 (2)C9—H9A0.9900
C4—H40.9500C9—H9B0.9900
C5—C61.3871 (18)N1—H1N0.898 (17)
C5—H50.9500N2—H2N0.836 (15)
C6—H60.9500N3—H3NA0.91 (2)
C7—N21.3296 (17)N3—H3NB0.882 (19)
C2—C1—C6119.80 (12)N2—C8—C9112.61 (11)
C2—C1—N1121.75 (11)N2—C8—H8A109.1
C6—C1—N1118.27 (12)C9—C8—H8A109.1
C1—C2—C3119.89 (13)N2—C8—H8B109.1
C1—C2—H2120.1C9—C8—H8B109.1
C3—C2—H2120.1H8A—C8—H8B107.8
C4—C3—C2120.50 (14)N3—C9—C8110.73 (10)
C4—C3—H3119.7N3—C9—H9A109.5
C2—C3—H3119.7C8—C9—H9A109.5
C3—C4—C5119.53 (13)N3—C9—H9B109.5
C3—C4—H4120.2C8—C9—H9B109.5
C5—C4—H4120.2H9A—C9—H9B108.1
C4—C5—C6120.53 (13)C7—N1—C1129.17 (11)
C4—C5—H5119.7C7—N1—H1N113.9 (9)
C6—C5—H5119.7C1—N1—H1N116.5 (9)
C5—C6—C1119.73 (14)C7—N2—C8123.73 (11)
C5—C6—H6120.1C7—N2—H2N119.9 (10)
C1—C6—H6120.1C8—N2—H2N115.0 (10)
N2—C7—N1119.23 (11)C9—N3—H3NA109.6 (12)
N2—C7—S1122.64 (9)C9—N3—H3NB110.3 (11)
N1—C7—S1118.12 (10)H3NA—N3—H3NB104.6 (17)
C6—C1—C2—C30.9 (2)N2—C8—C9—N360.48 (15)
N1—C1—C2—C3176.02 (12)N2—C7—N1—C16.3 (2)
C1—C2—C3—C4−1.3 (2)S1—C7—N1—C1−174.59 (10)
C2—C3—C4—C50.7 (2)C2—C1—N1—C744.9 (2)
C3—C4—C5—C60.3 (2)C6—C1—N1—C7−139.94 (14)
C4—C5—C6—C1−0.6 (2)N1—C7—N2—C8177.90 (12)
C2—C1—C6—C50.0 (2)S1—C7—N2—C8−1.17 (18)
N1—C1—C6—C5−175.28 (12)C9—C8—N2—C789.72 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S1i0.898 (17)2.445 (17)3.3108 (12)162.0 (12)
N2—H2N···N3ii0.836 (15)2.232 (15)2.9974 (16)152.5 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯S1i0.898 (17)2.445 (17)3.3108 (12)162.0 (12)
N2—H2N⋯N3ii0.836 (15)2.232 (15)2.9974 (16)152.5 (13)

Symmetry codes: (i) ; (ii) .

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