Literature DB >> 22058754

Ethyl 4-[3-(1H-imidazol-1-yl)propyl-amino]-3-nitro-benzoate.

Yeong Keng Yoon, Mohamed Ashraf Ali, Tan Soo Choon, Wan-Sin Loh, Hoong-Kun Fun.   

Abstract

In the title compound, C(15)H(18)N(4)O(4), the 1H-imidazole ring forms a dihedral angle of 67.12 (8)° with the benzene ring. An S(6) ring motif is formed via an intra-molecular N-H⋯O hydrogen bond. In the crystal, neighbouring mol-ecules are linked by a pair of inter-molecular N-H⋯N hydrogen bonds, forming an inversion dimer. The dimers are further linked by a pair of C-H⋯O hydrogen bonds, leading to the formation of chain along [021]. A C-H⋯π inter-action involving the centroid of the benzene ring is also observed between the chains.

Entities:  

Year:  2011        PMID: 22058754      PMCID: PMC3201243          DOI: 10.1107/S1600536811036300

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of phenyl­enediamines, see: Sabelle (2006 ▶); Glebowska et al. (2009 ▶); Remusat et al. (2004 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H18N4O4 M = 318.33 Triclinic, a = 8.4860 (4) Å b = 8.6175 (4) Å c = 11.7507 (6) Å α = 77.489 (1)° β = 81.732 (1)° γ = 67.977 (1)° V = 775.83 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 297 K 0.43 × 0.37 × 0.23 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.958, T max = 0.978 15358 measured reflections 4470 independent reflections 3627 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.173 S = 1.05 4470 reflections 213 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036300/is2771sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036300/is2771Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036300/is2771Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H18N4O4Z = 2
Mr = 318.33F(000) = 336
Triclinic, P1Dx = 1.363 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4860 (4) ÅCell parameters from 6626 reflections
b = 8.6175 (4) Åθ = 2.6–32.5°
c = 11.7507 (6) ŵ = 0.10 mm1
α = 77.489 (1)°T = 297 K
β = 81.732 (1)°Block, yellow
γ = 67.977 (1)°0.43 × 0.37 × 0.23 mm
V = 775.83 (7) Å3
Bruker SMART APEXII DUO CCD area-detector diffractometer4470 independent reflections
Radiation source: fine-focus sealed tube3627 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 30.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.958, Tmax = 0.978k = −11→12
15358 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.173H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.1056P)2 + 0.1039P] where P = (Fo2 + 2Fc2)/3
4470 reflections(Δ/σ)max = 0.001
213 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.70039 (15)1.08819 (19)0.76638 (14)0.0819 (4)
O20.66111 (13)0.92725 (15)0.66648 (11)0.0630 (3)
O30.28465 (12)1.36380 (12)1.04716 (9)0.0495 (2)
O40.04276 (15)1.30975 (15)1.09224 (9)0.0602 (3)
N10.39536 (14)0.82823 (14)0.71627 (10)0.0439 (3)
N20.16593 (13)0.56169 (13)0.55424 (9)0.0411 (2)
N30.32584 (19)0.38579 (17)0.43667 (11)0.0598 (3)
N40.61326 (13)1.01531 (14)0.74276 (10)0.0457 (3)
C10.1987 (2)0.4015 (2)0.61436 (12)0.0579 (4)
H1A0.16130.37020.69120.069*
C20.2965 (2)0.29595 (19)0.54111 (13)0.0586 (4)
H2A0.33760.17790.56010.070*
C30.2444 (2)0.5452 (2)0.44782 (13)0.0605 (4)
H3A0.24150.63680.38830.073*
C40.06090 (17)0.72024 (18)0.59566 (13)0.0511 (3)
H4A0.00240.69340.67020.061*
H4B−0.02490.78780.54060.061*
C50.16440 (18)0.82458 (16)0.60979 (12)0.0487 (3)
H5A0.08790.93130.63180.058*
H5B0.22400.85050.53550.058*
C60.29333 (16)0.73156 (15)0.70181 (11)0.0423 (3)
H6A0.23320.70640.77600.051*
H6B0.36860.62420.68010.051*
C70.34741 (14)0.94586 (14)0.78555 (10)0.0364 (2)
C80.18281 (16)0.98950 (16)0.84576 (11)0.0432 (3)
H8A0.10760.94080.83270.052*
C90.13241 (16)1.10113 (16)0.92231 (11)0.0435 (3)
H9A0.02381.12610.95980.052*
C100.23935 (15)1.17874 (14)0.94578 (10)0.0383 (2)
C110.39749 (15)1.14588 (14)0.88549 (10)0.0379 (2)
H11A0.46951.19850.89820.045*
C120.44984 (14)1.03452 (14)0.80583 (10)0.0361 (2)
C130.17697 (17)1.28977 (15)1.03544 (10)0.0417 (3)
C140.22780 (19)1.47706 (18)1.13211 (12)0.0512 (3)
H14A0.24021.41151.21070.061*
H14B0.10871.54751.12450.061*
C150.3332 (3)1.5847 (2)1.10987 (17)0.0705 (5)
H15A0.29721.66121.16480.106*
H15B0.32031.64881.03190.106*
H15C0.45061.51401.11850.106*
H1N10.495 (2)0.808 (2)0.6809 (15)0.058 (5)*
U11U22U33U12U13U23
O10.0597 (7)0.1035 (10)0.1167 (11)−0.0523 (7)0.0326 (7)−0.0724 (9)
O20.0512 (5)0.0719 (7)0.0792 (7)−0.0281 (5)0.0258 (5)−0.0497 (6)
O30.0513 (5)0.0525 (5)0.0546 (5)−0.0209 (4)0.0062 (4)−0.0319 (4)
O40.0660 (6)0.0713 (7)0.0563 (6)−0.0357 (5)0.0245 (5)−0.0365 (5)
N10.0431 (5)0.0441 (5)0.0525 (6)−0.0187 (4)0.0085 (4)−0.0272 (4)
N20.0406 (5)0.0477 (5)0.0404 (5)−0.0169 (4)0.0025 (4)−0.0202 (4)
N30.0698 (8)0.0594 (7)0.0533 (7)−0.0226 (6)0.0142 (6)−0.0296 (6)
N40.0406 (5)0.0446 (5)0.0577 (6)−0.0183 (4)0.0090 (4)−0.0235 (5)
C10.0748 (9)0.0574 (8)0.0400 (6)−0.0233 (7)0.0052 (6)−0.0120 (6)
C20.0720 (9)0.0480 (7)0.0528 (8)−0.0128 (6)−0.0063 (7)−0.0170 (6)
C30.0832 (10)0.0545 (8)0.0434 (7)−0.0261 (7)0.0163 (7)−0.0186 (6)
C40.0396 (6)0.0556 (7)0.0600 (8)−0.0093 (5)−0.0002 (5)−0.0302 (6)
C50.0544 (7)0.0413 (6)0.0514 (7)−0.0126 (5)−0.0025 (5)−0.0194 (5)
C60.0470 (6)0.0380 (5)0.0482 (6)−0.0172 (5)0.0019 (5)−0.0203 (5)
C70.0416 (5)0.0336 (5)0.0368 (5)−0.0146 (4)0.0032 (4)−0.0133 (4)
C80.0458 (6)0.0454 (6)0.0478 (6)−0.0245 (5)0.0110 (5)−0.0215 (5)
C90.0470 (6)0.0436 (6)0.0454 (6)−0.0221 (5)0.0132 (5)−0.0193 (5)
C100.0463 (6)0.0359 (5)0.0357 (5)−0.0165 (4)0.0053 (4)−0.0144 (4)
C110.0416 (5)0.0356 (5)0.0407 (5)−0.0157 (4)0.0012 (4)−0.0143 (4)
C120.0373 (5)0.0344 (5)0.0386 (5)−0.0136 (4)0.0043 (4)−0.0136 (4)
C130.0500 (6)0.0406 (6)0.0379 (5)−0.0179 (5)0.0047 (4)−0.0159 (4)
C140.0616 (8)0.0506 (7)0.0481 (7)−0.0195 (6)0.0019 (6)−0.0275 (5)
C150.0860 (12)0.0714 (10)0.0742 (10)−0.0428 (9)0.0087 (9)−0.0364 (8)
O1—N41.2251 (15)C5—C61.5217 (19)
O2—N41.2261 (14)C5—H5A0.9700
O3—C131.3313 (15)C5—H5B0.9700
O3—C141.4533 (14)C6—H6A0.9700
O4—C131.2067 (16)C6—H6B0.9700
N1—C71.3449 (13)C7—C81.4249 (16)
N1—C61.4551 (15)C7—C121.4257 (15)
N1—H1N10.856 (19)C8—C91.3686 (15)
N2—C31.3395 (16)C8—H8A0.9300
N2—C11.3518 (19)C9—C101.3978 (17)
N2—C41.4657 (15)C9—H9A0.9300
N3—C31.3120 (19)C10—C111.3826 (16)
N3—C21.346 (2)C10—C131.4840 (15)
N4—C121.4440 (15)C11—C121.3944 (14)
C1—C21.351 (2)C11—H11A0.9300
C1—H1A0.9300C14—C151.476 (2)
C2—H2A0.9300C14—H14A0.9700
C3—H3A0.9300C14—H14B0.9700
C4—C51.5186 (19)C15—H15A0.9600
C4—H4A0.9700C15—H15B0.9600
C4—H4B0.9700C15—H15C0.9600
C13—O3—C14115.30 (10)C5—C6—H6B108.9
C7—N1—C6124.49 (10)H6A—C6—H6B107.8
C7—N1—H1N1116.5 (12)N1—C7—C8119.86 (10)
C6—N1—H1N1119.0 (12)N1—C7—C12125.14 (10)
C3—N2—C1105.75 (12)C8—C7—C12115.00 (9)
C3—N2—C4127.17 (12)C9—C8—C7121.81 (11)
C1—N2—C4127.05 (11)C9—C8—H8A119.1
C3—N3—C2104.48 (12)C7—C8—H8A119.1
O1—N4—O2121.58 (11)C8—C9—C10121.93 (11)
O1—N4—C12119.17 (10)C8—C9—H9A119.0
O2—N4—C12119.25 (10)C10—C9—H9A119.0
C2—C1—N2106.62 (13)C11—C10—C9118.24 (10)
C2—C1—H1A126.7C11—C10—C13123.90 (11)
N2—C1—H1A126.7C9—C10—C13117.86 (10)
N3—C2—C1110.43 (13)C10—C11—C12120.55 (11)
N3—C2—H2A124.8C10—C11—H11A119.7
C1—C2—H2A124.8C12—C11—H11A119.7
N3—C3—N2112.72 (13)C11—C12—C7122.29 (10)
N3—C3—H3A123.6C11—C12—N4116.41 (10)
N2—C3—H3A123.6C7—C12—N4121.29 (9)
N2—C4—C5112.73 (10)O4—C13—O3123.64 (11)
N2—C4—H4A109.0O4—C13—C10123.26 (11)
C5—C4—H4A109.0O3—C13—C10113.10 (10)
N2—C4—H4B109.0O3—C14—C15108.04 (12)
C5—C4—H4B109.0O3—C14—H14A110.1
H4A—C4—H4B107.8C15—C14—H14A110.1
C4—C5—C6112.09 (11)O3—C14—H14B110.1
C4—C5—H5A109.2C15—C14—H14B110.1
C6—C5—H5A109.2H14A—C14—H14B108.4
C4—C5—H5B109.2C14—C15—H15A109.5
C6—C5—H5B109.2C14—C15—H15B109.5
H5A—C5—H5B107.9H15A—C15—H15B109.5
N1—C6—C5113.19 (11)C14—C15—H15C109.5
N1—C6—H6A108.9H15A—C15—H15C109.5
C5—C6—H6A108.9H15B—C15—H15C109.5
N1—C6—H6B108.9
C3—N2—C1—C20.29 (18)C9—C10—C11—C12−1.70 (18)
C4—N2—C1—C2178.23 (13)C13—C10—C11—C12177.37 (10)
C3—N3—C2—C1−0.4 (2)C10—C11—C12—C7−2.12 (18)
N2—C1—C2—N30.0 (2)C10—C11—C12—N4176.86 (11)
C2—N3—C3—N20.6 (2)N1—C7—C12—C11−175.11 (11)
C1—N2—C3—N3−0.5 (2)C8—C7—C12—C114.66 (17)
C4—N2—C3—N3−178.48 (13)N1—C7—C12—N45.96 (19)
C3—N2—C4—C5−70.00 (19)C8—C7—C12—N4−174.27 (11)
C1—N2—C4—C5112.49 (16)O1—N4—C12—C114.07 (19)
N2—C4—C5—C6−62.97 (15)O2—N4—C12—C11−175.55 (12)
C7—N1—C6—C585.02 (15)O1—N4—C12—C7−176.93 (13)
C4—C5—C6—N1179.45 (10)O2—N4—C12—C73.44 (19)
C6—N1—C7—C8−3.56 (19)C14—O3—C13—O4−1.8 (2)
C6—N1—C7—C12176.19 (11)C14—O3—C13—C10178.66 (10)
N1—C7—C8—C9176.17 (12)C11—C10—C13—O4−175.61 (13)
C12—C7—C8—C9−3.61 (18)C9—C10—C13—O43.5 (2)
C7—C8—C9—C100.0 (2)C11—C10—C13—O33.97 (18)
C8—C9—C10—C112.76 (19)C9—C10—C13—O3−176.96 (11)
C8—C9—C10—C13−176.37 (12)C13—O3—C14—C15−163.51 (13)
Cg1 is the centroid of the C7–C12 benzene ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O20.859 (18)2.004 (18)2.6464 (18)130.9 (15)
N1—H1N1···N3i0.859 (18)2.345 (17)3.0281 (18)136.7 (15)
C15—H15A···O1ii0.962.473.346 (2)151
C1—H1A···Cg1iii0.932.903.5962 (16)132
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C7–C12 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O20.859 (18)2.004 (18)2.6464 (18)130.9 (15)
N1—H1N1⋯N3i0.859 (18)2.345 (17)3.0281 (18)136.7 (15)
C15—H15A⋯O1ii0.962.473.346 (2)151
C1—H1ACg1iii0.932.903.5962 (16)132

Symmetry codes: (i) ; (ii) ; (iii) .

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