| Literature DB >> 22058754 |
Yeong Keng Yoon, Mohamed Ashraf Ali, Tan Soo Choon, Wan-Sin Loh, Hoong-Kun Fun.
Abstract
In the title compound, C(15)H(18)N(4)O(4), the 1H-imidazole ring forms a dihedral angle of 67.12 (8)° with the benzene ring. An S(6) ring motif is formed via an intra-molecular N-H⋯O hydrogen bond. In the crystal, neighbouring mol-ecules are linked by a pair of inter-molecular N-H⋯N hydrogen bonds, forming an inversion dimer. The dimers are further linked by a pair of C-H⋯O hydrogen bonds, leading to the formation of chain along [021]. A C-H⋯π inter-action involving the centroid of the benzene ring is also observed between the chains.Entities:
Year: 2011 PMID: 22058754 PMCID: PMC3201243 DOI: 10.1107/S1600536811036300
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H18N4O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 6626 reflections | |
| θ = 2.6–32.5° | |
| µ = 0.10 mm−1 | |
| α = 77.489 (1)° | |
| β = 81.732 (1)° | Block, yellow |
| γ = 67.977 (1)° | 0.43 × 0.37 × 0.23 mm |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 4470 independent reflections |
| Radiation source: fine-focus sealed tube | 3627 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 15358 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4470 reflections | (Δ/σ)max = 0.001 |
| 213 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.70039 (15) | 1.08819 (19) | 0.76638 (14) | 0.0819 (4) | |
| O2 | 0.66111 (13) | 0.92725 (15) | 0.66648 (11) | 0.0630 (3) | |
| O3 | 0.28465 (12) | 1.36380 (12) | 1.04716 (9) | 0.0495 (2) | |
| O4 | 0.04276 (15) | 1.30975 (15) | 1.09224 (9) | 0.0602 (3) | |
| N1 | 0.39536 (14) | 0.82823 (14) | 0.71627 (10) | 0.0439 (3) | |
| N2 | 0.16593 (13) | 0.56169 (13) | 0.55424 (9) | 0.0411 (2) | |
| N3 | 0.32584 (19) | 0.38579 (17) | 0.43667 (11) | 0.0598 (3) | |
| N4 | 0.61326 (13) | 1.01531 (14) | 0.74276 (10) | 0.0457 (3) | |
| C1 | 0.1987 (2) | 0.4015 (2) | 0.61436 (12) | 0.0579 (4) | |
| H1A | 0.1613 | 0.3702 | 0.6912 | 0.069* | |
| C2 | 0.2965 (2) | 0.29595 (19) | 0.54111 (13) | 0.0586 (4) | |
| H2A | 0.3376 | 0.1779 | 0.5601 | 0.070* | |
| C3 | 0.2444 (2) | 0.5452 (2) | 0.44782 (13) | 0.0605 (4) | |
| H3A | 0.2415 | 0.6368 | 0.3883 | 0.073* | |
| C4 | 0.06090 (17) | 0.72024 (18) | 0.59566 (13) | 0.0511 (3) | |
| H4A | 0.0024 | 0.6934 | 0.6702 | 0.061* | |
| H4B | −0.0249 | 0.7878 | 0.5406 | 0.061* | |
| C5 | 0.16440 (18) | 0.82458 (16) | 0.60979 (12) | 0.0487 (3) | |
| H5A | 0.0879 | 0.9313 | 0.6318 | 0.058* | |
| H5B | 0.2240 | 0.8505 | 0.5355 | 0.058* | |
| C6 | 0.29333 (16) | 0.73156 (15) | 0.70181 (11) | 0.0423 (3) | |
| H6A | 0.2332 | 0.7064 | 0.7760 | 0.051* | |
| H6B | 0.3686 | 0.6242 | 0.6801 | 0.051* | |
| C7 | 0.34741 (14) | 0.94586 (14) | 0.78555 (10) | 0.0364 (2) | |
| C8 | 0.18281 (16) | 0.98950 (16) | 0.84576 (11) | 0.0432 (3) | |
| H8A | 0.1076 | 0.9408 | 0.8327 | 0.052* | |
| C9 | 0.13241 (16) | 1.10113 (16) | 0.92231 (11) | 0.0435 (3) | |
| H9A | 0.0238 | 1.1261 | 0.9598 | 0.052* | |
| C10 | 0.23935 (15) | 1.17874 (14) | 0.94578 (10) | 0.0383 (2) | |
| C11 | 0.39749 (15) | 1.14588 (14) | 0.88549 (10) | 0.0379 (2) | |
| H11A | 0.4695 | 1.1985 | 0.8982 | 0.045* | |
| C12 | 0.44984 (14) | 1.03452 (14) | 0.80583 (10) | 0.0361 (2) | |
| C13 | 0.17697 (17) | 1.28977 (15) | 1.03544 (10) | 0.0417 (3) | |
| C14 | 0.22780 (19) | 1.47706 (18) | 1.13211 (12) | 0.0512 (3) | |
| H14A | 0.2402 | 1.4115 | 1.2107 | 0.061* | |
| H14B | 0.1087 | 1.5475 | 1.1245 | 0.061* | |
| C15 | 0.3332 (3) | 1.5847 (2) | 1.10987 (17) | 0.0705 (5) | |
| H15A | 0.2972 | 1.6612 | 1.1648 | 0.106* | |
| H15B | 0.3203 | 1.6488 | 1.0319 | 0.106* | |
| H15C | 0.4506 | 1.5140 | 1.1185 | 0.106* | |
| H1N1 | 0.495 (2) | 0.808 (2) | 0.6809 (15) | 0.058 (5)* |
| O1 | 0.0597 (7) | 0.1035 (10) | 0.1167 (11) | −0.0523 (7) | 0.0326 (7) | −0.0724 (9) |
| O2 | 0.0512 (5) | 0.0719 (7) | 0.0792 (7) | −0.0281 (5) | 0.0258 (5) | −0.0497 (6) |
| O3 | 0.0513 (5) | 0.0525 (5) | 0.0546 (5) | −0.0209 (4) | 0.0062 (4) | −0.0319 (4) |
| O4 | 0.0660 (6) | 0.0713 (7) | 0.0563 (6) | −0.0357 (5) | 0.0245 (5) | −0.0365 (5) |
| N1 | 0.0431 (5) | 0.0441 (5) | 0.0525 (6) | −0.0187 (4) | 0.0085 (4) | −0.0272 (4) |
| N2 | 0.0406 (5) | 0.0477 (5) | 0.0404 (5) | −0.0169 (4) | 0.0025 (4) | −0.0202 (4) |
| N3 | 0.0698 (8) | 0.0594 (7) | 0.0533 (7) | −0.0226 (6) | 0.0142 (6) | −0.0296 (6) |
| N4 | 0.0406 (5) | 0.0446 (5) | 0.0577 (6) | −0.0183 (4) | 0.0090 (4) | −0.0235 (5) |
| C1 | 0.0748 (9) | 0.0574 (8) | 0.0400 (6) | −0.0233 (7) | 0.0052 (6) | −0.0120 (6) |
| C2 | 0.0720 (9) | 0.0480 (7) | 0.0528 (8) | −0.0128 (6) | −0.0063 (7) | −0.0170 (6) |
| C3 | 0.0832 (10) | 0.0545 (8) | 0.0434 (7) | −0.0261 (7) | 0.0163 (7) | −0.0186 (6) |
| C4 | 0.0396 (6) | 0.0556 (7) | 0.0600 (8) | −0.0093 (5) | −0.0002 (5) | −0.0302 (6) |
| C5 | 0.0544 (7) | 0.0413 (6) | 0.0514 (7) | −0.0126 (5) | −0.0025 (5) | −0.0194 (5) |
| C6 | 0.0470 (6) | 0.0380 (5) | 0.0482 (6) | −0.0172 (5) | 0.0019 (5) | −0.0203 (5) |
| C7 | 0.0416 (5) | 0.0336 (5) | 0.0368 (5) | −0.0146 (4) | 0.0032 (4) | −0.0133 (4) |
| C8 | 0.0458 (6) | 0.0454 (6) | 0.0478 (6) | −0.0245 (5) | 0.0110 (5) | −0.0215 (5) |
| C9 | 0.0470 (6) | 0.0436 (6) | 0.0454 (6) | −0.0221 (5) | 0.0132 (5) | −0.0193 (5) |
| C10 | 0.0463 (6) | 0.0359 (5) | 0.0357 (5) | −0.0165 (4) | 0.0053 (4) | −0.0144 (4) |
| C11 | 0.0416 (5) | 0.0356 (5) | 0.0407 (5) | −0.0157 (4) | 0.0012 (4) | −0.0143 (4) |
| C12 | 0.0373 (5) | 0.0344 (5) | 0.0386 (5) | −0.0136 (4) | 0.0043 (4) | −0.0136 (4) |
| C13 | 0.0500 (6) | 0.0406 (6) | 0.0379 (5) | −0.0179 (5) | 0.0047 (4) | −0.0159 (4) |
| C14 | 0.0616 (8) | 0.0506 (7) | 0.0481 (7) | −0.0195 (6) | 0.0019 (6) | −0.0275 (5) |
| C15 | 0.0860 (12) | 0.0714 (10) | 0.0742 (10) | −0.0428 (9) | 0.0087 (9) | −0.0364 (8) |
| O1—N4 | 1.2251 (15) | C5—C6 | 1.5217 (19) |
| O2—N4 | 1.2261 (14) | C5—H5A | 0.9700 |
| O3—C13 | 1.3313 (15) | C5—H5B | 0.9700 |
| O3—C14 | 1.4533 (14) | C6—H6A | 0.9700 |
| O4—C13 | 1.2067 (16) | C6—H6B | 0.9700 |
| N1—C7 | 1.3449 (13) | C7—C8 | 1.4249 (16) |
| N1—C6 | 1.4551 (15) | C7—C12 | 1.4257 (15) |
| N1—H1N1 | 0.856 (19) | C8—C9 | 1.3686 (15) |
| N2—C3 | 1.3395 (16) | C8—H8A | 0.9300 |
| N2—C1 | 1.3518 (19) | C9—C10 | 1.3978 (17) |
| N2—C4 | 1.4657 (15) | C9—H9A | 0.9300 |
| N3—C3 | 1.3120 (19) | C10—C11 | 1.3826 (16) |
| N3—C2 | 1.346 (2) | C10—C13 | 1.4840 (15) |
| N4—C12 | 1.4440 (15) | C11—C12 | 1.3944 (14) |
| C1—C2 | 1.351 (2) | C11—H11A | 0.9300 |
| C1—H1A | 0.9300 | C14—C15 | 1.476 (2) |
| C2—H2A | 0.9300 | C14—H14A | 0.9700 |
| C3—H3A | 0.9300 | C14—H14B | 0.9700 |
| C4—C5 | 1.5186 (19) | C15—H15A | 0.9600 |
| C4—H4A | 0.9700 | C15—H15B | 0.9600 |
| C4—H4B | 0.9700 | C15—H15C | 0.9600 |
| C13—O3—C14 | 115.30 (10) | C5—C6—H6B | 108.9 |
| C7—N1—C6 | 124.49 (10) | H6A—C6—H6B | 107.8 |
| C7—N1—H1N1 | 116.5 (12) | N1—C7—C8 | 119.86 (10) |
| C6—N1—H1N1 | 119.0 (12) | N1—C7—C12 | 125.14 (10) |
| C3—N2—C1 | 105.75 (12) | C8—C7—C12 | 115.00 (9) |
| C3—N2—C4 | 127.17 (12) | C9—C8—C7 | 121.81 (11) |
| C1—N2—C4 | 127.05 (11) | C9—C8—H8A | 119.1 |
| C3—N3—C2 | 104.48 (12) | C7—C8—H8A | 119.1 |
| O1—N4—O2 | 121.58 (11) | C8—C9—C10 | 121.93 (11) |
| O1—N4—C12 | 119.17 (10) | C8—C9—H9A | 119.0 |
| O2—N4—C12 | 119.25 (10) | C10—C9—H9A | 119.0 |
| C2—C1—N2 | 106.62 (13) | C11—C10—C9 | 118.24 (10) |
| C2—C1—H1A | 126.7 | C11—C10—C13 | 123.90 (11) |
| N2—C1—H1A | 126.7 | C9—C10—C13 | 117.86 (10) |
| N3—C2—C1 | 110.43 (13) | C10—C11—C12 | 120.55 (11) |
| N3—C2—H2A | 124.8 | C10—C11—H11A | 119.7 |
| C1—C2—H2A | 124.8 | C12—C11—H11A | 119.7 |
| N3—C3—N2 | 112.72 (13) | C11—C12—C7 | 122.29 (10) |
| N3—C3—H3A | 123.6 | C11—C12—N4 | 116.41 (10) |
| N2—C3—H3A | 123.6 | C7—C12—N4 | 121.29 (9) |
| N2—C4—C5 | 112.73 (10) | O4—C13—O3 | 123.64 (11) |
| N2—C4—H4A | 109.0 | O4—C13—C10 | 123.26 (11) |
| C5—C4—H4A | 109.0 | O3—C13—C10 | 113.10 (10) |
| N2—C4—H4B | 109.0 | O3—C14—C15 | 108.04 (12) |
| C5—C4—H4B | 109.0 | O3—C14—H14A | 110.1 |
| H4A—C4—H4B | 107.8 | C15—C14—H14A | 110.1 |
| C4—C5—C6 | 112.09 (11) | O3—C14—H14B | 110.1 |
| C4—C5—H5A | 109.2 | C15—C14—H14B | 110.1 |
| C6—C5—H5A | 109.2 | H14A—C14—H14B | 108.4 |
| C4—C5—H5B | 109.2 | C14—C15—H15A | 109.5 |
| C6—C5—H5B | 109.2 | C14—C15—H15B | 109.5 |
| H5A—C5—H5B | 107.9 | H15A—C15—H15B | 109.5 |
| N1—C6—C5 | 113.19 (11) | C14—C15—H15C | 109.5 |
| N1—C6—H6A | 108.9 | H15A—C15—H15C | 109.5 |
| C5—C6—H6A | 108.9 | H15B—C15—H15C | 109.5 |
| N1—C6—H6B | 108.9 | ||
| C3—N2—C1—C2 | 0.29 (18) | C9—C10—C11—C12 | −1.70 (18) |
| C4—N2—C1—C2 | 178.23 (13) | C13—C10—C11—C12 | 177.37 (10) |
| C3—N3—C2—C1 | −0.4 (2) | C10—C11—C12—C7 | −2.12 (18) |
| N2—C1—C2—N3 | 0.0 (2) | C10—C11—C12—N4 | 176.86 (11) |
| C2—N3—C3—N2 | 0.6 (2) | N1—C7—C12—C11 | −175.11 (11) |
| C1—N2—C3—N3 | −0.5 (2) | C8—C7—C12—C11 | 4.66 (17) |
| C4—N2—C3—N3 | −178.48 (13) | N1—C7—C12—N4 | 5.96 (19) |
| C3—N2—C4—C5 | −70.00 (19) | C8—C7—C12—N4 | −174.27 (11) |
| C1—N2—C4—C5 | 112.49 (16) | O1—N4—C12—C11 | 4.07 (19) |
| N2—C4—C5—C6 | −62.97 (15) | O2—N4—C12—C11 | −175.55 (12) |
| C7—N1—C6—C5 | 85.02 (15) | O1—N4—C12—C7 | −176.93 (13) |
| C4—C5—C6—N1 | 179.45 (10) | O2—N4—C12—C7 | 3.44 (19) |
| C6—N1—C7—C8 | −3.56 (19) | C14—O3—C13—O4 | −1.8 (2) |
| C6—N1—C7—C12 | 176.19 (11) | C14—O3—C13—C10 | 178.66 (10) |
| N1—C7—C8—C9 | 176.17 (12) | C11—C10—C13—O4 | −175.61 (13) |
| C12—C7—C8—C9 | −3.61 (18) | C9—C10—C13—O4 | 3.5 (2) |
| C7—C8—C9—C10 | 0.0 (2) | C11—C10—C13—O3 | 3.97 (18) |
| C8—C9—C10—C11 | 2.76 (19) | C9—C10—C13—O3 | −176.96 (11) |
| C8—C9—C10—C13 | −176.37 (12) | C13—O3—C14—C15 | −163.51 (13) |
| H··· | ||||
| N1—H1N1···O2 | 0.859 (18) | 2.004 (18) | 2.6464 (18) | 130.9 (15) |
| N1—H1N1···N3i | 0.859 (18) | 2.345 (17) | 3.0281 (18) | 136.7 (15) |
| C15—H15A···O1ii | 0.96 | 2.47 | 3.346 (2) | 151 |
| C1—H1A···Cg1iii | 0.93 | 2.90 | 3.5962 (16) | 132 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C7–C12 benzene ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.859 (18) | 2.004 (18) | 2.6464 (18) | 130.9 (15) |
| N1—H1 | 0.859 (18) | 2.345 (17) | 3.0281 (18) | 136.7 (15) |
| C15—H15 | 0.96 | 2.47 | 3.346 (2) | 151 |
| C1—H1 | 0.93 | 2.90 | 3.5962 (16) | 132 |
Symmetry codes: (i) ; (ii) ; (iii) .