Literature DB >> 22058746

2-[(1H-Imidazol-2-yl)disulfan-yl]-1H-imidazole.

Mona Feizbakhsh Bazargani1, Laleh Talavat, Soheila Naderi, Hamid Reza Khavasi.   

Abstract

In the title molecule, C(6)H(6)N(4)S(2), a twofold rotation axis passes through the mid-point of the S-S bond. The C-S-S-C torsion angle is 83.62 (17)°. π-π stacking between imidazole rings of adjacent mol-ecules is observed in the crystal structure, the centroid-centroid distance being 3.447 (2) Å. Inter-molecular N-H⋯S hydrogen bonding results in the formation of a linear chain in the c-axis direction.

Entities:  

Year:  2011        PMID: 22058746      PMCID: PMC3201382          DOI: 10.1107/S1600536811036014

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related imidazole disulfide compounds, see: Robina et al. (1990 ▶); Figueroa et al. (2007 ▶); Chernovyants et al. (2008 ▶).

Experimental

Crystal data

C6H6N4S2 M = 198.29 Monoclinic, a = 14.083 (3) Å b = 6.3928 (13) Å c = 9.922 (2) Å β = 122.29 (3)° V = 755.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.64 mm−1 T = 298 K 0.45 × 0.25 × 0.15 mm

Data collection

STOE IPDS II diffractometer Absorption correction: multi-scan (X-RED and X-SHAPE; Stoe & Cie, 2005 ▶) T min = 0.823, T max = 0.906 4116 measured reflections 1007 independent reflections 948 reflections with I > 2σ(I) R int = 0.112

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.185 S = 1.18 1007 reflections 56 parameters H-atom parameters constrained Δρmax = 0.82 e Å−3 Δρmin = −0.56 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036014/xu5318sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036014/xu5318Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036014/xu5318Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N4S2F(000) = 408
Mr = 198.29Dx = 1.744 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1007 reflections
a = 14.083 (3) Åθ = 3.4–23°
b = 6.3928 (13) ŵ = 0.64 mm1
c = 9.922 (2) ÅT = 298 K
β = 122.29 (3)°Prism, colorless
V = 755.1 (4) Å30.45 × 0.25 × 0.15 mm
Z = 4
STOE IPDS II diffractometer1007 independent reflections
graphite948 reflections with I > 2σ(I)
Detector resolution: 0.15 pixels mm-1Rint = 0.112
rotation method scansθmax = 29.2°, θmin = 3.4°
Absorption correction: multi-scan (X-RED and X-SHAPE; Stoe & Cie, 2005)h = −19→19
Tmin = 0.823, Tmax = 0.906k = −8→6
4116 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.185w = 1/[σ2(Fo2) + (0.1134P)2 + 0.6898P] where P = (Fo2 + 2Fc2)/3
S = 1.18(Δ/σ)max < 0.001
1007 reflectionsΔρmax = 0.82 e Å3
56 parametersΔρmin = −0.56 e Å3
0 restraintsExtinction correction: SHELXL
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.11 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.08686 (5)0.07449 (9)0.32168 (6)0.0337 (4)
N10.13136 (17)0.4761 (4)0.4347 (2)0.0319 (5)
N20.11134 (18)0.2432 (4)0.5892 (2)0.0350 (6)
H2A0.10060.1290.6250.042*
C10.11109 (17)0.2743 (4)0.4570 (2)0.0281 (5)
C20.1440 (2)0.5734 (4)0.5611 (3)0.0335 (6)
H20.15850.71550.58210.04*
C30.13289 (18)0.4382 (4)0.6536 (2)0.0280 (5)
H30.1390.47230.74910.034*
U11U22U33U12U13U23
S10.0385 (5)0.0326 (5)0.0294 (5)0.00531 (19)0.0178 (4)−0.00166 (17)
N10.0407 (10)0.0348 (11)0.0256 (9)−0.0026 (8)0.0213 (7)−0.0020 (7)
N20.0451 (11)0.0375 (11)0.0271 (10)0.0024 (8)0.0226 (8)0.0042 (7)
C10.0300 (10)0.0334 (11)0.0222 (10)0.0028 (8)0.0147 (8)0.0011 (7)
C20.0382 (12)0.0369 (14)0.0260 (11)−0.0032 (8)0.0175 (9)−0.0040 (7)
C30.0316 (10)0.0373 (13)0.0180 (9)0.0023 (7)0.0151 (8)−0.0010 (7)
S1—C11.750 (2)N2—C31.359 (3)
S1—S1i2.0713 (14)N2—H2A0.86
N1—C21.324 (3)C2—C31.329 (3)
N1—C11.364 (3)C2—H20.93
N2—C11.324 (3)C3—H30.93
C1—S1—S1i101.62 (7)N1—C1—S1122.51 (16)
C2—N1—C1102.96 (19)N1—C2—C3110.0 (2)
C1—N2—C3102.12 (19)N1—C2—H2125
C1—N2—H2A128.9C3—C2—H2125
C3—N2—H2A128.9C2—C3—N2110.52 (19)
N2—C1—N1114.4 (2)C2—C3—H3124.7
N2—C1—S1123.13 (18)N2—C3—H3124.7
C3—N2—C1—N10.1 (3)S1i—S1—C1—N1−93.68 (18)
C3—N2—C1—S1−179.85 (15)C1—N1—C2—C30.5 (3)
C2—N1—C1—N2−0.4 (3)N1—C2—C3—N2−0.4 (3)
C2—N1—C1—S1179.60 (17)C1—N2—C3—C20.2 (3)
S1i—S1—C1—N286.31 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2A···S1ii0.862.443.227 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯S1i0.862.443.227 (3)153

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Applications of bis(1-R-imidazol-2-yl)disulfides and diselenides as ligands for main-group and transition metals: kappa2-(N,N) coordination, S-S bond cleavage, and S-S/E-E (E = S, Se) bond metathesis reactions.

Authors:  Joshua S Figueroa; Kevin Yurkerwich; Jonathan Melnick; Daniela Buccella; Gerard Parkin
Journal:  Inorg Chem       Date:  2007-09-28       Impact factor: 5.165

  2 in total

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