Literature DB >> 22058742

(3Z)-3-Hydrazinylideneindolin-2-one.

Rifat Ara Jamal, Uzma Ashiq, Sammer Yousuf.   

Abstract

The title mol-ecule, C(8)H(7)N(3)O, is almost planar, with a maximum deviation of 0.0232 (2) Å from the least-squares plane. The Z conformation of the C=N double bond is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal, adjacent mol-ecules are linked by inter-molecular N-H⋯N and N-H⋯O hydrogen bonds, forming zigzag sheets parallel to the c axis; the sheets are further stabilized by π-π inter-actions [centroid-centroid distance = 3.7390 (10) Å].

Entities:  

Year:  2011        PMID: 22058742      PMCID: PMC3201467          DOI: 10.1107/S1600536811035367

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related compounds, see: Sarangapani et al. (1994 ▶). For related structures, see: Ali et al. (2005a ▶,b ▶); Pelosi et al. (2005 ▶).

Experimental

Crystal data

C8H7N3O M = 161.17 Orthorhombic, a = 4.7211 (5) Å b = 11.4263 (13) Å c = 13.3693 (15) Å V = 721.20 (14) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 273 K 0.50 × 0.10 × 0.09 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.950, T max = 0.991 4234 measured reflections 811 independent reflections 776 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.079 S = 1.08 811 reflections 121 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811035367/ng5222sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035367/ng5222Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811035367/ng5222Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7N3ODx = 1.484 Mg m3
Mr = 161.17Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 2104 reflections
a = 4.7211 (5) Åθ = 3.1–27.5°
b = 11.4263 (13) ŵ = 0.10 mm1
c = 13.3693 (15) ÅT = 273 K
V = 721.20 (14) Å3Plate, colorles
Z = 40.50 × 0.10 × 0.09 mm
F(000) = 336
Bruker SMART APEX CCD area-detector diffractometer811 independent reflections
Radiation source: fine-focus sealed tube776 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 25.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −5→5
Tmin = 0.950, Tmax = 0.991k = −13→13
4234 measured reflectionsl = −16→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0512P)2 + 0.0832P] where P = (Fo2 + 2Fc2)/3
811 reflections(Δ/σ)max < 0.001
121 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1159 (3)0.11147 (11)0.46693 (10)0.0443 (4)
N20.2067 (3)−0.13322 (13)0.54465 (10)0.0345 (4)
N30.0172 (4)−0.12868 (16)0.47156 (13)0.0429 (4)
C80.5392 (4)−0.02667 (15)0.65275 (13)0.0331 (4)
C60.2809 (4)0.08289 (15)0.53444 (14)0.0343 (4)
C70.3271 (4)−0.03705 (14)0.57432 (13)0.0317 (4)
N10.4577 (4)0.15444 (13)0.58597 (13)0.0405 (4)
C10.6635 (5)−0.10479 (17)0.71866 (14)0.0408 (5)
H1A0.6159−0.18370.71670.049*
C40.8090 (5)0.13277 (19)0.72546 (15)0.0460 (5)
H4A0.85700.21170.72770.055*
C20.8591 (5)−0.06419 (19)0.78751 (15)0.0469 (5)
H2B0.9425−0.11600.83230.056*
C50.6139 (4)0.09186 (16)0.65757 (14)0.0357 (5)
C30.9315 (5)0.0535 (2)0.79003 (16)0.0491 (6)
H3A1.06510.07940.83610.059*
H2N3−0.028 (5)−0.060 (2)0.4466 (16)0.048 (6)*
H1N3−0.064 (6)−0.199 (2)0.4587 (17)0.066 (8)*
H1N10.481 (6)0.231 (2)0.5712 (16)0.060 (7)*
U11U22U33U12U13U23
O10.0552 (9)0.0305 (7)0.0471 (7)0.0065 (6)−0.0067 (7)0.0062 (6)
N20.0372 (8)0.0285 (8)0.0379 (8)−0.0002 (7)0.0034 (7)0.0003 (6)
N30.0488 (10)0.0313 (9)0.0485 (9)−0.0036 (8)−0.0060 (9)0.0006 (8)
C80.0338 (10)0.0300 (9)0.0356 (9)0.0003 (9)0.0061 (8)0.0005 (7)
C60.0382 (10)0.0273 (9)0.0374 (9)0.0020 (8)0.0044 (9)0.0014 (7)
C70.0342 (9)0.0237 (8)0.0371 (8)0.0007 (8)0.0047 (8)0.0004 (7)
N10.0488 (10)0.0234 (8)0.0494 (9)−0.0043 (7)0.0025 (9)0.0039 (7)
C10.0448 (11)0.0346 (10)0.0430 (10)0.0047 (10)0.0000 (10)0.0022 (8)
C40.0437 (12)0.0425 (11)0.0517 (11)−0.0096 (11)0.0048 (10)−0.0088 (9)
C20.0454 (12)0.0545 (12)0.0407 (10)0.0126 (11)−0.0036 (10)−0.0016 (9)
C50.0365 (11)0.0313 (9)0.0393 (9)−0.0031 (8)0.0062 (8)−0.0005 (7)
C30.0402 (12)0.0627 (14)0.0443 (10)0.0001 (11)−0.0030 (10)−0.0113 (10)
O1—C61.236 (2)N1—C51.404 (3)
N2—C71.299 (2)N1—H1N10.90 (2)
N2—N31.326 (2)C1—C21.384 (3)
N3—H2N30.88 (2)C1—H1A0.9300
N3—H1N30.91 (3)C4—C51.375 (3)
C8—C11.385 (3)C4—C31.378 (3)
C8—C51.401 (3)C4—H4A0.9300
C8—C71.455 (3)C2—C31.388 (3)
C6—N11.356 (3)C2—H2B0.9300
C6—C71.487 (2)C3—H3A0.9300
C7—N2—N3119.15 (15)C2—C1—C8119.33 (19)
N2—N3—H2N3118.5 (15)C2—C1—H1A120.3
N2—N3—H1N3112.9 (15)C8—C1—H1A120.3
H2N3—N3—H1N3128 (2)C5—C4—C3118.1 (2)
C1—C8—C5119.17 (19)C5—C4—H4A120.9
C1—C8—C7134.24 (18)C3—C4—H4A120.9
C5—C8—C7106.57 (15)C1—C2—C3120.3 (2)
O1—C6—N1126.82 (17)C1—C2—H2B119.8
O1—C6—C7126.73 (17)C3—C2—H2B119.8
N1—C6—C7106.45 (16)C4—C5—C8121.84 (18)
N2—C7—C8126.17 (16)C4—C5—N1128.95 (18)
N2—C7—C6127.29 (17)C8—C5—N1109.21 (17)
C8—C7—C6106.52 (15)C4—C3—C2121.2 (2)
C6—N1—C5111.25 (15)C4—C3—H3A119.4
C6—N1—H1N1123.2 (16)C2—C3—H3A119.4
C5—N1—H1N1125.3 (17)
N3—N2—C7—C8−179.67 (18)C7—C8—C1—C2−178.4 (2)
N3—N2—C7—C6−0.8 (3)C8—C1—C2—C3−0.4 (3)
C1—C8—C7—N2−3.2 (4)C3—C4—C5—C8−0.2 (3)
C5—C8—C7—N2178.52 (18)C3—C4—C5—N1178.8 (2)
C1—C8—C7—C6177.8 (2)C1—C8—C5—C40.6 (3)
C5—C8—C7—C6−0.5 (2)C7—C8—C5—C4179.15 (17)
O1—C6—C7—N21.1 (3)C1—C8—C5—N1−178.57 (17)
N1—C6—C7—N2−178.18 (18)C7—C8—C5—N10.0 (2)
O1—C6—C7—C8−179.83 (17)C6—N1—C5—C4−178.5 (2)
N1—C6—C7—C80.8 (2)C6—N1—C5—C80.6 (2)
O1—C6—N1—C5179.82 (17)C5—C4—C3—C2−0.5 (3)
C7—C6—N1—C5−0.9 (2)C1—C2—C3—C40.8 (3)
C5—C8—C1—C2−0.2 (3)
D—H···AD—HH···AD···AD—H···A
N3—H2N3···O10.88 (2)2.09 (2)2.784 (2)135 (2)
N3—H1N3···N2i0.91 (2)2.20 (3)3.098 (2)169 (2)
N1—H1N1···O1ii0.90 (2)1.98 (2)2.866 (2)168 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H2N3⋯O10.88 (2)2.09 (2)2.784 (2)135 (2)
N3—H1N3⋯N2i0.91 (2)2.20 (3)3.098 (2)169 (2)
N1—H1N1⋯O1ii0.90 (2)1.98 (2)2.866 (2)168 (3)

Symmetry codes: (i) ; (ii) .

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