| Literature DB >> 22058737 |
Hoong-Kun Fun, Madhukar Hemamalini, Shobhitha Shetty, Balakrishna Kalluraya.
Abstract
In the title compound, C(13)H(16)N(2)O(4), an intra-molecular N-H⋯O hydrogen bond generates an S(6) ring. The mol-ecule adopts an E configuration with respect to the central C=N double bond. In the crystal, symmetry-related mol-ecules are connected into chains along [010] via weak C-H⋯N hydrogen bonds. The crystal structure is further stabilized by weak C-H⋯π inter-actions.Entities:
Year: 2011 PMID: 22058737 PMCID: PMC3201242 DOI: 10.1107/S1600536811034854
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16N2O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 7354 reflections |
| θ = 2.5–30.8° | |
| µ = 0.10 mm−1 | |
| β = 120.003 (3)° | Needle, green |
| 0.75 × 0.27 × 0.20 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3909 independent reflections |
| Radiation source: fine-focus sealed tube | 3123 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 14963 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3909 reflections | (Δ/σ)max < 0.001 |
| 179 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.30643 (9) | 0.58032 (7) | 0.53563 (7) | 0.02056 (18) | |
| O2 | 0.61515 (9) | 0.07478 (7) | 0.68475 (7) | 0.01987 (18) | |
| O3 | 0.76423 (9) | 0.37484 (7) | 0.73708 (7) | 0.02157 (19) | |
| O4 | 0.51710 (10) | 0.68753 (7) | 0.63602 (7) | 0.02266 (19) | |
| N1 | 0.49890 (11) | 0.28280 (8) | 0.62667 (8) | 0.01539 (19) | |
| N2 | 0.44571 (10) | 0.38868 (8) | 0.60104 (8) | 0.01477 (19) | |
| C1 | 0.24246 (12) | 0.20271 (10) | 0.51384 (9) | 0.0164 (2) | |
| H1A | 0.2010 | 0.2769 | 0.4937 | 0.020* | |
| C2 | 0.14890 (13) | 0.10570 (10) | 0.47404 (10) | 0.0188 (2) | |
| H2A | 0.0447 | 0.1147 | 0.4267 | 0.023* | |
| C3 | 0.21166 (13) | −0.00471 (10) | 0.50522 (10) | 0.0193 (2) | |
| H3A | 0.1486 | −0.0695 | 0.4788 | 0.023* | |
| C4 | 0.36743 (13) | −0.02020 (10) | 0.57532 (10) | 0.0182 (2) | |
| H4A | 0.4082 | −0.0946 | 0.5955 | 0.022* | |
| C5 | 0.46119 (12) | 0.07678 (9) | 0.61481 (9) | 0.0155 (2) | |
| C6 | 0.39815 (12) | 0.18864 (9) | 0.58381 (9) | 0.0149 (2) | |
| C7 | 0.53715 (12) | 0.47955 (9) | 0.63721 (9) | 0.0154 (2) | |
| C8 | 0.45682 (13) | 0.59306 (9) | 0.60453 (9) | 0.0160 (2) | |
| C9 | 0.21993 (13) | 0.68756 (10) | 0.50635 (10) | 0.0211 (2) | |
| H9A | 0.2528 | 0.7404 | 0.4663 | 0.025* | |
| H9B | 0.2336 | 0.7254 | 0.5764 | 0.025* | |
| C10 | 0.05623 (14) | 0.65495 (11) | 0.42841 (12) | 0.0297 (3) | |
| H10A | −0.0054 | 0.7237 | 0.4075 | 0.045* | |
| H10B | 0.0255 | 0.6022 | 0.4689 | 0.045* | |
| H10C | 0.0442 | 0.6182 | 0.3592 | 0.045* | |
| C11 | 0.70375 (12) | 0.47143 (10) | 0.70367 (9) | 0.0172 (2) | |
| C12 | 0.80061 (13) | 0.57743 (11) | 0.72907 (11) | 0.0232 (2) | |
| H12A | 0.9049 | 0.5546 | 0.7633 | 0.035* | |
| H12B | 0.7885 | 0.6267 | 0.7823 | 0.035* | |
| H12C | 0.7706 | 0.6189 | 0.6579 | 0.035* | |
| C13 | 0.68844 (14) | −0.03669 (10) | 0.71190 (10) | 0.0215 (2) | |
| H13A | 0.7964 | −0.0261 | 0.7543 | 0.032* | |
| H13B | 0.6599 | −0.0782 | 0.6410 | 0.032* | |
| H13C | 0.6581 | −0.0803 | 0.7586 | 0.032* | |
| H1N1 | 0.5992 (19) | 0.2707 (14) | 0.6701 (14) | 0.037 (4)* |
| O1 | 0.0175 (4) | 0.0120 (4) | 0.0265 (4) | 0.0022 (3) | 0.0067 (3) | −0.0010 (3) |
| O2 | 0.0152 (4) | 0.0145 (4) | 0.0242 (4) | 0.0039 (3) | 0.0056 (3) | 0.0015 (3) |
| O3 | 0.0179 (4) | 0.0180 (4) | 0.0241 (4) | 0.0013 (3) | 0.0069 (3) | 0.0013 (3) |
| O4 | 0.0229 (4) | 0.0128 (4) | 0.0280 (4) | −0.0026 (3) | 0.0095 (4) | −0.0013 (3) |
| N1 | 0.0153 (4) | 0.0113 (4) | 0.0177 (4) | 0.0009 (4) | 0.0068 (4) | 0.0009 (3) |
| N2 | 0.0182 (4) | 0.0114 (4) | 0.0149 (4) | 0.0006 (3) | 0.0084 (4) | 0.0001 (3) |
| C1 | 0.0168 (5) | 0.0132 (5) | 0.0191 (5) | 0.0030 (4) | 0.0088 (4) | 0.0021 (4) |
| C2 | 0.0160 (5) | 0.0173 (5) | 0.0224 (5) | −0.0001 (4) | 0.0092 (4) | −0.0001 (4) |
| C3 | 0.0202 (5) | 0.0144 (5) | 0.0233 (5) | −0.0034 (4) | 0.0108 (5) | −0.0019 (4) |
| C4 | 0.0224 (6) | 0.0116 (5) | 0.0208 (5) | 0.0010 (4) | 0.0111 (4) | 0.0006 (4) |
| C5 | 0.0163 (5) | 0.0139 (5) | 0.0158 (5) | 0.0021 (4) | 0.0077 (4) | 0.0006 (4) |
| C6 | 0.0173 (5) | 0.0122 (5) | 0.0163 (5) | −0.0005 (4) | 0.0092 (4) | −0.0002 (4) |
| C7 | 0.0168 (5) | 0.0133 (5) | 0.0150 (5) | −0.0002 (4) | 0.0071 (4) | 0.0002 (4) |
| C8 | 0.0182 (5) | 0.0140 (5) | 0.0158 (5) | −0.0001 (4) | 0.0085 (4) | 0.0001 (4) |
| C9 | 0.0210 (6) | 0.0122 (5) | 0.0272 (6) | 0.0038 (4) | 0.0100 (5) | −0.0004 (4) |
| C10 | 0.0205 (6) | 0.0212 (6) | 0.0420 (7) | 0.0040 (5) | 0.0116 (6) | 0.0000 (5) |
| C11 | 0.0170 (5) | 0.0177 (5) | 0.0152 (5) | −0.0010 (4) | 0.0067 (4) | −0.0007 (4) |
| C12 | 0.0184 (5) | 0.0204 (6) | 0.0264 (6) | −0.0038 (5) | 0.0078 (5) | 0.0001 (5) |
| C13 | 0.0215 (6) | 0.0192 (6) | 0.0243 (6) | 0.0081 (5) | 0.0119 (5) | 0.0052 (4) |
| O1—C8 | 1.3430 (14) | C4—H4A | 0.9300 |
| O1—C9 | 1.4510 (13) | C5—C6 | 1.4041 (15) |
| O2—C5 | 1.3660 (13) | C7—C11 | 1.4732 (16) |
| O2—C13 | 1.4355 (13) | C7—C8 | 1.4852 (15) |
| O3—C11 | 1.2393 (13) | C9—C10 | 1.5053 (17) |
| O4—C8 | 1.2143 (13) | C9—H9A | 0.9700 |
| N1—N2 | 1.3064 (12) | C9—H9B | 0.9700 |
| N1—C6 | 1.4019 (14) | C10—H10A | 0.9600 |
| N1—H1N1 | 0.898 (17) | C10—H10B | 0.9600 |
| N2—C7 | 1.3201 (14) | C10—H10C | 0.9600 |
| C1—C2 | 1.3885 (15) | C11—C12 | 1.4967 (16) |
| C1—C6 | 1.3896 (15) | C12—H12A | 0.9600 |
| C1—H1A | 0.9300 | C12—H12B | 0.9600 |
| C2—C3 | 1.3880 (16) | C12—H12C | 0.9600 |
| C2—H2A | 0.9300 | C13—H13A | 0.9600 |
| C3—C4 | 1.3925 (16) | C13—H13B | 0.9600 |
| C3—H3A | 0.9300 | C13—H13C | 0.9600 |
| C4—C5 | 1.3891 (15) | ||
| C8—O1—C9 | 115.03 (9) | O1—C8—C7 | 112.17 (9) |
| C5—O2—C13 | 117.52 (9) | O1—C9—C10 | 106.76 (9) |
| N2—N1—C6 | 119.32 (9) | O1—C9—H9A | 110.4 |
| N2—N1—H1N1 | 120.1 (11) | C10—C9—H9A | 110.4 |
| C6—N1—H1N1 | 120.6 (11) | O1—C9—H9B | 110.4 |
| N1—N2—C7 | 121.15 (9) | C10—C9—H9B | 110.4 |
| C2—C1—C6 | 119.85 (10) | H9A—C9—H9B | 108.6 |
| C2—C1—H1A | 120.1 | C9—C10—H10A | 109.5 |
| C6—C1—H1A | 120.1 | C9—C10—H10B | 109.5 |
| C3—C2—C1 | 119.66 (10) | H10A—C10—H10B | 109.5 |
| C3—C2—H2A | 120.2 | C9—C10—H10C | 109.5 |
| C1—C2—H2A | 120.2 | H10A—C10—H10C | 109.5 |
| C2—C3—C4 | 121.15 (10) | H10B—C10—H10C | 109.5 |
| C2—C3—H3A | 119.4 | O3—C11—C7 | 119.26 (10) |
| C4—C3—H3A | 119.4 | O3—C11—C12 | 119.68 (10) |
| C5—C4—C3 | 119.23 (10) | C7—C11—C12 | 121.05 (10) |
| C5—C4—H4A | 120.4 | C11—C12—H12A | 109.5 |
| C3—C4—H4A | 120.4 | C11—C12—H12B | 109.5 |
| O2—C5—C4 | 125.60 (10) | H12A—C12—H12B | 109.5 |
| O2—C5—C6 | 114.58 (9) | C11—C12—H12C | 109.5 |
| C4—C5—C6 | 119.81 (10) | H12A—C12—H12C | 109.5 |
| C1—C6—N1 | 122.73 (10) | H12B—C12—H12C | 109.5 |
| C1—C6—C5 | 120.29 (10) | O2—C13—H13A | 109.5 |
| N1—C6—C5 | 116.98 (9) | O2—C13—H13B | 109.5 |
| N2—C7—C11 | 124.05 (10) | H13A—C13—H13B | 109.5 |
| N2—C7—C8 | 113.80 (9) | O2—C13—H13C | 109.5 |
| C11—C7—C8 | 122.15 (10) | H13A—C13—H13C | 109.5 |
| O4—C8—O1 | 122.70 (10) | H13B—C13—H13C | 109.5 |
| O4—C8—C7 | 125.13 (10) | ||
| C6—N1—N2—C7 | −178.24 (9) | C4—C5—C6—N1 | 179.90 (10) |
| C6—C1—C2—C3 | 0.46 (16) | N1—N2—C7—C11 | 2.76 (16) |
| C1—C2—C3—C4 | −0.43 (17) | N1—N2—C7—C8 | −177.39 (9) |
| C2—C3—C4—C5 | 0.18 (17) | C9—O1—C8—O4 | −3.10 (15) |
| C13—O2—C5—C4 | 5.71 (15) | C9—O1—C8—C7 | 176.32 (9) |
| C13—O2—C5—C6 | −174.96 (9) | N2—C7—C8—O4 | 174.02 (10) |
| C3—C4—C5—O2 | 179.33 (10) | C11—C7—C8—O4 | −6.12 (17) |
| C3—C4—C5—C6 | 0.03 (16) | N2—C7—C8—O1 | −5.37 (13) |
| C2—C1—C6—N1 | 179.86 (10) | C11—C7—C8—O1 | 174.48 (9) |
| C2—C1—C6—C5 | −0.26 (15) | C8—O1—C9—C10 | 179.35 (10) |
| N2—N1—C6—C1 | 0.42 (15) | N2—C7—C11—O3 | −6.31 (16) |
| N2—N1—C6—C5 | −179.46 (9) | C8—C7—C11—O3 | 173.85 (10) |
| O2—C5—C6—C1 | −179.36 (9) | N2—C7—C11—C12 | 172.36 (10) |
| C4—C5—C6—C1 | 0.01 (15) | C8—C7—C11—C12 | −7.48 (15) |
| O2—C5—C6—N1 | 0.53 (13) |
| Cg1 is the centroid of the C1–C6 ring. |
| H··· | ||||
| N1—H1N1···O3 | 0.90 (2) | 1.886 (19) | 2.5715 (15) | 131.6 (14) |
| C13—H13C···N2i | 0.96 | 2.58 | 3.4835 (18) | 156 |
| C12—H12B···Cg1ii | 0.96 | 2.92 | 3.6620 (15) | 135 |
| C13—H13B···Cg1iii | 0.96 | 2.66 | 3.4887 (14) | 145 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.90 (2) | 1.886 (19) | 2.5715 (15) | 131.6 (14) |
| C13—H13 | 0.96 | 2.58 | 3.4835 (18) | 156 |
| C12—H12 | 0.96 | 2.92 | 3.6620 (15) | 135 |
| C13—H13 | 0.96 | 2.66 | 3.4887 (14) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) .