Literature DB >> 22058724

Poly[[[μ(2)-1,1'-(butane-1,4-di-yl)bis-(1H-imidazole)-κN:N](μ(2)-2,6-di-methyl-pyridine-3,5-dicarboxyl-ato-κO:O)zinc] dihydrate].

Yu-Mei Yue, Lei Qian, Zheng-Hao Zhu, Cheng Wang, Ting Gao.   

Abstract

In the title coordination polymer, {[Zn(C(9)H(7)NO(4))(C(10)H(14)N(4))]·2H(2)O}(n), the Zn(II) ion displays a distorted tetra-hedral geometry with two imidazole N atoms from two 1,1'-(butane-1,4-di-yl)bis-(imidazole) (bbi) ligands and two carboxyl-ate O atoms from two 2,6-dimethyl-pyridine-3,5-dicarboxyl-ate (dpdc) ligands. The bbi and dpdc ligands bridge the Zn(II) ions, forming layers parallel to (011). O-H⋯O and O-H⋯N hydrogen bonds and π-π inter-actions between the imidazole rings [centroid-centroid distance = 3.807 (5) Å] connect the layers. Two of the three uncoordinated water mol-ecules are disordered, each over two 0.25-occupancy positions.

Entities:  

Year:  2011        PMID: 22058724      PMCID: PMC3201321          DOI: 10.1107/S1600536811039481

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For transition metal complexes derived from 2,6-dimethyl­pyridine-3,5-dicarb­oxy­lic acid, see: Chen et al. (2009 ▶); Huang et al. (2008 ▶); Zhang et al. (2008a ▶); Zhou et al. (2009 ▶). For metal complexes derived from 1,1′-(butane-1,4-di­yl)bis­(imidazole) and carb­oxy­lic acids, see: Lan et al. (2008 ▶); Tian et al. (2009 ▶); Zhang et al. (2008b ▶).

Experimental

Crystal data

[Zn(C9H7NO4)(C10H14N4)]·2H2O M = 484.82 Orthorhombic, a = 17.8088 (12) Å b = 9.4003 (4) Å c = 15.5798 (8) Å V = 2608.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.98 mm−1 T = 293 K 0.22 × 0.21 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.807, T max = 0.823 14228 measured reflections 4717 independent reflections 3753 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.175 S = 1.03 4717 reflections 315 parameters 36 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.64 e Å−3 Absolute structure: Flack (1983 ▶), 2186 Friedel pairs Flack parameter: 0.03 (2) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039481/hy2452sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039481/hy2452Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C9H7NO4)(C10H14N4)]·2H2ODx = 1.234 Mg m3
Mr = 484.82Melting point: not measured K
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 4717 reflections
a = 17.8088 (12) Åθ = 2.3–25.5°
b = 9.4003 (4) ŵ = 0.98 mm1
c = 15.5798 (8) ÅT = 293 K
V = 2608.2 (2) Å3Block, colorless
Z = 40.22 × 0.21 × 0.20 mm
F(000) = 1008
Bruker SMART APEX CCD diffractometer4717 independent reflections
Radiation source: fine-focus sealed tube3753 reflections with I > 2σ(I)
graphiteRint = 0.087
φ and ω scansθmax = 25.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→21
Tmin = 0.807, Tmax = 0.823k = −11→11
14228 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.175w = 1/[σ2(Fo2) + (0.1192P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.042
4717 reflectionsΔρmax = 0.67 e Å3
315 parametersΔρmin = −0.64 e Å3
36 restraintsAbsolute structure: Flack (1983), 2186 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (2)
xyzUiso*/UeqOcc. (<1)
Zn10.73885 (3)0.97189 (5)0.87767 (6)0.0381 (2)
O10.6630 (2)0.8258 (4)0.8567 (3)0.0560 (12)
O20.7521 (2)0.6656 (5)0.8691 (6)0.0684 (15)
O30.5991 (3)0.1007 (5)0.9535 (4)0.0695 (14)
O40.6934 (2)0.1619 (3)0.8694 (3)0.0467 (9)
C30.6499 (2)0.4454 (4)0.8818 (5)0.0351 (10)
H30.70120.42690.88170.080*
N20.8088 (3)0.9860 (6)0.7781 (4)0.0429 (13)
N30.8753 (3)0.9276 (6)0.6618 (4)0.0522 (13)
N41.2098 (4)1.0326 (6)0.4941 (4)0.0477 (15)
N51.1556 (4)0.9499 (7)0.6067 (3)0.0527 (16)
C20.6262 (3)0.5836 (5)0.8704 (4)0.0362 (10)
C10.5488 (2)0.6115 (5)0.8722 (4)0.0362 (10)
N10.5019 (2)0.4987 (4)0.8838 (6)0.0395 (10)
C50.5237 (3)0.3608 (6)0.8968 (3)0.0381 (13)
C40.5999 (3)0.3304 (5)0.8935 (3)0.0363 (13)
C60.6854 (3)0.6980 (5)0.8651 (4)0.0383 (12)
C70.6308 (3)0.1830 (5)0.9067 (3)0.0372 (12)
C80.5117 (3)0.7510 (6)0.8585 (5)0.0523 (16)
H8A0.51600.77770.79920.080*
H8B0.53540.82180.89370.080*
H8C0.45960.74390.87380.080*
C90.4619 (4)0.2569 (7)0.9113 (5)0.0599 (18)
H9A0.44560.26230.97000.080*
H9B0.47960.16250.89930.080*
H9C0.42060.27890.87400.080*
C100.8374 (4)0.8823 (7)0.7308 (4)0.0470 (15)
H100.83180.78650.74440.080*
C110.8304 (5)1.1069 (9)0.7376 (5)0.065 (2)
H110.81871.19800.75670.080*
C120.8718 (5)1.0785 (10)0.6648 (6)0.073 (2)
H120.89271.14320.62640.080*
C130.9116 (4)0.8468 (8)0.5972 (4)0.0553 (16)
H13A0.88880.86850.54220.080*
H13B0.90350.74650.60860.080*
C140.9961 (4)0.8745 (8)0.5913 (4)0.0560 (16)
H14A1.01830.80450.55320.080*
H14B1.00410.96750.56590.080*
C151.0364 (4)0.8687 (9)0.6769 (4)0.0663 (19)
H15A1.01570.79170.71090.080*
H15B1.02770.95690.70760.080*
C161.1211 (4)0.8462 (11)0.6664 (5)0.080 (3)
H16A1.14510.85450.72210.080*
H16B1.13010.75070.64520.080*
C171.1862 (5)0.9177 (9)0.5306 (5)0.060 (2)
H171.19000.82660.50770.080*
C181.1924 (4)1.1407 (8)0.5463 (4)0.0531 (16)
H181.20171.23650.53580.080*
C191.1601 (4)1.0882 (12)0.6143 (5)0.069 (2)
H191.14291.14080.66090.080*
O1W0.3529 (5)0.5563 (7)0.9086 (4)0.0930 (19)
O3W0.7170 (19)0.455 (3)1.0985 (19)0.094 (7)0.25
O3W'0.670 (3)0.304 (5)1.064 (3)0.166 (14)0.25
O2W'0.9930 (11)0.4765 (19)1.0714 (12)0.053 (4)0.25
O2W0.9724 (18)0.538 (3)1.1357 (19)0.091 (7)0.25
H1B0.320 (2)0.488 (4)0.910 (3)0.080*
H1A0.3963 (11)0.515 (6)0.916 (4)0.080*
U11U22U33U12U13U23
Zn10.0316 (3)0.0328 (3)0.0500 (3)−0.0002 (2)0.0009 (4)0.0007 (5)
O10.044 (2)0.0301 (18)0.094 (4)−0.0058 (15)−0.003 (2)0.003 (2)
O20.037 (2)0.042 (2)0.126 (5)−0.0053 (15)0.003 (3)0.012 (4)
O30.070 (3)0.048 (3)0.091 (3)0.011 (2)0.024 (3)0.023 (3)
O40.0391 (19)0.0318 (16)0.069 (2)0.0063 (13)0.002 (2)0.005 (2)
C30.032 (2)0.033 (2)0.040 (2)−0.0028 (17)0.009 (3)0.005 (3)
N20.034 (3)0.045 (3)0.050 (3)0.003 (2)−0.002 (2)0.001 (2)
N30.029 (3)0.062 (3)0.066 (3)0.002 (3)0.004 (2)0.012 (3)
N40.037 (3)0.054 (3)0.052 (3)0.000 (2)0.001 (2)0.002 (3)
N50.046 (3)0.072 (4)0.041 (3)0.002 (3)0.002 (2)0.008 (3)
C20.036 (2)0.034 (2)0.039 (3)−0.0024 (19)0.005 (3)0.004 (3)
C10.031 (2)0.037 (2)0.041 (2)0.0024 (18)0.006 (3)0.009 (3)
N10.035 (2)0.036 (2)0.047 (3)−0.0004 (15)−0.007 (3)−0.004 (2)
C50.028 (2)0.042 (3)0.045 (4)−0.008 (2)−0.001 (2)0.002 (2)
C40.035 (3)0.028 (2)0.046 (4)0.0025 (19)0.005 (2)0.003 (2)
C60.038 (3)0.030 (2)0.048 (3)−0.0060 (19)0.004 (2)−0.001 (2)
C70.040 (3)0.030 (3)0.042 (3)−0.002 (2)0.004 (2)0.004 (2)
C80.039 (3)0.038 (3)0.080 (5)0.003 (2)−0.002 (3)0.001 (3)
C90.040 (3)0.047 (3)0.092 (5)−0.014 (3)0.002 (3)0.008 (3)
C100.040 (4)0.046 (3)0.055 (3)−0.001 (3)−0.004 (3)0.008 (3)
C110.068 (5)0.050 (4)0.076 (5)0.001 (4)0.035 (4)0.012 (4)
C120.076 (6)0.063 (5)0.081 (5)−0.005 (5)0.015 (4)0.002 (4)
C130.048 (4)0.071 (4)0.047 (3)0.000 (3)0.007 (3)−0.002 (3)
C140.040 (3)0.078 (5)0.050 (3)0.004 (3)0.009 (3)0.010 (3)
C150.051 (4)0.099 (6)0.049 (4)−0.002 (4)0.004 (3)0.014 (4)
C160.048 (4)0.125 (8)0.066 (4)0.001 (4)0.005 (3)0.038 (5)
C170.056 (4)0.062 (5)0.063 (4)0.022 (4)0.006 (3)0.007 (4)
C180.048 (4)0.059 (4)0.052 (3)0.009 (3)0.005 (3)−0.013 (3)
C190.041 (4)0.102 (7)0.063 (5)−0.002 (5)0.008 (3)−0.012 (4)
O1W0.090 (2)0.092 (2)0.097 (2)−0.0007 (10)0.0000 (10)−0.0017 (10)
O3W0.094 (7)0.094 (7)0.093 (7)0.0002 (10)−0.0002 (10)0.0003 (10)
O3W'0.166 (14)0.166 (14)0.166 (14)0.0000 (10)0.0000 (10)0.0001 (10)
O2W'0.053 (4)0.053 (4)0.053 (4)0.0006 (10)0.0003 (10)−0.0006 (10)
O2W0.092 (7)0.091 (7)0.092 (7)0.0001 (10)0.0002 (10)0.0001 (10)
Zn1—O11.954 (4)C4—C71.505 (7)
Zn1—O4i1.965 (3)C8—H8A0.9600
Zn1—N21.994 (6)C8—H8B0.9600
Zn1—N4ii2.032 (6)C8—H8C0.9600
O1—C61.272 (6)C9—H9A0.9600
O2—C61.228 (7)C9—H9B0.9600
O3—C71.204 (7)C9—H9C0.9600
O4—C71.273 (7)C10—H100.9300
O4—Zn1iii1.965 (3)C11—C121.380 (12)
C3—C21.377 (7)C11—H110.9300
C3—C41.412 (6)C12—H120.9300
C3—H30.9300C13—C141.530 (9)
N2—C101.324 (9)C13—H13A0.9700
N2—C111.355 (10)C13—H13B0.9700
N3—C101.339 (8)C14—C151.515 (9)
N3—C131.418 (9)C14—H14A0.9700
N3—C121.420 (11)C14—H14B0.9700
N4—C171.291 (11)C15—C161.533 (11)
N4—C181.337 (9)C15—H15A0.9700
N4—Zn1iv2.032 (6)C15—H15B0.9700
N5—C191.308 (12)C16—H16A0.9700
N5—C171.340 (9)C16—H16B0.9700
N5—C161.480 (9)C17—H170.9300
C2—C11.403 (6)C18—C191.303 (10)
C2—C61.509 (7)C18—H180.9300
C1—N11.362 (6)C19—H190.9300
C1—C81.484 (7)O1W—H1B0.870 (10)
N1—C51.368 (7)O1W—H1A0.871 (10)
C5—C41.388 (7)O3W—O3W'1.73 (6)
C5—C91.489 (8)O2W'—O2W1.21 (3)
O1—Zn1—O4i110.09 (16)C5—C9—H9B109.5
O1—Zn1—N2110.4 (2)H9A—C9—H9B109.5
O4i—Zn1—N298.4 (2)C5—C9—H9C109.5
O1—Zn1—N4ii116.5 (2)H9A—C9—H9C109.5
O4i—Zn1—N4ii105.2 (2)H9B—C9—H9C109.5
N2—Zn1—N4ii114.5 (3)N2—C10—N3114.0 (6)
C6—O1—Zn1115.4 (4)N2—C10—H10123.0
C7—O4—Zn1iii118.2 (3)N3—C10—H10123.0
C2—C3—C4123.0 (4)N2—C11—C12111.8 (7)
C2—C3—H3118.5N2—C11—H11124.1
C4—C3—H3118.5C12—C11—H11124.1
C10—N2—C11104.4 (6)C11—C12—N3104.1 (7)
C10—N2—Zn1128.6 (5)C11—C12—H12128.0
C11—N2—Zn1126.5 (5)N3—C12—H12128.0
C10—N3—C13129.0 (6)N3—C13—C14113.7 (6)
C10—N3—C12105.7 (5)N3—C13—H13A108.8
C13—N3—C12125.3 (6)C14—C13—H13A108.8
C17—N4—C18107.0 (7)N3—C13—H13B108.8
C17—N4—Zn1iv121.5 (5)C14—C13—H13B108.8
C18—N4—Zn1iv131.5 (5)H13A—C13—H13B107.7
C19—N5—C17106.3 (6)C15—C14—C13114.0 (5)
C19—N5—C16128.5 (6)C15—C14—H14A108.8
C17—N5—C16125.2 (7)C13—C14—H14A108.8
C3—C2—C1118.4 (4)C15—C14—H14B108.8
C3—C2—C6117.7 (4)C13—C14—H14B108.8
C1—C2—C6123.6 (4)H14A—C14—H14B107.7
N1—C1—C2117.3 (4)C14—C15—C16112.2 (5)
N1—C1—C8115.7 (4)C14—C15—H15A109.2
C2—C1—C8126.9 (4)C16—C15—H15A109.2
C1—N1—C5125.7 (4)C14—C15—H15B109.2
N1—C5—C4117.8 (4)C16—C15—H15B109.2
N1—C5—C9115.8 (5)H15A—C15—H15B107.9
C4—C5—C9126.4 (5)N5—C16—C15112.6 (6)
C5—C4—C3117.6 (4)N5—C16—H16A109.1
C5—C4—C7122.8 (5)C15—C16—H16A109.1
C3—C4—C7119.4 (4)N5—C16—H16B109.1
O2—C6—O1122.9 (5)C15—C16—H16B109.1
O2—C6—C2119.7 (4)H16A—C16—H16B107.8
O1—C6—C2117.4 (5)N4—C17—N5109.5 (7)
O3—C7—O4126.0 (5)N4—C17—H17125.3
O3—C7—C4120.2 (5)N5—C17—H17125.3
O4—C7—C4113.7 (4)C19—C18—N4108.0 (8)
C1—C8—H8A109.5C19—C18—H18126.0
C1—C8—H8B109.5N4—C18—H18126.0
H8A—C8—H8B109.5C18—C19—N5109.2 (7)
C1—C8—H8C109.5C18—C19—H19125.4
H8A—C8—H8C109.5N5—C19—H19125.4
H8B—C8—H8C109.5H1B—O1W—H1A105 (4)
C5—C9—H9A109.5
D—H···AD—HH···AD···AD—H···A
O1W—H1B···O2v0.87 (4)1.99 (4)2.820 (9)160 (4)
O1W—H1A···N10.87 (3)1.95 (3)2.736 (10)149 (5)
Table 1

Selected bond lengths (Å)

Zn1—O11.954 (4)
Zn1—O4i1.965 (3)
Zn1—N21.994 (6)
Zn1—N4ii2.032 (6)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1B⋯O2iii0.87 (4)1.99 (4)2.820 (9)160 (4)
O1W—H1A⋯N10.87 (3)1.95 (3)2.736 (10)149 (5)

Symmetry code: (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Self-assembly of 2D-->2D interpenetrating coordination polymers showing polyrotaxane- and polycatenane-like motifs: influence of various ligands on topological structural diversity.

Authors:  Ya-Qian Lan; Shun-Li Li; Jun-Sheng Qin; Dong-Ying Du; Xin-Long Wang; Zhong-Min Su; Qiang Fu
Journal:  Inorg Chem       Date:  2008-10-24       Impact factor: 5.165

3.  Poly[bis-(μ-2,6-dimethyl-pyridinium-3,5-dicarboxyl-ato-κO:O)copper(II)].

Authors:  Hong-Kun Zhang; Yu-Hong Du; Tao Jiang; Bai-Yan Li; Guang-Feng Hou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  3 in total

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