Literature DB >> 22058703

Tris(2,2'-bi-1H-imidazole-κN,N)cobalt(II) hydrogen phosphate.

Zhiqiang Liang, Fuxiang Wang, Qihui Wu, Xia Zhi, Qinhe Pan.   

Abstract

The title compound, [Co(C(6)H(6)N(4))(3)]HPO(4), was synthesized under hydro-thermal conditions. In the cation, the Co(II) atom is octa-hedrally coordinated by six N atoms from three 2,2'-bi-1H-imidazole ligands [Co-N bond lengths are in the range 2.084 (5)-2.133 (6) Å]. Inter-molecular N-H⋯O hydrogen bonds form an extensive hydrogen-bonding network, which links cations and anions into a three-dimensional crystal structure.

Entities:  

Year:  2011        PMID: 22058703      PMCID: PMC3201263          DOI: 10.1107/S1600536811037299

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see Pan et al. (2005 ▶, 2008 ▶, 2010a ▶,b ▶, 2011 ▶); Rothammel et al. (1998 ▶); Stalder & Wilkinson (1997 ▶); Tong & Pan (2011 ▶); Wang et al. (2003a ▶,b ▶).

Experimental

Crystal data

[Co(C6H6N4)3]HPO4 M = 557.35 Monoclinic, a = 12.700 (3) Å b = 21.447 (4) Å c = 9.1140 (18) Å β = 95.84 (3)° V = 2469.6 (8) Å3 Z = 4 Mo Kα radiation μ = 0.81 mm−1 T = 293 K 0.20 × 0.17 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002 ▶) T min = 0.850, T max = 0.886 12597 measured reflections 5593 independent reflections 3373 reflections with I > 2σ(I) R int = 0.098

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.152 S = 1.06 5593 reflections 325 parameters 2 restraints H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 2755 Friedel pairs Flack parameter: −0.02 (2) Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811037299/aa2021sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037299/aa2021Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H6N4)3]HPO4F(000) = 1140
Mr = 557.35Dx = 1.499 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 12761 reflections
a = 12.700 (3) Åθ = 3.1–27.5°
b = 21.447 (4) ŵ = 0.81 mm1
c = 9.1140 (18) ÅT = 293 K
β = 95.84 (3)°Block, blue
V = 2469.6 (8) Å30.2 × 0.17 × 0.15 mm
Z = 4
Rigaku R-AXIS RAPID-S diffractometer5593 independent reflections
Radiation source: fine-focus sealed tube3373 reflections with I > 2σ(I)
graphiteRint = 0.098
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002)h = −16→16
Tmin = 0.850, Tmax = 0.886k = −27→27
12597 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.077H-atom parameters constrained
wR(F2) = 0.152w = 1/[σ2(Fo2) + (0.0453P)2] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.042
5593 reflectionsΔρmax = 0.40 e Å3
325 parametersΔρmin = −0.32 e Å3
2 restraintsAbsolute structure: Flack (1983), 2755 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.61255 (7)0.33459 (3)0.15859 (9)0.0466 (3)
P10.12445 (13)0.48617 (7)0.34051 (17)0.0397 (4)
O10.1291 (4)0.5348 (2)0.4686 (5)0.0560 (13)
H10.19000.53750.50770.067*
O20.1932 (4)0.5113 (2)0.2233 (4)0.0512 (12)
O30.0119 (4)0.4852 (3)0.2777 (6)0.0828 (17)
O40.1658 (4)0.4249 (2)0.4011 (5)0.0699 (15)
N10.4828 (5)0.3189 (3)0.2765 (7)0.0619 (18)
N20.3328 (5)0.3553 (3)0.3473 (7)0.0648 (18)
H20.27940.37920.35650.078*
N30.5206 (5)0.4153 (2)0.0992 (6)0.0513 (14)
N40.3842 (4)0.4723 (3)0.1484 (6)0.0566 (16)
H40.32740.48380.18470.068*
N50.7019 (4)0.3812 (2)0.3368 (6)0.0513 (15)
N60.8457 (5)0.4352 (3)0.4042 (7)0.0584 (16)
H6A0.90470.45440.39930.070*
N70.7434 (4)0.3656 (3)0.0530 (6)0.0477 (14)
N80.8950 (4)0.4176 (2)0.0763 (7)0.0482 (14)
H80.94730.43950.11500.058*
N90.6751 (5)0.2470 (3)0.2311 (8)0.0603 (17)
N100.6751 (6)0.1449 (3)0.1916 (9)0.074 (2)
H100.66360.10930.14980.089*
N110.5563 (4)0.2775 (3)−0.0218 (8)0.0625 (18)
N120.5553 (5)0.1820 (3)−0.1166 (9)0.077 (2)
H12A0.56520.1426−0.12440.092*
C10.4432 (7)0.2771 (4)0.3717 (12)0.095 (3)
H1A0.47480.23950.40150.114*
C20.3535 (7)0.2987 (4)0.4145 (12)0.097 (3)
H2A0.31180.27900.47870.116*
C30.4129 (5)0.3662 (3)0.2641 (8)0.0511 (18)
C40.4347 (5)0.4180 (3)0.1736 (8)0.0449 (17)
C50.4392 (7)0.5059 (4)0.0548 (10)0.078 (3)
H50.42260.54540.01770.094*
C60.5240 (6)0.4697 (3)0.0261 (9)0.063 (2)
H60.57560.4811−0.03420.076*
C70.7044 (7)0.3963 (3)0.4839 (9)0.064 (2)
H70.65290.38530.54470.077*
C80.7923 (8)0.4291 (4)0.5266 (9)0.071 (2)
H8A0.81280.44460.62050.086*
C90.7899 (5)0.4063 (3)0.2959 (8)0.0446 (16)
C100.8109 (5)0.3975 (3)0.1443 (8)0.0415 (16)
C110.8805 (6)0.3960 (3)−0.0667 (8)0.0520 (17)
H110.92540.4018−0.14000.062*
C120.7866 (6)0.3645 (3)−0.0789 (8)0.0562 (19)
H120.75630.3452−0.16430.067*
C130.7277 (7)0.2186 (4)0.3508 (9)0.070 (2)
H130.75830.23880.43480.083*
C140.7284 (8)0.1565 (4)0.3283 (12)0.078 (3)
H140.75930.12680.39330.094*
C150.6450 (5)0.2012 (3)0.1372 (9)0.057 (2)
C160.5860 (6)0.2179 (3)0.0014 (10)0.061 (2)
C170.5049 (8)0.2208 (5)−0.2230 (12)0.094 (3)
H170.47560.2088−0.31640.113*
C180.5058 (7)0.2797 (4)−0.1671 (12)0.086 (3)
H180.47810.3151−0.21580.103*
U11U22U33U12U13U23
Co10.0401 (4)0.0300 (4)0.0746 (6)−0.0043 (5)0.0292 (4)−0.0064 (5)
P10.0473 (10)0.0415 (9)0.0323 (8)−0.0023 (8)0.0134 (8)−0.0013 (8)
O10.075 (4)0.048 (3)0.046 (3)0.005 (3)0.012 (3)−0.004 (2)
O20.057 (3)0.051 (3)0.048 (3)−0.002 (2)0.014 (2)0.009 (2)
O30.058 (3)0.100 (4)0.091 (4)−0.007 (3)0.011 (3)−0.023 (3)
O40.104 (4)0.042 (3)0.068 (3)0.020 (3)0.028 (3)0.011 (2)
N10.053 (4)0.043 (3)0.098 (5)−0.005 (3)0.047 (4)0.000 (3)
N20.055 (4)0.047 (3)0.100 (5)−0.002 (3)0.043 (4)−0.002 (4)
N30.049 (3)0.045 (3)0.063 (4)0.004 (3)0.020 (3)0.001 (3)
N40.047 (4)0.060 (4)0.064 (4)0.018 (3)0.013 (3)0.009 (3)
N50.055 (4)0.038 (3)0.065 (4)−0.004 (3)0.026 (3)−0.007 (3)
N60.059 (4)0.054 (4)0.064 (4)−0.014 (3)0.016 (4)−0.006 (3)
N70.040 (3)0.048 (3)0.057 (4)−0.006 (3)0.016 (3)−0.004 (3)
N80.036 (3)0.044 (3)0.066 (4)−0.005 (2)0.016 (3)0.005 (3)
N90.057 (4)0.046 (4)0.084 (5)0.002 (3)0.038 (4)−0.004 (4)
N100.079 (5)0.034 (3)0.115 (6)−0.005 (3)0.036 (5)−0.005 (4)
N110.040 (3)0.040 (4)0.112 (6)−0.001 (3)0.026 (4)−0.015 (4)
N120.063 (4)0.038 (3)0.129 (6)−0.006 (3)0.012 (4)−0.022 (4)
C10.076 (6)0.051 (5)0.171 (9)0.006 (4)0.075 (7)0.029 (6)
C20.084 (6)0.053 (5)0.167 (10)0.006 (5)0.082 (7)0.029 (6)
C30.053 (4)0.035 (4)0.070 (5)−0.008 (3)0.028 (4)−0.011 (4)
C40.030 (4)0.046 (4)0.060 (5)0.002 (3)0.013 (3)−0.007 (3)
C50.086 (6)0.070 (6)0.084 (6)0.015 (5)0.037 (6)0.031 (5)
C60.060 (5)0.058 (5)0.077 (5)0.006 (4)0.033 (4)0.022 (4)
C70.079 (6)0.056 (5)0.062 (5)−0.003 (4)0.031 (5)−0.009 (4)
C80.089 (6)0.069 (6)0.060 (5)−0.010 (5)0.025 (5)−0.010 (4)
C90.037 (4)0.038 (4)0.060 (5)−0.001 (3)0.014 (4)0.006 (3)
C100.043 (4)0.032 (3)0.052 (4)−0.002 (3)0.019 (4)0.002 (3)
C110.043 (4)0.063 (5)0.052 (4)−0.009 (4)0.016 (4)0.000 (4)
C120.061 (5)0.055 (5)0.053 (5)−0.007 (4)0.009 (4)−0.007 (4)
C130.080 (6)0.058 (5)0.074 (6)−0.006 (4)0.023 (5)0.004 (4)
C140.090 (7)0.042 (5)0.107 (8)0.007 (4)0.029 (6)0.005 (5)
C150.046 (4)0.035 (4)0.094 (6)−0.003 (3)0.027 (4)−0.002 (4)
C160.041 (4)0.035 (4)0.111 (7)−0.005 (3)0.031 (5)−0.009 (5)
C170.081 (7)0.064 (6)0.134 (9)−0.013 (5)−0.007 (6)−0.029 (6)
C180.059 (6)0.079 (7)0.116 (8)−0.001 (5)−0.006 (6)0.003 (6)
Co1—N12.084 (5)N9—C151.332 (9)
Co1—N72.110 (5)N9—C131.364 (10)
Co1—N112.115 (7)N10—C151.346 (9)
Co1—N92.120 (6)N10—C141.379 (11)
Co1—N32.127 (6)N10—H100.8600
Co1—N52.133 (6)N11—C161.344 (9)
P1—O31.485 (6)N11—C181.412 (11)
P1—O41.500 (4)N12—C161.348 (10)
P1—O21.544 (4)N12—C171.384 (11)
P1—O11.563 (5)N12—H12A0.8600
O1—H10.8200C1—C21.325 (10)
N1—C31.344 (9)C1—H1A0.9300
N1—C11.378 (9)C2—H2A0.9300
N2—C31.350 (8)C3—C41.429 (9)
N2—C21.373 (9)C5—C61.373 (10)
N2—H20.8600C5—H50.9300
N3—C41.343 (8)C6—H60.9300
N3—C61.347 (8)C7—C81.343 (11)
N4—C41.337 (8)C7—H70.9300
N4—C51.363 (9)C8—H8A0.9300
N4—H40.8600C9—C101.446 (9)
N5—C91.327 (8)C11—C121.365 (9)
N5—C71.376 (8)C11—H110.9300
N6—C91.311 (8)C12—H120.9300
N6—C81.370 (9)C13—C141.347 (10)
N6—H6A0.8600C13—H130.9300
N7—C101.323 (8)C14—H140.9300
N7—C121.372 (8)C15—C161.426 (11)
N8—C101.358 (8)C17—C181.361 (11)
N8—C111.377 (9)C17—H170.9300
N8—H80.8600C18—H180.9300
N1—Co1—N7170.6 (2)C16—N12—H12A126.5
N1—Co1—N1194.9 (2)C17—N12—H12A126.5
N7—Co1—N1192.7 (2)C2—C1—N1109.8 (7)
N1—Co1—N989.3 (2)C2—C1—H1A125.1
N7—Co1—N997.7 (2)N1—C1—H1A125.1
N11—Co1—N979.4 (3)C1—C2—N2108.0 (7)
N1—Co1—N379.6 (2)C1—C2—H2A126.0
N7—Co1—N393.7 (2)N2—C2—H2A126.0
N11—Co1—N398.0 (2)N1—C3—N2110.6 (6)
N9—Co1—N3168.4 (2)N1—C3—C4118.0 (6)
N1—Co1—N594.0 (2)N2—C3—C4131.3 (7)
N7—Co1—N579.5 (2)N4—C4—N3110.6 (6)
N11—Co1—N5167.1 (2)N4—C4—C3131.2 (6)
N9—Co1—N591.4 (2)N3—C4—C3118.2 (6)
N3—Co1—N592.8 (2)N4—C5—C6106.4 (6)
O3—P1—O4114.6 (4)N4—C5—H5126.8
O3—P1—O2109.2 (3)C6—C5—H5126.8
O4—P1—O2111.0 (3)N3—C6—C5109.3 (6)
O3—P1—O1105.1 (3)N3—C6—H6125.4
O4—P1—O1109.0 (3)C5—C6—H6125.4
O2—P1—O1107.6 (3)C8—C7—N5110.0 (7)
P1—O1—H1109.5C8—C7—H7125.0
C3—N1—C1105.3 (6)N5—C7—H7125.0
C3—N1—Co1112.7 (5)C7—C8—N6106.3 (7)
C1—N1—Co1142.0 (5)C7—C8—H8A126.9
C3—N2—C2106.4 (6)N6—C8—H8A126.9
C3—N2—H2126.8N6—C9—N5112.7 (6)
C2—N2—H2126.8N6—C9—C10130.0 (6)
C4—N3—C6106.3 (6)N5—C9—C10117.3 (6)
C4—N3—Co1111.1 (4)N7—C10—N8111.5 (6)
C6—N3—Co1141.9 (5)N7—C10—C9119.8 (6)
C4—N4—C5107.4 (6)N8—C10—C9128.7 (7)
C4—N4—H4126.3C12—C11—N8106.0 (6)
C5—N4—H4126.3C12—C11—H11127.0
C9—N5—C7104.0 (6)N8—C11—H11127.0
C9—N5—Co1112.0 (5)C11—C12—N7110.2 (6)
C7—N5—Co1144.1 (5)C11—C12—H12124.9
C9—N6—C8107.0 (6)N7—C12—H12124.9
C9—N6—H6A126.5C14—C13—N9109.3 (8)
C8—N6—H6A126.5C14—C13—H13125.4
C10—N7—C12105.5 (5)N9—C13—H13125.4
C10—N7—Co1111.5 (4)C13—C14—N10107.8 (8)
C12—N7—Co1143.0 (5)C13—C14—H14126.1
C10—N8—C11106.8 (6)N10—C14—H14126.1
C10—N8—H8126.6N9—C15—N10111.8 (8)
C11—N8—H8126.6N9—C15—C16117.7 (7)
C15—N9—C13105.7 (6)N10—C15—C16130.5 (7)
C15—N9—Co1112.2 (6)N11—C16—N12111.3 (8)
C13—N9—Co1141.6 (6)N11—C16—C15119.3 (7)
C15—N10—C14105.5 (7)N12—C16—C15129.3 (7)
C15—N10—H10127.3C18—C17—N12108.0 (9)
C14—N10—H10127.3C18—C17—H17126.0
C16—N11—C18105.8 (7)N12—C17—H17126.0
C16—N11—Co1111.2 (6)C17—C18—N11107.9 (8)
C18—N11—Co1142.7 (6)C17—C18—H18126.1
C16—N12—C17107.0 (7)N11—C18—H18126.1
D—H···AD—HH···AD···AD—H···A
N2—H2···O40.861.822.678 (7)172.1
N4—H4···O20.861.872.717 (7)168.3
N6—H6A···O3i0.861.962.725 (8)148.3
N8—H8···O3i0.861.892.669 (8)149.3
N10—H10···O2ii0.862.232.887 (7)133.7
N10—H10···O4iii0.862.393.034 (9)132.5
N12—H12A···O4iii0.861.932.685 (8)146.0
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O40.861.822.678 (7)172.1
N4—H4⋯O20.861.872.717 (7)168.3
N6—H6A⋯O3i0.861.962.725 (8)148.3
N8—H8⋯O3i0.861.892.669 (8)149.3
N10—H10⋯O2ii0.862.232.887 (7)133.7
N10—H10⋯O4iii0.862.393.034 (9)132.5
N12—H12A⋯O4iii0.861.932.685 (8)146.0

Symmetry codes: (i) ; (ii) ; (iii) .

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