Literature DB >> 22057158

AURA: Atlas of UTR Regulatory Activity.

E Dassi1, A Malossini, A Re, T Mazza, T Tebaldi, L Caputi, A Quattrone.   

Abstract

SUMMARY: The Atlas of UTR Regulatory Activity (AURA) is a manually curated and comprehensive catalog of human mRNA untranslated regions (UTRs) and UTR regulatory annotations. Through its intuitive web interface, it provides full access to a wealth of information on UTRs that integrates phylogenetic conservation, RNA sequence and structure data, single nucleotide variation, gene expression and gene functional descriptions from literature and specialized databases. AVAILABILITY: http://aura.science.unitn.it CONTACT: aura@science.unitn.it; dassi@science.unitn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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Year:  2011        PMID： 22057158     DOI： 10.1093/bioinformatics/btr608

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  18 in total

1.  Postnatal dynamics of Zeb2 expression in rat brain: analysis of novel 3' UTR sequence reveals a miR-9 interacting site.

Authors:  Klara Kropivšek; Jasmine Pickford; David A Carter
Journal:  J Mol Neurosci       Date:  2013-10-25       Impact factor: 3.444

Review 2.  Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression.

Authors:  Erik Dassi; Alessandro Quattrone
Journal:  RNA Biol       Date:  2012-09-20       Impact factor: 4.652

3.  Optimizing RNA structures by sequence extensions using RNAcop.

Authors:  Nikolai Hecker; Mikkel Christensen-Dalsgaard; Stefan E Seemann; Jakob H Havgaard; Peter F Stadler; Ivo L Hofacker; Henrik Nielsen; Jan Gorodkin
Journal:  Nucleic Acids Res       Date:  2015-08-17       Impact factor: 16.971

4.  DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.

Authors:  Kai Blin; Christoph Dieterich; Ricardo Wurmus; Nikolaus Rajewsky; Markus Landthaler; Altuna Akalin
Journal:  Nucleic Acids Res       Date:  2014-11-21       Impact factor: 16.971

5.  Protein-specific prediction of mRNA binding using RNA sequences, binding motifs and predicted secondary structures.

Authors:  Carmen M Livi; Enrico Blanzieri
Journal:  BMC Bioinformatics       Date:  2014-04-29       Impact factor: 3.169

6.  Scan for Motifs: a webserver for the analysis of post-transcriptional regulatory elements in the 3' untranslated regions (3' UTRs) of mRNAs.

Authors:  Ambarish Biswas; Chris M Brown
Journal:  BMC Bioinformatics       Date:  2014-06-08       Impact factor: 3.169

7.  Constitutive patterns of gene expression regulated by RNA-binding proteins.

Authors:  Davide Cirillo; Domenica Marchese; Federico Agostini; Carmen Maria Livi; Teresa Botta-Orfila; Gian Gaetano Tartaglia
Journal:  Genome Biol       Date:  2014-01-02       Impact factor: 13.583

8.  Hyper conserved elements in vertebrate mRNA 3'-UTRs reveal a translational network of RNA-binding proteins controlled by HuR.

Authors:  Erik Dassi; Paola Zuccotti; Sara Leo; Alessandro Provenzani; Michael Assfalg; Mariapina D'Onofrio; Paola Riva; Alessandro Quattrone
Journal:  Nucleic Acids Res       Date:  2013-02-01       Impact factor: 16.971

9.  tRanslatome: an R/Bioconductor package to portray translational control.

Authors:  Toma Tebaldi; Erik Dassi; Galena Kostoska; Gabriella Viero; Alessandro Quattrone
Journal:  Bioinformatics       Date:  2013-11-12       Impact factor: 6.937

10.  APADB: a database for alternative polyadenylation and microRNA regulation events.

Authors:  Sören Müller; Lukas Rycak; Fabian Afonso-Grunz; Peter Winter; Adam M Zawada; Ewa Damrath; Jessica Scheider; Juliane Schmäh; Ina Koch; Günter Kahl; Björn Rotter
Journal:  Database (Oxford)       Date:  2014-07-22       Impact factor: 3.451
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