Literature DB >> 22057041

Sparse-grid-based adaptive model predictive control of HL60 cellular differentiation.

Sarah L Noble1, Lindsay E Wendel, Maia M Donahue, Gregery T Buzzard, Ann E Rundell.   

Abstract

Quantitative methods such as model-based predictive control are known to facilitate the design of strategies to manipulate biological systems. This study develops a sparse-grid-based adaptive model predictive control (MPC) strategy to direct HL60 cellular differentiation. Sparse-grid sampling and interpolation support a computationally efficient adaptive MPC scheme in which multiple data-consistent regions of the model parameter space are identified and used to calculate a control compromise. The algorithm is evaluated in silico with structural model mismatch. Simulations demonstrate how the multiscenario control strategy more effectively manages the mismatch compared to a single scenario approach. Furthermore, the controller is evaluated in vitro to differentiate HL60 cells in both normal and perturbed environments. The controller-derived input sequence successfully achieves and sustains the specified target level of granulocytes when implemented in the laboratory. The results and analysis given here imply that adoption of this experiment planning technique to direct cell differentiation within more complex tissue engineered constructs will require the use of a reasonably accurate mathematical model and an extension of this algorithm to multiobjective controller design.
© 2011 IEEE

Mesh:

Year:  2011        PMID: 22057041     DOI: 10.1109/TBME.2011.2174361

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  2 in total

1.  Deep learning for the fully automated segmentation of the inner ear on MRI.

Authors:  Raymond van de Berg; Philippe Lambin; Akshayaa Vaidyanathan; Marly F J A van der Lubbe; Ralph T H Leijenaar; Marc van Hoof; Fadila Zerka; Benjamin Miraglio; Sergey Primakov; Alida A Postma; Tjasse D Bruintjes; Monique A L Bilderbeek; Hammer Sebastiaan; Patrick F M Dammeijer; Vincent van Rompaey; Henry C Woodruff; Wim Vos; Seán Walsh
Journal:  Sci Rep       Date:  2021-02-03       Impact factor: 4.379

2.  Multiple model-informed open-loop control of uncertain intracellular signaling dynamics.

Authors:  Jeffrey P Perley; Judith Mikolajczak; Marietta L Harrison; Gregery T Buzzard; Ann E Rundell
Journal:  PLoS Comput Biol       Date:  2014-04-10       Impact factor: 4.475

  2 in total

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