Literature DB >> 22056468

Cryo-EM study of Hepatitis B virus core antigen capsids decorated with antibodies from a human patient.

Eaazhisai Kandiah1, Norman R Watts, Naiqian Cheng, Giovanni Cardone, Stephen J Stahl, Theo Heller, T Jake Liang, Paul T Wingfield, Alasdair C Steven.   

Abstract

The capsid (core antigen, HBcAg) is one of three major antigens present in patients infected with Hepatitis B virus. The capsids are icosahedral particles, whose most prominent features are spikes that extend 25 Å out from the contiguous "floor". At the spike tip are two copies of the "immunodominant loop". Previously, the epitopes of seven murine monoclonal antibodies have been identified by cryo-EM analysis of Fab-labeled capsids. All but one are conformational and all but one map around the spike tip. The exception, which is also the tightest-binder, straddles an inter-molecular interface on the floor. Seeking to relate these observations to the immunological response of infected humans, we isolated anti-cAg antibodies from a patient, prepared Fabs, and analyzed their binding to capsids. A priori, one possibility was that many different Fabs would give an undifferentiated continuum of Fab-related density. In fact, the density observed was highly differentiated and could be reproduced by modeling with just five Fabs, three binding to the spike and two to the floor. These results show that epitopes on the floor, far (~30 Å) from the immunodominant loop, are clinically relevant and that murine anti-cAg antibodies afford a good model for the human system. Published by Elsevier Inc.

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Year:  2011        PMID: 22056468      PMCID: PMC3261347          DOI: 10.1016/j.jsb.2011.10.003

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  38 in total

1.  Native hepatitis B virions and capsids visualized by electron cryomicroscopy.

Authors:  Kelly A Dryden; Stefan F Wieland; Christina Whitten-Bauer; John L Gerin; Francis V Chisari; Mark Yeager
Journal:  Mol Cell       Date:  2006-06-23       Impact factor: 17.970

2.  In vitro selection and characterization of DARPins and Fab fragments for the co-crystallization of membrane proteins: The Na(+)-citrate symporter CitS as an example.

Authors:  Thomas Huber; Daniel Steiner; Daniela Röthlisberger; Andreas Plückthun
Journal:  J Struct Biol       Date:  2007-02-03       Impact factor: 2.867

3.  Conventional and immunoelectron microscopy of mitochondria.

Authors:  Edward M Perkins; J Michael McCaffery
Journal:  Methods Mol Biol       Date:  2007

4.  Hepatitis B virus capsid: localization of the putative immunodominant loop (residues 78 to 83) on the capsid surface, and implications for the distinction between c and e-antigens.

Authors:  J F Conway; N Cheng; A Zlotnick; S J Stahl; P T Wingfield; D M Belnap; U Kanngiesser; M Noah; A C Steven
Journal:  J Mol Biol       Date:  1998-06-26       Impact factor: 5.469

5.  Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

Authors:  J F Conway; N Cheng; A Zlotnick; P T Wingfield; S J Stahl; A C Steven
Journal:  Nature       Date:  1997-03-06       Impact factor: 49.962

6.  Hepatitis core antigen produced in Escherichia coli: subunit composition, conformational analysis, and in vitro capsid assembly.

Authors:  P T Wingfield; S J Stahl; R W Williams; A C Steven
Journal:  Biochemistry       Date:  1995-04-18       Impact factor: 3.162

7.  Capsid fine structure of T-even bacteriophages. Binding and localization of two dispensable capsid proteins into the P23* surface lattice.

Authors:  U Aebi; R van Driel; R K Bijlenga; B ten Heggeler; R van den Broek; A C Steven; P R Smith
Journal:  J Mol Biol       Date:  1977-03-15       Impact factor: 5.469

Review 8.  Hepatitis B virus core particles as epitope carriers.

Authors:  P Pumpens; G P Borisova; R A Crowther; E Grens
Journal:  Intervirology       Date:  1995       Impact factor: 1.763

9.  Generation and characterization of a chimeric rabbit/human Fab for co-crystallization of HIV-1 Rev.

Authors:  Stephen J Stahl; Norman R Watts; Christoph Rader; Michael A DiMattia; Rose G Mage; Ira Palmer; Joshua D Kaufman; Jonathan M Grimes; David I Stuart; Alasdair C Steven; Paul T Wingfield
Journal:  J Mol Biol       Date:  2010-02-04       Impact factor: 5.469

10.  Distinct monoclonal antibodies separately label the hexons or the pentons of herpes simplex virus capsid.

Authors:  B L Trus; W W Newcomb; F P Booy; J C Brown; A C Steven
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-01       Impact factor: 11.205

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  7 in total

Review 1.  Research advances in hydrogen-deuterium exchange mass spectrometry for protein epitope mapping.

Authors:  Haofeng Sun; Lingyun Ma; Leyu Wang; Peng Xiao; Hongmei Li; Min Zhou; Dewei Song
Journal:  Anal Bioanal Chem       Date:  2021-01-06       Impact factor: 4.142

2.  Sizing up large protein complexes by electrospray ionisation-based electrophoretic mobility and native mass spectrometry: morphology selective binding of Fabs to hepatitis B virus capsids.

Authors:  Jessica Z Bereszczak; Marlene Havlik; Victor U Weiss; Martina Marchetti-Deschmann; Esther van Duijn; Norman R Watts; Paul T Wingfield; Guenter Allmaier; Alasdair C Steven; Albert J R Heck
Journal:  Anal Bioanal Chem       Date:  2013-12-20       Impact factor: 4.142

3.  Fabs enable single particle cryoEM studies of small proteins.

Authors:  Shenping Wu; Agustin Avila-Sakar; JungMin Kim; David S Booth; Charles H Greenberg; Andrea Rossi; Maofu Liao; Xueming Li; Akram Alian; Sarah L Griner; Narinobu Juge; Yadong Yu; Claudia M Mergel; Javier Chaparro-Riggers; Pavel Strop; Robert Tampé; Robert H Edwards; Robert M Stroud; Charles S Craik; Yifan Cheng
Journal:  Structure       Date:  2012-04-03       Impact factor: 5.006

4.  Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies.

Authors:  Shabih Shakeel; Brenda M Westerhuis; Ari Ora; Gerrit Koen; Arjen Q Bakker; Yvonne Claassen; Koen Wagner; Tim Beaumont; Katja C Wolthers; Sarah J Butcher
Journal:  J Virol       Date:  2015-07-08       Impact factor: 5.103

5.  Specificity of an anti-capsid antibody associated with Hepatitis B Virus-related acute liver failure.

Authors:  Weimin Wu; Zhaochun Chen; Naiqian Cheng; Norman R Watts; Stephen J Stahl; Patrizia Farci; Robert H Purcell; Paul T Wingfield; Alasdair C Steven
Journal:  J Struct Biol       Date:  2012-10-16       Impact factor: 2.867

6.  Epitope-distal effects accompany the binding of two distinct antibodies to hepatitis B virus capsids.

Authors:  Jessica Z Bereszczak; Rebecca J Rose; Esther van Duijn; Norman R Watts; Paul T Wingfield; Alasdair C Steven; Albert J R Heck
Journal:  J Am Chem Soc       Date:  2013-04-18       Impact factor: 15.419

7.  Antigenic switching of hepatitis B virus by alternative dimerization of the capsid protein.

Authors:  Michael A DiMattia; Norman R Watts; Stephen J Stahl; Jonathan M Grimes; Alasdair C Steven; David I Stuart; Paul T Wingfield
Journal:  Structure       Date:  2012-12-06       Impact factor: 5.006

  7 in total

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