Literature DB >> 22052486

Detecting "silent" allosteric coupling.

Harvey F Fisher1.   

Abstract

Using isothermal calorimetry (ITC), we have found one case where a well-characterized allosteric activator showed no sign of allostery in its ΔG° of binding to successive sites on multiple subunits and another case where successive binding showed no ΔG° binding allostery but did show large entropy-compensated flip-flopping enthalpy changes. This behavior, which we have termed "isoergonic cooperativity" and others have referred to as "silent coupling" is quite simply explained by basic linkage theory when reactions are considered beyond the ΔG° level. Thus, direct calorimetric determination of all thermodynamic parameters including ΔH°, ΔS°, ΔG°, ΔC (p)°, and d(ΔC (p)°/dt) provides a more informative depiction of a ligand binding event and its consequences than does the mere measurement of ΔG° alone. We further discuss the benefits and limitations of methods that have previously been used to study silent coupling. In particular, ITC is free of the numerous pitfalls inherent in the application of van't Hoff and Årrhenius plots to allosteric phenomena. Aside from having a 30-fold advantage in precision, ITC is capable of measuring changes in enthalpy directly at five more levels of mathematical differentiation than are available to van't Hoff type approaches.

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Year:  2012        PMID: 22052486     DOI: 10.1007/978-1-61779-334-9_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

Review 1.  Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design.

Authors:  John D Chodera; David L Mobley
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

2.  Bacterial Thymidylate Synthase Binds Two Molecules of Substrate and Cofactor without Cooperativity.

Authors:  Paul J Sapienza; Bradley T Falk; Andrew L Lee
Journal:  J Am Chem Soc       Date:  2015-11-09       Impact factor: 15.419

Review 3.  What Mutagenesis Can and Cannot Reveal About Allostery.

Authors:  Gerald M Carlson; Aron W Fenton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  Widespread Perturbation of Function, Structure, and Dynamics by a Conservative Single-Atom Substitution in Thymidylate Synthase.

Authors:  Paul J Sapienza; Andrew L Lee
Journal:  Biochemistry       Date:  2016-09-30       Impact factor: 3.162

5.  H/D Exchange Characterization of Silent Coupling: Entropy-Enthalpy Compensation in Allostery.

Authors:  Charulata B Prasannan; Aleksandra Gmyrek; Tyler A Martin; Maria T Villar; Antonio Artigues; James Ching Lee; Aron W Fenton
Journal:  Biophys J       Date:  2020-05-20       Impact factor: 4.033

Review 6.  Thermodynamic and NMR Assessment of Ligand Cooperativity and Intersubunit Communication in Symmetric Dimers: Application to Thymidylate Synthase.

Authors:  Andrew L Lee; Paul J Sapienza
Journal:  Front Mol Biosci       Date:  2018-05-25
  6 in total

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