Literature DB >> 22048277

Probabilistic RNA partitioning generates transient increases in the normalized variance of RNA numbers in synchronized populations of Escherichia coli.

Jason Lloyd-Price1, Maria Lehtivaara, Meenakshisundaram Kandhavelu, Sharif Chowdhury, Anantha-Barathi Muthukrishnan, Olli Yli-Harja, Andre S Ribeiro.   

Abstract

We explore the effects of probabilistic RNA partitioning during cell division on the normalized variance of RNA numbers across generations of bacterial populations. We first characterize these effects in model cell populations, where gene expression is modeled as a delayed stochastic process, as a function of the synchrony in cell division, the rate of division, and the RNA degradation rate. We further explore the additional variance that arises if the partitioning is biased. Next, in Escherichia coli cells expressing RNA tagged with MS2d-GFP, we measured the normalized variance of RNA numbers across several generations, with cell divisions synchronized by heat shock. We show that synchronized cell populations exhibit transient increases in normalized variance following cell divisions, as predicted by the model, which are not observed in unsynchronized populations. We conclude that errors in partitioning of RNA molecules generate diversity between the offspring of individual bacteria and thus constitute a form of reproductive bet-hedging.

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Year:  2011        PMID: 22048277     DOI: 10.1039/c1mb05100h

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  7 in total

1.  Asymmetric disposal of individual protein aggregates in Escherichia coli, one aggregate at a time.

Authors:  Jason Lloyd-Price; Antti Häkkinen; Meenakshisundaram Kandhavelu; Ines J Marques; Sharif Chowdhury; Eero Lihavainen; Olli Yli-Harja; Andre S Ribeiro
Journal:  J Bacteriol       Date:  2012-01-27       Impact factor: 3.490

2.  In vivo kinetics of segregation and polar retention of MS2-GFP-RNA complexes in Escherichia coli.

Authors:  Abhishekh Gupta; Jason Lloyd-Price; Ramakanth Neeli-Venkata; Samuel M D Oliveira; Andre S Ribeiro
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

3.  Cell-to-cell diversity in a synchronized Chlamydomonas culture as revealed by single-cell analyses.

Authors:  Andreas Garz; Michael Sandmann; Michael Rading; Sascha Ramm; Ralf Menzel; Martin Steup
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

4.  Dynamics of transcription driven by the tetA promoter, one event at a time, in live Escherichia coli cells.

Authors:  Anantha-Barathi Muthukrishnan; Meenakshisundaram Kandhavelu; Jason Lloyd-Price; Fedor Kudasov; Sharif Chowdhury; Olli Yli-Harja; Andre S Ribeiro
Journal:  Nucleic Acids Res       Date:  2012-06-22       Impact factor: 16.971

5.  Origins of transcriptional transition: balance between upstream and downstream regulatory gene sequences.

Authors:  Adrien Sala; Muhammad Shoaib; Olga Anufrieva; Gnanavel Mutharasu; Olli Yli-Harja; Meenakshisundaram Kandhavelu
Journal:  MBio       Date:  2015-01-27       Impact factor: 7.867

6.  In vivo transcription kinetics of a synthetic gene uninvolved in stress-response pathways in stressed Escherichia coli cells.

Authors:  Anantha-Barathi Muthukrishnan; Antti Martikainen; Ramakanth Neeli-Venkata; Andre S Ribeiro
Journal:  PLoS One       Date:  2014-09-30       Impact factor: 3.240

Review 7.  Illuminating Messengers: An Update and Outlook on RNA Visualization in Bacteria.

Authors:  Lieke A van Gijtenbeek; Jan Kok
Journal:  Front Microbiol       Date:  2017-06-22       Impact factor: 5.640

  7 in total

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