Literature DB >> 22044148

Understanding pre-structured motifs (PreSMos) in intrinsically unfolded proteins.

Si-Hyung Lee1, Do-Hyoung Kim, Joan J Han, Eun-Ji Cha, Ji-Eun Lim, Ye-Jin Cho, Chewook Lee, Kyou-Hoon Han.   

Abstract

Intrinsically unfolded proteins (IUPs) do not obey the golden rule of structural biology, 3D structure = function, as they manifest their inherent functions without resorting to three-dimensional structures. Absence of a compact globular topology in these proteins strongly implies that their ligand recognition processes should involve factors other than spatially well-defined binding pockets. Heteronuclear multidimensional (HetMulD) NMR spectroscopy assisted with a stable isotope labeling technology is a powerful tool for quantitatively investigating detailed structural features in IUPs. In particular, it allows us to delineate the presence and locations of pre-structured motifs (PreSMos) on a per-residue basis. PreSMos are the transient local structural elements that presage target-bound conformations and act as specificity determinants for IUP recognition by target proteins. Here, we present a brief chronicle of HetMulD NMR studies on IUPs carried out over the past two decades along with a discussion on the functional significance of PreSMos in IUPs.
© 2012 Bentham Science Publishers

Mesh:

Substances:

Year:  2012        PMID: 22044148     DOI: 10.2174/138920312799277974

Source DB:  PubMed          Journal:  Curr Protein Pept Sci        ISSN: 1389-2037            Impact factor:   3.272


  33 in total

1.  Using NMR Chemical Shifts to Determine Residue-Specific Secondary Structure Populations for Intrinsically Disordered Proteins.

Authors:  Wade M Borcherds; Gary W Daughdrill
Journal:  Methods Enzymol       Date:  2018-10-22       Impact factor: 1.600

Review 2.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

3.  The Unstructured N-terminal Region of Arabidopsis Group 4 Late Embryogenesis Abundant (LEA) Proteins Is Required for Folding and for Chaperone-like Activity under Water Deficit.

Authors:  Cesar L Cuevas-Velazquez; Gloria Saab-Rincón; José Luis Reyes; Alejandra A Covarrubias
Journal:  J Biol Chem       Date:  2016-03-22       Impact factor: 5.157

4.  Mapping low-affinity/high-specificity peptide-protein interactions using ligand-footprinting mass spectrometry.

Authors:  Benjamin W Parker; Edward J Goncz; David T Krist; Alexander V Statsyuk; Alexey I Nesvizhskii; Eric L Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-02       Impact factor: 11.205

5.  Structural characterization of an intrinsically unfolded mini-HBX protein from hepatitis B virus.

Authors:  Si-Hyung Lee; Eun-Ji Cha; Ji-Eun Lim; Soon-Hwan Kwon; Do-Hyoung Kim; Hyeseong Cho; Kyou-Hoon Han
Journal:  Mol Cells       Date:  2012-07-20       Impact factor: 5.034

6.  Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.

Authors:  Alessandro Piai; Eduardo O Calçada; Thomas Tarenzi; Alessandro Del Grande; Mihaly Varadi; Peter Tompa; Isabella C Felli; Roberta Pierattelli
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

7.  Uncoupling the Folding and Binding of an Intrinsically Disordered Protein.

Authors:  Anusha Poosapati; Emily Gregory; Wade M Borcherds; Lucia B Chemes; Gary W Daughdrill
Journal:  J Mol Biol       Date:  2018-06-08       Impact factor: 5.469

Review 8.  Classification of intrinsically disordered regions and proteins.

Authors:  Robin van der Lee; Marija Buljan; Benjamin Lang; Robert J Weatheritt; Gary W Daughdrill; A Keith Dunker; Monika Fuxreiter; Julian Gough; Joerg Gsponer; David T Jones; Philip M Kim; Richard W Kriwacki; Christopher J Oldfield; Rohit V Pappu; Peter Tompa; Vladimir N Uversky; Peter E Wright; M Madan Babu
Journal:  Chem Rev       Date:  2014-04-29       Impact factor: 60.622

9.  A Proline-Tryptophan Turn in the Intrinsically Disordered Domain 2 of NS5A Protein Is Essential for Hepatitis C Virus RNA Replication.

Authors:  Marie Dujardin; Vanesa Madan; Roland Montserret; Puneet Ahuja; Isabelle Huvent; Helene Launay; Arnaud Leroy; Ralf Bartenschlager; François Penin; Guy Lippens; Xavier Hanoulle
Journal:  J Biol Chem       Date:  2015-06-17       Impact factor: 5.157

Review 10.  Viewing SARS-CoV-2 Nucleocapsid Protein in Terms of Molecular Flexibility.

Authors:  Tatsuhito Matsuo
Journal:  Biology (Basel)       Date:  2021-05-21
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.