Literature DB >> 22044141

The probe rules in single particle tracking.

Mathias P Clausen1, B Christoffer Lagerholm.   

Abstract

Single particle tracking (SPT) enables light microscopy at a sub-diffraction limited spatial resolution by a combination of imaging at low molecular labeling densities and computational image processing. SPT and related single molecule imaging techniques have found a rapidly expanded use within the life sciences. This expanded use is due to an increased demand and requisite for developing a comprehensive understanding of the spatial dynamics of bio-molecular interactions at a spatial scale that is equivalent to the size of the molecules themselves, as well as by the emergence of new imaging techniques and probes that have made historically very demanding and specialized bio-imaging techniques more easily accessible and achievable. SPT has in particular found extensive use for analyzing the molecular organization of biological membranes. From these and other studies using complementary techniques it has been determined that the organization of native plasma membranes is heterogeneous over a very large range of spatial and temporal scales. The observed heterogeneities in the organization have the practical consequence that the SPT results in investigations of native plasma membranes are time dependent. Furthermore, because the accessible time dynamics, and also the spatial resolution, in an SPT experiment is mainly dependent on the luminous brightness and photostability of the particular SPT probe that is used, available SPT results are ultimately dependent on the SPT probes. The focus of this review is on the impact that the SPT probe has on the experimental results in SPT.

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Year:  2011        PMID: 22044141     DOI: 10.2174/138920311798841672

Source DB:  PubMed          Journal:  Curr Protein Pept Sci        ISSN: 1389-2037            Impact factor:   3.272


  19 in total

1.  Single-Particle Diffusion Characterization by Deep Learning.

Authors:  Naor Granik; Lucien E Weiss; Elias Nehme; Maayan Levin; Michael Chein; Eran Perlson; Yael Roichman; Yoav Shechtman
Journal:  Biophys J       Date:  2019-06-22       Impact factor: 4.033

Review 2.  Wanted: a positive control for anomalous subdiffusion.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2012-12-18       Impact factor: 4.033

3.  Segmentation of 3D Trajectories Acquired by TSUNAMI Microscope: An Application to EGFR Trafficking.

Authors:  Yen-Liang Liu; Evan P Perillo; Cong Liu; Peter Yu; Chao-Kai Chou; Mien-Chie Hung; Andrew K Dunn; Hsin-Chih Yeh
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

4.  TRAIT2D: a Software for Quantitative Analysis of Single Particle Diffusion Data.

Authors:  Francesco Reina; John M A Wigg; Mariia Dmitrieva; Bela Vogler; Joël Lefebvre; Jens Rittscher; Christian Eggeling
Journal:  F1000Res       Date:  2021-08-20

5.  Single molecule tracking of bacterial cell surface cytochromes reveals dynamics that impact long-distance electron transport.

Authors:  Grace W Chong; Sahand Pirbadian; Yunke Zhao; Lori A Zacharoff; Fabien Pinaud; Mohamed Y El-Naggar
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-03       Impact factor: 12.779

6.  Tracking Single Molecules in Biomembranes: Is Seeing Always Believing?

Authors:  Yanqi Yu; Miao Li; Yan Yu
Journal:  ACS Nano       Date:  2019-10-07       Impact factor: 15.881

7.  Monte Carlo simulations of protein micropatterning in biomembranes: effects of immobile sticky obstacles.

Authors:  Andreas M Arnold; Eva Sevcsik; Gerhard J Schütz
Journal:  J Phys D Appl Phys       Date:  2016-08-09       Impact factor: 3.207

Review 8.  From Dynamics to Membrane Organization: Experimental Breakthroughs Occasion a "Modeling Manifesto".

Authors:  Edward Lyman; Chia-Lung Hsieh; Christian Eggeling
Journal:  Biophys J       Date:  2018-07-21       Impact factor: 4.033

9.  Cortical actin networks induce spatio-temporal confinement of phospholipids in the plasma membrane--a minimally invasive investigation by STED-FCS.

Authors:  Débora M Andrade; Mathias P Clausen; Jan Keller; Veronika Mueller; Congying Wu; James E Bear; Stefan W Hell; B Christoffer Lagerholm; Christian Eggeling
Journal:  Sci Rep       Date:  2015-06-29       Impact factor: 4.379

10.  Multi-color single particle tracking with quantum dots.

Authors:  Eva C Arnspang; Jonathan R Brewer; B Christoffer Lagerholm
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

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