Literature DB >> 22038975

Genome sequence of Rhodococcus erythropolis XP, a biodesulfurizing bacterium with industrial potential.

Fei Tao1, Peng Zhao, Qian Li, Fei Su, Bo Yu, Cuiqing Ma, Hongzhi Tang, Cui Tai, Geng Wu, Ping Xu.   

Abstract

Rhodococcus erythropolis strains have shown excellent characteristics in petroleum oil biodesulfurization. Here we present the first announcement of the draft genome sequence of an efficient biodesulfurizing bacterium named R. erythropolis XP (7,229,582 bp). The biodesulfurizing genes dszABC are located on a plasmid, while the flavin reductase gene dszD is located on the chromosome.

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Year:  2011        PMID： 22038975      PMCID： PMC3209222          DOI： 10.1128/JB.06154-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

Review 1.  Microbial biocatalyst developments to upgrade fossil fuels.

Authors:  John J Kilbane
Journal:  Curr Opin Biotechnol       Date:  2006-05-04       Impact factor: 9.740

2.  Simultaneous biodetoxification of S, N, and O pollutants by engineering of a carbazole-degrading gene cassette in a recombinant biocatalyst.

Authors:  Bo Yu; Cuiqing Ma; Wenjuan Zhou; Shanshan Zhu; Ying Wang; Jingyao Qu; Fuli Li; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2006-08-25       Impact factor: 4.792

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 4.  Recent developments in biodesulfurization of fossil fuels.

Authors:  Ping Xu; Jinhui Feng; Bo Yu; Fuli Li; Cuiqing Ma
Journal:  Adv Biochem Eng Biotechnol       Date:  2009       Impact factor: 2.635

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

Review 6.  Microbial degradation of sulfur, nitrogen and oxygen heterocycles.

Authors:  Ping Xu; Bo Yu; Fu Li Li; Xiao Feng Cai; Cui Qing Ma
Journal:  Trends Microbiol       Date:  2006-07-24       Impact factor: 17.079

7.  An oil-degrading bacterium: Rhodococcus erythropolis strain 3C-9 and its biosurfactants.

Authors:  F Peng; Z Liu; L Wang; Z Shao
Journal:  J Appl Microbiol       Date:  2007-06       Impact factor: 3.772

8.  Microbial desulfurization of dibenzothiophene: a sulfur-specific pathway.

Authors:  J R Gallagher; E S Olson; D C Stanley
Journal:  FEMS Microbiol Lett       Date:  1993-02-15       Impact factor: 2.742

9.  Biodesulfurization of water-soluble coal-derived material by Rhodococcus rhodochrous IGTS8.

Authors:  J J Kilbane; K Jackowski
Journal:  Biotechnol Bioeng       Date:  1992-11       Impact factor: 4.530

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  5 in total

1.  Core genome and plasmidome of the quorum-quenching bacterium Rhodococcus erythropolis.

Authors:  Anthony Kwasiborski; Samuel Mondy; Teik-Min Chong; Kok-Gan Chan; Amélie Beury-Cirou; Denis Faure
Journal:  Genetica       Date:  2015-02-13       Impact factor: 1.082

2.  Escherichia coli transcription termination factor NusA: heat-induced oligomerization and chaperone activity.

Authors:  Kun Li; Tianyi Jiang; Bo Yu; Limin Wang; Chao Gao; Cuiqing Ma; Ping Xu; Yanhe Ma
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

3.  Deletion of the gene encoding the reductase component of 3-ketosteroid 9α-hydroxylase in Rhodococcus equi USA-18 disrupts sterol catabolism, leading to the accumulation of 3-oxo-23,24-bisnorchola-1,4-dien-22-oic acid and 1,4-androstadiene-3,17-dione.

Authors:  Chin-Hsing Yeh; Yung-Shun Kuo; Che-Ming Chang; Wen-Hsiung Liu; Meei-Ling Sheu; Menghsiao Meng
Journal:  Microb Cell Fact       Date:  2014-09-09       Impact factor: 5.328

4.  Novel antibiofilm chemotherapies target nitrogen from glutamate and glutamine.

Authors:  Tal Hassanov; Iris Karunker; Nitai Steinberg; Ayelet Erez; Ilana Kolodkin-Gal
Journal:  Sci Rep       Date:  2018-05-08       Impact factor: 4.379

5.  Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Rhodococcus Strain IGTS8.

Authors:  Dean Thompson; Valérie Cognat; Michael Goodfellow; Sandrine Koechler; Dimitri Heintz; Christine Carapito; Alain Van Dorsselaer; Huda Mahmoud; Vartul Sangal; Wael Ismail
Journal:  Front Microbiol       Date:  2020-07-07       Impact factor: 5.640
  5 in total

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