Literature DB >> 22038971

Genome sequence of Serinicoccus profundi, a novel actinomycete isolated from deep-sea sediment.

Jing Xiao1, Yingxue Luo, Jun Xu.   

Abstract

Serinicoccus profundi MCCC 1A05965(T) was isolated from deep-sea sediment collected from the Indian Ocean. It was a Gram-positive, moderately halophilic, aerobic bacterium. Here, we describe the 3.4-Mbp draft genome sequence of S. profundi MCCC 1A05965(T).

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Year:  2011        PMID： 22038971      PMCID： PMC3209226          DOI： 10.1128/JB.06119-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Serinicoccus profundi sp. nov., an actinomycete isolated from deep-sea sediment, and emended description of the genus Serinicoccus.

Authors:  Jing Xiao; Yingxue Luo; Shujie Xie; Jun Xu
Journal:  Int J Syst Evol Microbiol       Date:  2010-01-29       Impact factor: 2.747

5.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan.

Authors:  Hana Yi; Peter Schumann; Kyounghee Sohn; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  7 in total
  1 in total

1.  Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica.

Authors:  Aqilah Yusof; Fathul Karim Sahrani; Asmat Ahmad; Gires Usup; Hamidun Bunawan
Journal:  New Microbes New Infect       Date:  2022-07-13
  1 in total

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