Literature DB >> 22038958

Complete genome sequence of the industrial strain Bacillus megaterium WSH-002.

Liming Liu1, Yang Li, Jing Zhang, Wei Zou, Zhemin Zhou, Jie Liu, Xiaomin Li, Lei Wang, Jian Chen.   

Abstract

Bacillus megaterium, an industrial strain, has been widely used in protein production and the vitamin C industry. Here we reported a finished, annotated, and compared 4.14-Mbp high-quality genome sequence of B. megaterium WSH-002, which is the companion strain for Ketogulonicigenium vulgare in the vitamin C industry and is stocked in our laboratory.

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Year:  2011        PMID： 22038958      PMCID： PMC3209192          DOI： 10.1128/JB.06066-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.

Authors:  Feng-Biao Guo; Hong-Yu Ou; Chun-Ting Zhang
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

2.  Molecular characterization of plasmid pBM300 from Bacillus megaterium QM B1551.

Authors:  Muthusamy Kunnimalaiyaan; Patricia S Vary
Journal:  Appl Environ Microbiol       Date:  2005-06       Impact factor: 4.792

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  High-yield intra- and extracellular protein production using Bacillus megaterium.

Authors:  Simon Stammen; Britta Katrin Müller; Claudia Korneli; Rebekka Biedendieck; Martin Gamer; Ezequiel Franco-Lara; Dieter Jahn
Journal:  Appl Environ Microbiol       Date:  2010-04-30       Impact factor: 4.792

7.  Role of chromosomal and plasmid-borne receptor homologues in the response of Bacillus megaterium QM B1551 spores to germinants.

Authors:  Graham Christie; Christopher R Lowe
Journal:  J Bacteriol       Date:  2007-04-13       Impact factor: 3.490

8.  Sequencing and characterization of pBM400 from Bacillus megaterium QM B1551.

Authors:  Michael D Scholle; Christen A White; Muthusamy Kunnimalaiyaan; Patricia S Vary
Journal:  Appl Environ Microbiol       Date:  2003-11       Impact factor: 4.792

9.  KEGG Atlas mapping for global analysis of metabolic pathways.

Authors:  Shujiro Okuda; Takuji Yamada; Masami Hamajima; Masumi Itoh; Toshiaki Katayama; Peer Bork; Susumu Goto; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2008-05-13       Impact factor: 16.971

10.  Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium.

Authors:  Rebekka Biedendieck; Marco Malten; Heiko Barg; Boyke Bunk; Jan-Henning Martens; Evelyne Deery; Helen Leech; Martin J Warren; Dieter Jahn
Journal:  Microb Biotechnol       Date:  2009-06-10       Impact factor: 5.813
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  12 in total

1.  Expression Analysis of Ni- and V-Associated Resistance Genes in a Bacillus megaterium Strain Isolated from a Mining Site.

Authors:  Grisel Fierros Romero; Andrea Rivas Castillo; Marlenne Gómez Ramírez; Reynaldo Pless; Norma Rojas Avelizapa
Journal:  Curr Microbiol       Date:  2016-04-23       Impact factor: 2.188

2.  Expression Changes in Metal-Resistance Genes in Microbacterium liquefaciens Under Nickel and Vanadium Exposure.

Authors:  Grisel Fierros-Romero; José A Wrosek-Cabrera; Marlenne Gómez-Ramírez; Reynaldo C Pless; A M Rivas-Castillo; Norma G Rojas-Avelizapa
Journal:  Curr Microbiol       Date:  2017-04-27       Impact factor: 2.188

3.  Draft Genome Sequence of Bacillus megaterium Type Strain ATCC 14581.

Authors:  Gitanjali Arya; Nicholas Petronella; Jennifer Crosthwait; Catherine D Carrillo; Philip S Shwed
Journal:  Genome Announc       Date:  2014-11-13

4.  Isolation, Development, and Genomic Analysis of Bacillus megaterium SR7 for Growth and Metabolite Production Under Supercritical Carbon Dioxide.

Authors:  Adam J E Freedman; Kyle C Peet; Jason T Boock; Kevin Penn; Kristala L J Prather; Janelle R Thompson
Journal:  Front Microbiol       Date:  2018-09-25       Impact factor: 5.640

5.  Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium.

Authors:  Thibault Godard; Daniela Zühlke; Georg Richter; Melanie Wall; Manfred Rohde; Katharina Riedel; Ignacio Poblete-Castro; Rainer Krull; Rebekka Biedendieck
Journal:  Front Bioeng Biotechnol       Date:  2020-02-21

6.  Functional Annotation Analytics of Bacillus Genomes Reveals Stress Responsive Acetate Utilization and Sulfate Uptake in the Biotechnologically Relevant Bacillus megaterium.

Authors:  Baraka S Williams; Raphael D Isokpehi; Andreas N Mbah; Antoinesha L Hollman; Christina O Bernard; Shaneka S Simmons; Wellington K Ayensu; Bianca L Garner
Journal:  Bioinform Biol Insights       Date:  2012-11-21

Review 7.  Comparative Genomics of Bacillus species and its Relevance in Industrial Microbiology.

Authors:  Archana Sharma; T Satyanarayana
Journal:  Genomics Insights       Date:  2013-08-18

8.  Genome Sequence of Bacillus endophyticus and Analysis of Its Companion Mechanism in the Ketogulonigenium vulgare-Bacillus Strain Consortium.

Authors:  Nan Jia; Jin Du; Ming-Zhu Ding; Feng Gao; Ying-Jin Yuan
Journal:  PLoS One       Date:  2015-08-06       Impact factor: 3.240

9.  Recognition of Protein-coding Genes Based on Z-curve Algorithms.

Authors:  Feng -Biao Guo; Yan Lin; Ling -Ling Chen
Journal:  Curr Genomics       Date:  2014-04       Impact factor: 2.236

10.  Evolution of the SpoIISABC Toxin-Antitoxin-Antitoxin System in Bacilli.

Authors:  Marek Gabriško; Imrich Barák
Journal:  Toxins (Basel)       Date:  2016-06-09       Impact factor: 4.546
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