| Literature DB >> 22037056 |
Marlies Leenaars1, Carlijn R Hooijmans, Nieky van Veggel, Gerben ter Riet, Mariska Leeflang, Lotty Hooft, Gert Jan van der Wilt, Alice Tillema, Merel Ritskes-Hoitinga.
Abstract
Before starting a new animal experiment, thorough analysis of previously performed experiments is essential from a scientific as well as from an ethical point of view. The method that is most suitable to carry out such a thorough analysis of the literature is a systematic review (SR). An essential first step in an SR is to search and find all potentially relevant studies. It is important to include all available evidence in an SR to minimize bias and reduce hampered interpretation of experimental outcomes. Despite the recent development of search filters to find animal studies in PubMed and EMBASE, searching for all available animal studies remains a challenge. Available guidelines from the clinical field cannot be copied directly to the situation within animal research, and although there are plenty of books and courses on searching the literature, there is no compact guide available to search and find relevant animal studies. Therefore, in order to facilitate a structured, thorough and transparent search for animal studies (in both preclinical and fundamental science), an easy-to-use, step-by-step guide was prepared and optimized using feedback from scientists in the field of animal experimentation. The step-by-step guide will assist scientists in performing a comprehensive literature search and, consequently, improve the scientific quality of the resulting review and prevent unnecessary animal use in the future.Entities:
Mesh:
Year: 2011 PMID: 22037056 PMCID: PMC3265183 DOI: 10.1258/la.2011.011087
Source DB: PubMed Journal: Lab Anim ISSN: 0023-6772 Impact factor: 2.471
Basic steps on how to design and carry out a comprehensive search strategy to identify potentially relevant animal studies on a specific research topic
| Step | Details | Example |
|---|---|---|
| (1) Formulate research question | Formulate a focused research question, consisting of: | What are the effects of (i) omega-3 fatty acid supplementation on (iv) A |
| (2) Identify appropriate databases and sources of studies | Identify both general biomedical and topic-specific databases Select all relevant databases Check other sources, such as reference lists | PubMed/MEDLINE and EMBASE (Ovid) |
| (3) Transform research question into search strategy | Design and run a search strategy customized for each database Start with a database that includes a thesaurus, e.g. PubMed or EMBASE Involve an information specialist Save citations (titles/abstract) in reference software Document the applied search strategies | See Table 2 for details on PubMed search strategy |
| (4) Collect search results and remove duplicates | Combine saved citations of all databases into one file in reference software and remove citations that appear more than once | PubMed, |
| (5) Identify potentially relevant papers | Screen title and abstract of the references and identify papers based on potential relevance | Screen PubMed, |
Detailed steps to transform research question into search strategy in PubMed
| Step | Details | Example |
|---|---|---|
| (A) Split research question into critical search components | Determine the critical search components (SC); usually this can be done by defining: | What are the effects of omega-3 fatty acid supplementation on A |
| (B) Identify relevant search terms for search component 1 (SC1) | Collect Medical Subject Heading terms (MeSH terms) in PubMed:
Use a word processor to document this process Do some background reading to become familiar with terms related to the topic Identify relevant synonyms and related terms Use the PubMed thesaurus (in MeSH database) to explore terminology: broader/narrower terms, related terms, entry terms Perform a PubMed search for every single MeSH term Assess the number of results found per MeSH term to evaluate usefulness Evaluate the appropriateness of MeSH terms considering definition, context or number of results | |
Collect free-text terms to search in title and abstract of references
Use a word processor to document this process Use terminology used in papers concerning this topic Use Scopus or Google for investigating variation in terminology Use the singular and plural forms Use UK and US spelling Include relevant abbreviations and trademarks Use truncation carefully Perform a PubMed search for each free-text term by adding [tiab] Assess the results found per term from the search history Evaluate the appropriateness of used terminology (consider: context or number of results) | ||
Use the Boolean operator ‘OR’ to combine both MeSH terms and free-text terms. This will result in search result: | ||
| (C) Repeat step B for SC2 | This will result in search result: | SC2: Alzheimer's disease |
| (D) Combine search results for SC1 and SC2 | Use the Boolean operator ‘AND’ to combine search results for SC1 and SC2 from the search history. This will result in search result: | SC1 AND SC2: |
| (E) Evaluate search results | Assess the number of results and the relevance of the records and, if necessary, prompt rethinking of search terms | |
| (F) Repeat step B for remaining components (i.e. SC3 and occasionally SC4*) | If SC3 or SC4 is to select all animal studies, a recently developed filter can be used (Hooijmans | SC3: Laboratory animals |
| (G) Combine search results of all the separate SCs | Use the Boolean operator ‘AND’ to combine all the separate SCs from the search history. This will result in search result: | SC1 AND SC2 AND SC3: |
| (H) Evaluate search results | Assess the number of results and the relevance of the records and, if necessary, prompt rethinking search terms and repeat steps B–G | |
| (I) Transfer search results into a reference software | Save citations (reference + abstract + source) in reference software |
*Often scientists do not include SC4 (outcome measures) in the search strategy, because many abstracts do not contain a description of these outcome measures.
By including SC4 in the search strategy, there is a potential risk of missing relevant studies
Figure 1Combining components in the search strategy (adapted from Higgins and Green[3])
Figure 2A fictive example of reporting on search results and reasons for exclusion of studies