Literature DB >> 22033837

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1.

Bin Xue1, Marcin J Mizianty, Lukasz Kurgan, Vladimir N Uversky.   

Abstract

Many proteins and protein regions are disordered in their native, biologically active states. These proteins/regions are abundant in different organisms and carry out important biological functions that complement the functional repertoire of ordered proteins. Viruses, with their highly compact genomes, small proteomes, and high adaptability for fast change in their biological and physical environment utilize many of the advantages of intrinsic disorder. In fact, viral proteins are generally rich in intrinsic disorder, and intrinsically disordered regions are commonly used by viruses to invade the host organisms, to hijack various host systems, and to help viruses in accommodation to their hostile habitats and to manage their economic usage of genetic material. In this review, we focus on the structural peculiarities of HIV-1 proteins, on the abundance of intrinsic disorder in viral proteins, and on the role of intrinsic disorder in their functions.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22033837     DOI: 10.1007/s00018-011-0859-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  483 in total

1.  Entropic switch regulates myristate exposure in the HIV-1 matrix protein.

Authors:  Chun Tang; Erin Loeliger; Paz Luncsford; Isaac Kinde; Dorothy Beckett; Michael F Summers
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-29       Impact factor: 11.205

2.  Identification of 81LGxGxxIxW89 and 171EDRW174 domains from human immunodeficiency virus type 1 Vif that regulate APOBEC3G and APOBEC3F neutralizing activity.

Authors:  Ying Dang; Roderick W Davis; Ian A York; Yong-Hui Zheng
Journal:  J Virol       Date:  2010-03-24       Impact factor: 5.103

Review 3.  Intracellular destinies: degradation, targeting, assembly, and endocytosis of HIV Gag.

Authors:  Kevin C Klein; Jonathan C Reed; Jaisri R Lingappa
Journal:  AIDS Rev       Date:  2007 Jul-Sep       Impact factor: 2.500

4.  Do viral proteins possess unique biophysical features?

Authors:  Nobuhiko Tokuriki; Christopher J Oldfield; Vladimir N Uversky; Igor N Berezovsky; Dan S Tawfik
Journal:  Trends Biochem Sci       Date:  2008-12-04       Impact factor: 13.807

5.  Structural studies of HIV-1 Tat protein.

Authors:  P Bayer; M Kraft; A Ejchart; M Westendorp; R Frank; P Rösch
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

6.  Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA.

Authors:  A Jacobo-Molina; J Ding; R G Nanni; A D Clark; X Lu; C Tantillo; R L Williams; G Kamer; A L Ferris; P Clark
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

7.  NMR solution structure of the RNA-binding peptide from human immunodeficiency virus (type 1) Rev.

Authors:  M J Scanlon; D P Fairlie; D J Craik; D R Englebretsen; M L West
Journal:  Biochemistry       Date:  1995-07-04       Impact factor: 3.162

8.  Crystal structure of HIV-1 Tat complexed with human P-TEFb.

Authors:  Tahir H Tahirov; Nigar D Babayeva; Katayoun Varzavand; Jeffrey J Cooper; Stanley C Sedore; David H Price
Journal:  Nature       Date:  2010-06-10       Impact factor: 49.962

9.  Solution structure of the mature HIV-1 protease monomer: insight into the tertiary fold and stability of a precursor.

Authors:  Rieko Ishima; Dennis A Torchia; Shannon M Lynch; Angela M Gronenborn; John M Louis
Journal:  J Biol Chem       Date:  2003-08-21       Impact factor: 5.157

10.  Structure of full-length HIV-1 CA: a model for the mature capsid lattice.

Authors:  Barbie K Ganser-Pornillos; Anchi Cheng; Mark Yeager
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

View more
  48 in total

Review 1.  The Road Less Traveled: HIV's Use of Alternative Routes through Cellular Pathways.

Authors:  Ailie Marx; Akram Alian
Journal:  J Virol       Date:  2015-03-11       Impact factor: 5.103

Review 2.  Comprehensive review of methods for prediction of intrinsic disorder and its molecular functions.

Authors:  Fanchi Meng; Vladimir N Uversky; Lukasz Kurgan
Journal:  Cell Mol Life Sci       Date:  2017-06-06       Impact factor: 9.261

3.  Characterization of RNA binding and chaperoning activities of HIV-1 Vif protein. Importance of the C-terminal unstructured tail.

Authors:  Dona Sleiman; Serena Bernacchi; Santiago Xavier Guerrero; Franck Brachet; Valéry Larue; Jean-Christophe Paillart; Carine Tisne
Journal:  RNA Biol       Date:  2014-07-22       Impact factor: 4.652

Review 4.  HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.

Authors:  Guangdi Li; Erik De Clercq
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-29       Impact factor: 11.056

5.  IDPology of the living cell: intrinsic disorder in the subcellular compartments of the human cell.

Authors:  Bi Zhao; Akila Katuwawala; Vladimir N Uversky; Lukasz Kurgan
Journal:  Cell Mol Life Sci       Date:  2020-09-30       Impact factor: 9.261

6.  DISOselect: Disorder predictor selection at the protein level.

Authors:  Akila Katuwawala; Christopher J Oldfield; Lukasz Kurgan
Journal:  Protein Sci       Date:  2019-11-07       Impact factor: 6.725

7.  Biochemical and biophysical properties of a putative hub protein expressed by vaccinia virus.

Authors:  Nicole E Kay; Travis W Bainbridge; Richard C Condit; Michael R Bubb; Reuben E Judd; Balasubramanian Venkatakrishnan; Robert McKenna; Susan M D'Costa
Journal:  J Biol Chem       Date:  2013-03-08       Impact factor: 5.157

8.  CBFβ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression.

Authors:  Dong Young Kim; Eunju Kwon; Paul D Hartley; David C Crosby; Sumanjit Mann; Nevan J Krogan; John D Gross
Journal:  Mol Cell       Date:  2013-01-17       Impact factor: 17.970

9.  Protein intrinsic disorder in the acetylome of intracellular and extracellular Toxoplasma gondii.

Authors:  Bin Xue; Victoria Jeffers; William J Sullivan; Vladimir N Uversky
Journal:  Mol Biosyst       Date:  2013-04-05

Review 10.  Oligomeric viral proteins: small in size, large in presence.

Authors:  Bhargavi Jayaraman; Amber M Smith; Jason D Fernandes; Alan D Frankel
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-08-14       Impact factor: 8.250

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.