Literature DB >> 22033538

Identification of hunchback cis-regulatory DNA conferring temporal expression in neuroblasts and neurons.

Keiko Hirono1, Jonathan S Margolis, James W Posakony, Chris Q Doe.   

Abstract

The specification of temporal identity within single progenitor lineages is essential to generate functional neuronal diversity in Drosophila and mammals. In Drosophila, four transcription factors are sequentially expressed in neural progenitors (neuroblasts) and each regulates the temporal identity of the progeny produced during its expression window. The first temporal identity is established by the Ikaros-family zinc finger transcription factor Hunchback (Hb). Hb is detected in young (newly-formed) neuroblasts for about an hour and is maintained in the early-born neurons produced during this interval. Hb is necessary and sufficient to specify early-born neuronal or glial identity in multiple neuroblast lineages. The timing of hb expression in neuroblasts is regulated at the transcriptional level. Here we identify cis-regulatory elements that confer proper hb expression in "young" neuroblasts and early-born neurons. We show that the neuroblast element contains clusters of predicted binding sites for the Seven-up transcription factor, which is known to limit hb neuroblast expression. We identify highly conserved sequences in the neuronal element that are good candidates for maintaining Hb transcription in neurons. Our results provide the necessary foundation for identifying trans-acting factors that establish the Hb early temporal expression domain.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22033538      PMCID: PMC3272097          DOI: 10.1016/j.gep.2011.10.001

Source DB:  PubMed          Journal:  Gene Expr Patterns        ISSN: 1567-133X            Impact factor:   1.224


  21 in total

1.  Regulation of neuroblast competence in Drosophila.

Authors:  Bret J Pearson; Chris Q Doe
Journal:  Nature       Date:  2003-10-09       Impact factor: 49.962

2.  A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback.

Authors:  D Tautz; C Pfeifle
Journal:  Chromosoma       Date:  1989-08       Impact factor: 4.316

3.  Regulation of POU genes by castor and hunchback establishes layered compartments in the Drosophila CNS.

Authors:  R Kambadur; K Koizumi; C Stivers; J Nagle; S J Poole; W F Odenwald
Journal:  Genes Dev       Date:  1998-01-15       Impact factor: 11.361

4.  seven-up Controls switching of transcription factors that specify temporal identities of Drosophila neuroblasts.

Authors:  Makoto I Kanai; Masataka Okabe; Yasushi Hiromi
Journal:  Dev Cell       Date:  2005-02       Impact factor: 12.270

5.  Regulation of temporal identity transitions in Drosophila neuroblasts.

Authors:  Ruth Grosskortenhaus; Bret J Pearson; Amanda Marusich; Chris Q Doe
Journal:  Dev Cell       Date:  2005-02       Impact factor: 12.270

6.  A small region surrounding the distal promoter of the hunchback gene directs maternal expression.

Authors:  J S Margolis; M Borowsky; C W Shim; J W Posakony
Journal:  Dev Biol       Date:  1994-06       Impact factor: 3.582

7.  Seven-up inhibits ultraspiracle-based signaling pathways in vitro and in vivo.

Authors:  A C Zelhof; T P Yao; J D Chen; R M Evans; M McKeown
Journal:  Mol Cell Biol       Date:  1995-12       Impact factor: 4.272

8.  Hunchback is required for the specification of the early sublineage of neuroblast 7-3 in the Drosophila central nervous system.

Authors:  Tanja Novotny; Regina Eiselt; Joachim Urban
Journal:  Development       Date:  2002-02       Impact factor: 6.868

9.  The prospero transcription factor is asymmetrically localized to the cell cortex during neuroblast mitosis in Drosophila.

Authors:  E P Spana; C Q Doe
Journal:  Development       Date:  1995-10       Impact factor: 6.868

10.  Posterior stripe expression of hunchback is driven from two promoters by a common enhancer element.

Authors:  J S Margolis; M L Borowsky; E Steingrímsson; C W Shim; J A Lengyel; J W Posakony
Journal:  Development       Date:  1995-09       Impact factor: 6.868

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  10 in total

Review 1.  Temporal fate specification and neural progenitor competence during development.

Authors:  Minoree Kohwi; Chris Q Doe
Journal:  Nat Rev Neurosci       Date:  2013-12       Impact factor: 34.870

2.  The cis-regulatory dynamics of the Drosophila CNS determinant castor are controlled by multiple sub-pattern enhancers.

Authors:  Alexander Kuzin; Mukta Kundu; Jermaine Ross; Keita Koizumi; Thomas Brody; Ward F Odenwald
Journal:  Gene Expr Patterns       Date:  2012-06-09       Impact factor: 1.224

3.  A Notch-dependent transcriptional mechanism controls expression of temporal patterning factors in Drosophila medulla.

Authors:  Alokananda Ray; Xin Li
Journal:  Elife       Date:  2022-08-30       Impact factor: 8.713

4.  Crumbs complex-directed apical membrane dynamics in epithelial cell ingression.

Authors:  Sérgio Simões; Gerald Lerchbaumer; Milena Pellikka; Paraskevi Giannatou; Thomas Lam; Dohyun Kim; Jessica Yu; David Ter Stal; Kenana Al Kakouni; Rodrigo Fernandez-Gonzalez; Ulrich Tepass
Journal:  J Cell Biol       Date:  2022-05-19       Impact factor: 8.077

5.  Developmentally regulated subnuclear genome reorganization restricts neural progenitor competence in Drosophila.

Authors:  Minoree Kohwi; Joshua R Lupton; Sen-Lin Lai; Michael R Miller; Chris Q Doe
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

6.  A common set of DNA regulatory elements shapes Drosophila appendages.

Authors:  Daniel J McKay; Jason D Lieb
Journal:  Dev Cell       Date:  2013-11-11       Impact factor: 12.270

7.  Steroid-induced microRNA let-7 acts as a spatio-temporal code for neuronal cell fate in the developing Drosophila brain.

Authors:  Mariya M Kucherenko; Jonas Barth; André Fiala; Halyna R Shcherbata
Journal:  EMBO J       Date:  2012-11-16       Impact factor: 11.598

8.  cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers.

Authors:  Jermaine Ross; Alexander Kuzin; Thomas Brody; Ward F Odenwald
Journal:  BMC Genomics       Date:  2015-09-16       Impact factor: 3.969

9.  Cis-regulatory complexity within a large non-coding region in the Drosophila genome.

Authors:  Mukta Kundu; Alexander Kuzin; Tzu-Yang Lin; Chi-Hon Lee; Thomas Brody; Ward F Odenwald
Journal:  PLoS One       Date:  2013-04-22       Impact factor: 3.240

Review 10.  Emerging Roles of Single-Cell Multi-Omics in Studying Developmental Temporal Patterning.

Authors:  Andrea Lopes; Elia Magrinelli; Ludovic Telley
Journal:  Int J Mol Sci       Date:  2020-10-11       Impact factor: 5.923

  10 in total

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