Literature DB >> 22032275

Diversity of archaeosine synthesis in crenarchaeota.

Gabriela Phillips, Manal A Swairjo, Kirk W Gaston, Marc Bailly, Patrick A Limbach, Dirk Iwata-Reuyl, Valérie de Crécy-Lagard.   

Abstract

Archaeosine (G(+)) is found at position 15 of many archaeal tRNAs. In Euryarchaeota, the G(+) precursor, 7-cyano-7-deazaguanine (preQ(0)), is inserted into tRNA by tRNA-guanine transglycosylase (arcTGT) before conversion into G(+) by ARChaeosine Synthase (ArcS). However, many Crenarchaeota known to harbor G(+) lack ArcS homologues. Using comparative genomics approaches, two families that could functionally replace ArcS in these organisms were identified: (1) GAT-QueC, a two-domain family with an N-terminal glutamine amidotransferase class-II domain fused to a domain homologous to QueC, the enzyme that produces preQ(0) and (2) QueF-like, a family homologous to the bacterial enzyme catalyzing the reduction of preQ(0) to 7-aminomethyl-7-deazaguanine. Here we show that these two protein families are able to catalyze the formation of G(+) in a heterologous system. Structure and sequence comparisons of crenarchaeal and euryarchaeal arcTGTs suggest the crenarchaeal enzymes have broader substrate specificity. These results led to a new model for the synthesis and salvage of G(+) in Crenarchaeota.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22032275      PMCID: PMC3289047          DOI: 10.1021/cb200361w

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  32 in total

1.  ESPript: analysis of multiple sequence alignments in PostScript.

Authors:  P Gouet; E Courcelle; D I Stuart; F Métoz
Journal:  Bioinformatics       Date:  1999-04       Impact factor: 6.937

2.  Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion.

Authors:  Jesse Rinehart; Bethany Krett; Mary Anne T Rubio; Juan D Alfonzo; Dieter Söll
Journal:  Genes Dev       Date:  2005-02-10       Impact factor: 11.361

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 4.  The mechanism of glutamine-dependent amidotransferases.

Authors:  F Massière; M A Badet-Denisot
Journal:  Cell Mol Life Sci       Date:  1998-03       Impact factor: 9.261

5.  A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry.

Authors:  J A Kowalak; S C Pomerantz; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1993-09-25       Impact factor: 16.971

6.  From cyclohydrolase to oxidoreductase: discovery of nitrile reductase activity in a common fold.

Authors:  Steven G Van Lanen; John S Reader; Manal A Swairjo; Valérie de Crécy-Lagard; Bobby Lee; Dirk Iwata-Reuyl
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

7.  Biosynthesis of archaeosine, a novel derivative of 7-deazaguanosine specific to archaeal tRNA, proceeds via a pathway involving base replacement on the tRNA polynucleotide chain.

Authors:  M Watanabe; M Matsuo; S Tanaka; H Akimoto; S Asahi; S Nishimura; J R Katze; T Hashizume; P F Crain; J A McCloskey; N Okada
Journal:  J Biol Chem       Date:  1997-08-08       Impact factor: 5.157

8.  Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs.

Authors:  Romina Oliva; Anna Tramontano; Luigi Cavallo
Journal:  RNA       Date:  2007-07-24       Impact factor: 4.942

9.  Transfer and isomerization of the ribose moiety of AdoMet during the biosynthesis of queuosine tRNAs, a new unique reaction catalyzed by the QueA protein from Escherichia coli.

Authors:  R K Slany; M Bösl; H Kersten
Journal:  Biochimie       Date:  1994       Impact factor: 4.079

10.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

View more
  25 in total

1.  Identification of the minimal bacterial 2'-deoxy-7-amido-7-deazaguanine synthesis machinery.

Authors:  Yifeng Yuan; Geoffrey Hutinet; Jacqueline Gamboa Valera; Jennifer Hu; Roman Hillebrand; Andrew Gustafson; Dirk Iwata-Reuyl; Peter C Dedon; Valérie de Crécy-Lagard
Journal:  Mol Microbiol       Date:  2018-10-12       Impact factor: 3.501

2.  Novel genomic island modifies DNA with 7-deazaguanine derivatives.

Authors:  Jennifer J Thiaville; Stefanie M Kellner; Yifeng Yuan; Geoffrey Hutinet; Patrick C Thiaville; Watthanachai Jumpathong; Susovan Mohapatra; Celine Brochier-Armanet; Andrey V Letarov; Roman Hillebrand; Chanchal K Malik; Carmelo J Rizzo; Peter C Dedon; Valérie de Crécy-Lagard
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

3.  Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.

Authors:  Xianghan Mei; Jonathan Alvarez; Adriana Bon Ramos; Uttamkumar Samanta; Dirk Iwata-Reuyl; Manal A Swairjo
Journal:  Proteins       Date:  2016-11-20

4.  Epoxyqueuosine Reductase QueH in the Biosynthetic Pathway to tRNA Queuosine Is a Unique Metalloenzyme.

Authors:  Qiang Li; Rémi Zallot; Brian S MacTavish; Alvaro Montoya; Daniel J Payan; You Hu; John A Gerlt; Alexander Angerhofer; Valérie de Crécy-Lagard; Steven D Bruner
Journal:  Biochemistry       Date:  2021-10-15       Impact factor: 3.162

5.  Archaeosine Modification of Archaeal tRNA: Role in Structural Stabilization.

Authors:  Ben Turner; Brett W Burkhart; Katrin Weidenbach; Robert Ross; Patrick A Limbach; Ruth A Schmitz; Valérie de Crécy-Lagard; Kenneth M Stedman; Thomas J Santangelo; Dirk Iwata-Reuyl
Journal:  J Bacteriol       Date:  2020-03-26       Impact factor: 3.490

6.  Identification of a radical SAM enzyme involved in the synthesis of archaeosine.

Authors:  Takashi Yokogawa; Yuichiro Nomura; Akihiro Yasuda; Hiromi Ogino; Keita Hiura; Saori Nakada; Natsuhisa Oka; Kaori Ando; Takuya Kawamura; Akira Hirata; Hiroyuki Hori; Satoshi Ohno
Journal:  Nat Chem Biol       Date:  2019-11-18       Impact factor: 15.040

Review 7.  Naturally occurring modified ribonucleosides.

Authors:  Phillip J McCown; Agnieszka Ruszkowska; Charlotte N Kunkler; Kurtis Breger; Jacob P Hulewicz; Matthew C Wang; Noah A Springer; Jessica A Brown
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-04-16       Impact factor: 9.349

8.  Transfer RNA methyltransferases from Thermoplasma acidophilum, a thermoacidophilic archaeon.

Authors:  Takuya Kawamura; Ryou Anraku; Takahiro Hasegawa; Chie Tomikawa; Hiroyuki Hori
Journal:  Int J Mol Sci       Date:  2014-12-23       Impact factor: 5.923

9.  RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids.

Authors:  Paul J Sample; Kirk W Gaston; Juan D Alfonzo; Patrick A Limbach
Journal:  Nucleic Acids Res       Date:  2015-03-27       Impact factor: 16.971

10.  The COMBREX project: design, methodology, and initial results.

Authors:  Brian P Anton; Yi-Chien Chang; Peter Brown; Han-Pil Choi; Lina L Faller; Jyotsna Guleria; Zhenjun Hu; Niels Klitgord; Ami Levy-Moonshine; Almaz Maksad; Varun Mazumdar; Mark McGettrick; Lais Osmani; Revonda Pokrzywa; John Rachlin; Rajeswari Swaminathan; Benjamin Allen; Genevieve Housman; Caitlin Monahan; Krista Rochussen; Kevin Tao; Ashok S Bhagwat; Steven E Brenner; Linda Columbus; Valérie de Crécy-Lagard; Donald Ferguson; Alexey Fomenkov; Giovanni Gadda; Richard D Morgan; Andrei L Osterman; Dmitry A Rodionov; Irina A Rodionova; Kenneth E Rudd; Dieter Söll; James Spain; Shuang-Yong Xu; Alex Bateman; Robert M Blumenthal; J Martin Bollinger; Woo-Suk Chang; Manuel Ferrer; Iddo Friedberg; Michael Y Galperin; Julien Gobeill; Daniel Haft; John Hunt; Peter Karp; William Klimke; Carsten Krebs; Dana Macelis; Ramana Madupu; Maria J Martin; Jeffrey H Miller; Claire O'Donovan; Bernhard Palsson; Patrick Ruch; Aaron Setterdahl; Granger Sutton; John Tate; Alexander Yakunin; Dmitri Tchigvintsev; Germán Plata; Jie Hu; Russell Greiner; David Horn; Kimmen Sjölander; Steven L Salzberg; Dennis Vitkup; Stanley Letovsky; Daniel Segrè; Charles DeLisi; Richard J Roberts; Martin Steffen; Simon Kasif
Journal:  PLoS Biol       Date:  2013-08-27       Impact factor: 8.029

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.