Literature DB >> 22030604

More to Hi-C than meets the eye.

Myong-Hee Sung, Gordon L Hager.   

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Year:  2011        PMID： 22030604     DOI： 10.1038/ng.984

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  11 in total

1.  Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

Authors:  Eitan Yaffe; Amos Tanay
Journal:  Nat Genet       Date:  2011-10-16       Impact factor: 38.330

2.  The three 'C' s of chromosome conformation capture: controls, controls, controls.

Authors:  Job Dekker
Journal:  Nat Methods       Date:  2006-01       Impact factor: 28.547

3.  Comparison of Affymetrix GeneChip expression measures.

Authors:  Rafael A Irizarry; Zhijin Wu; Harris A Jaffee
Journal:  Bioinformatics       Date:  2006-01-12       Impact factor: 6.937

Review 4.  An evaluation of 3C-based methods to capture DNA interactions.

Authors:  Marieke Simonis; Jurgen Kooren; Wouter de Laat
Journal:  Nat Methods       Date:  2007-11       Impact factor: 28.547

5.  Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.

Authors:  Simon C Biddie; Sam John; Pete J Sabo; Robert E Thurman; Thomas A Johnson; R Louis Schiltz; Tina B Miranda; Myong-Hee Sung; Saskia Trump; Stafford L Lightman; Charles Vinson; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2011-07-08       Impact factor: 17.970

Review 6.  3D shortcuts to gene regulation.

Authors:  Ofir Hakim; Myong-Hee Sung; Gordon L Hager
Journal:  Curr Opin Cell Biol       Date:  2010-05-11       Impact factor: 8.382

7.  Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements.

Authors:  Ofir Hakim; Myong-Hee Sung; Ty C Voss; Erik Splinter; Sam John; Peter J Sabo; Robert E Thurman; John A Stamatoyannopoulos; Wouter de Laat; Gordon L Hager
Journal:  Genome Res       Date:  2011-04-06       Impact factor: 9.043

8.  Activation of estrogen-responsive genes does not require their nuclear co-localization.

Authors:  Silvia Kocanova; Elizabeth A Kerr; Sehrish Rafique; Shelagh Boyle; Elad Katz; Stephanie Caze-Subra; Wendy A Bickmore; Kerstin Bystricky
Journal:  PLoS Genet       Date:  2010-04-22       Impact factor: 5.917

9.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

10.  Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

Authors:  Sam John; Peter J Sabo; Robert E Thurman; Myong-Hee Sung; Simon C Biddie; Thomas A Johnson; Gordon L Hager; John A Stamatoyannopoulos
Journal:  Nat Genet       Date:  2011-01-23       Impact factor: 38.330
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  2 in total

Review 1.  High-throughput sequencing for biology and medicine.

Authors:  Wendy Weijia Soon; Manoj Hariharan; Michael P Snyder
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

2.  Structural variation-associated expression changes are paralleled by chromatin architecture modifications.

Authors:  Nele Gheldof; Robert M Witwicki; Eugenia Migliavacca; Marion Leleu; Gérard Didelot; Louise Harewood; Jacques Rougemont; Alexandre Reymond
Journal:  PLoS One       Date:  2013-11-12       Impact factor: 3.240
  2 in total

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