Literature DB >> 22029337

Lateral dynamics of charged lipids and peripheral proteins in spatially heterogeneous membranes: comparison of continuous and Monte Carlo approaches.

Vladimir Yu Kiselev1, Marcin Leda, Alexey I Lobanov, Davide Marenduzzo, Andrew B Goryachev.   

Abstract

Biological membranes are complex environments whose physico-chemical properties are of utmost importance for the understanding of many crucial biological processes. Much attention has been given in the literature to the description of membranes along the z-axis perpendicular to the membrane. Here, we instead consider the lateral dynamics of lipids and peripheral proteins due to their electrostatic interaction. Previously, we constructed a Monte Carlo automaton capable of simulating mutual diffusive dynamics of charged lipids and associated positively charged peptides. Here, we derive and numerically analyze a system of Poisson-Boltzmann-Nernst-Planck (PBNP) equations that provide a mean-field approximation compatible with our Monte Carlo model. The thorough comparison between the mean-field PBNP equations and Monte Carlo simulations demonstrates that both the approaches are in a good qualitative agreement in all tested scenarios. We find that the two methods quantitatively deviate when the local charge density is high, presumably because the Poisson-Boltzmann formalism is applicable in the so-called weak coupling limit, whose validity is restricted to low charge densities. Nevertheless, we conclude that the mean-field PBNP approach provides a good approximation for the considerably more detailed Monte Carlo model at only a fraction of the associated computational cost and allows simulation of the membrane lateral dynamics on the space and time scales relevant for the realistic biological problems.
© 2011 American Institute of Physics

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Year:  2011        PMID: 22029337     DOI: 10.1063/1.3652958

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Multiscale Multiphysics and Multidomain Models I: Basic Theory.

Authors:  Guo-Wei Wei
Journal:  J Theor Comput Chem       Date:  2013-12       Impact factor: 0.939

2.  Multiscale multiphysics and multidomain models--flexibility and rigidity.

Authors:  Kelin Xia; Kristopher Opron; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2013-11-21       Impact factor: 3.488

3.  Signal integration by lipid-mediated spatial cross talk between Ras nanoclusters.

Authors:  Yong Zhou; Hong Liang; Travis Rodkey; Nicholas Ariotti; Robert G Parton; John F Hancock
Journal:  Mol Cell Biol       Date:  2013-12-23       Impact factor: 4.272

4.  Variational multiscale models for charge transport.

Authors:  Guo-Wei Wei; Qiong Zheng; Zhan Chen; Kelin Xia
Journal:  SIAM Rev Soc Ind Appl Math       Date:  2012-11-08       Impact factor: 10.780

  4 in total

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