Literature DB >> 220264

A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes.

P M Howley, M A Israel, M F Law, M A Martin.   

Abstract

A new approach for evaluating homologous sequences among related DNAs is presented. Conventional filter hybridization techniques are employed at 35 degrees C in a range of formamide concentrations in order to perform annealings at effective temperatures as low as Tm -50 degrees C which permits the detection of regions of homology with as much as 33% base mismatch. Under such nonstringent conditions, high levels of specific annealing can be obtained at plateau levels. In combination with the Southern "blotting" technique (1975), this approach can be used to perform biochemical heteroduplex melting experiments. The homology among the genomes of the murine polyoma virus (Py), the simian virus 40 (SV40), and the human papovavirus BK was evaluated using this new methodology.

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Year:  1979        PMID: 220264

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  120 in total

1.  Predicting crossover generation in DNA shuffling.

Authors:  G L Moore; C D Maranas; S Lutz; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

2.  Mapping Drosophila mutations with molecularly defined P element insertions.

Authors:  R Grace Zhai; P Robin Hiesinger; Tong-Wey Koh; Patrik Verstreken; Karen L Schulze; Yu Cao; Hamed Jafar-Nejad; Koenraad K Norga; Hongling Pan; Vafa Bayat; Michael P Greenbaum; Hugo J Bellen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-05       Impact factor: 11.205

3.  Heterologous gene expression on the linear DNA killer plasmid from Kluyveromyces lactis.

Authors:  J Kämper; K Esser; N Gunge; F Meinhardt
Journal:  Curr Genet       Date:  1991-02       Impact factor: 3.886

4.  Label-free detection of missense mutations and methylation differences in the p53 gene using optically diffracting hydrogels.

Authors:  Kelsey I MacConaghy; Duncan M Chadly; Mark P Stoykovich; Joel L Kaar
Journal:  Analyst       Date:  2015-09-21       Impact factor: 4.616

5.  Physical Analysis of the Campoletis sonorensis Virus Multipartite Genome and Identification of a Family of Tandemly Repeated Elements.

Authors:  D A Theilmann; M D Summers
Journal:  J Virol       Date:  1987-08       Impact factor: 5.103

6.  Structure and expression of sunflower ubiquitin genes.

Authors:  M N Binet; J H Weil; L H Tessier
Journal:  Plant Mol Biol       Date:  1991-09       Impact factor: 4.076

7.  Conservation of the gene encoding streptococcal antigen I/II in oral streptococci.

Authors:  J K Ma; C G Kelly; G Munro; R A Whiley; T Lehner
Journal:  Infect Immun       Date:  1991-08       Impact factor: 3.441

8.  Multiple actin-based motor genes in Dictyostelium.

Authors:  M A Titus; H M Warrick; J A Spudich
Journal:  Cell Regul       Date:  1989-11

9.  DNA methylation of developmental genes in pediatric medulloblastomas identified by denaturation analysis of methylation differences.

Authors:  Scott J Diede; Jamie Guenthoer; Linda N Geng; Sarah E Mahoney; Michael Marotta; James M Olson; Hisashi Tanaka; Stephen J Tapscott
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

10.  Extensive homology exists between Marek disease herpesvirus and its vaccine virus, herpesvirus of turkeys.

Authors:  C P Gibbs; K Nazerian; L F Velicer; H J Kung
Journal:  Proc Natl Acad Sci U S A       Date:  1984-06       Impact factor: 11.205

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